mRNA_L-elsbetiae_contig13107.2446.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13107.2446.1
Unique NamemRNA_L-elsbetiae_contig13107.2446.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13107.2446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13107contigL-elsbetiae_contig13107:1969..2603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size635
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13107.2446.1prot_L-elsbetiae_contig13107.2446.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13107 2010..2366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.9368896-UTR-L-elsbetiae_contig13107:1968..20091622815491.9368896-UTR-L-elsbetiae_contig13107:1968..2009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13107 1969..2009 +
1691682924.761782-UTR-L-elsbetiae_contig13107:1968..20091691682924.761782-UTR-L-elsbetiae_contig13107:1968..2009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13107 1969..2009 +
1622815491.9617367-UTR-L-elsbetiae_contig13107:2366..26031622815491.9617367-UTR-L-elsbetiae_contig13107:2366..2603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13107 2367..2603 +
1691682924.7819395-UTR-L-elsbetiae_contig13107:2366..26031691682924.7819395-UTR-L-elsbetiae_contig13107:2366..2603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13107 2367..2603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.950694-CDS-L-elsbetiae_contig13107:2009..23661622815491.950694-CDS-L-elsbetiae_contig13107:2009..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13107 2010..2366 +
1691682924.7732818-CDS-L-elsbetiae_contig13107:2009..23661691682924.7732818-CDS-L-elsbetiae_contig13107:2009..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13107 2010..2366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13107.2446.1

>prot_L-elsbetiae_contig13107.2446.1 ID=prot_L-elsbetiae_contig13107.2446.1|Name=mRNA_L-elsbetiae_contig13107.2446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MHARQQCRNRHFLTVKTLSAGVPPAGVHSPGVGYVFQKPARHEPSSDTAA
IIVLAATERQERGDGSFAFQPSLSHGVLQSTARGARQGKQRSLFRSTGPW
QIDGTPAITLSADSSKMP*
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mRNA from alignment at L-elsbetiae_contig13107:1969..2603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13107.2446.1 ID=mRNA_L-elsbetiae_contig13107.2446.1|Name=mRNA_L-elsbetiae_contig13107.2446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=635bp|location=Sequence derived from alignment at L-elsbetiae_contig13107:1969..2603+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAATACGTACAGCAAACAGACCCCGCGCCCATCTGTATCATGCACGCG
CGACAGCAGTGCCGAAATCGTCACTTTCTGACAGTGAAAACATTGTCTGC
CGGCGTGCCGCCCGCAGGGGTGCATTCGCCAGGGGTGGGTTATGTGTTTC
AAAAACCAGCGCGACACGAACCAAGCTCTGACACAGCAGCAATAATAGTG
CTGGCTGCAACAGAGAGACAAGAACGCGGAGATGGCTCGTTCGCCTTCCA
GCCTTCGCTCTCCCATGGTGTGCTCCAATCCACCGCCCGGGGTGCGCGCC
AAGGGAAGCAACGATCGCTCTTTCGATCCACGGGCCCTTGGCAAATCGAC
GGCACGCCCGCTATCACGCTGTCAGCTGATTCGTCAAAAATGCCTTAGCT
GAGCGCGTTTCATCCAACTCGGCAGGTTGCCAGTTTTCTGTTCGGGGATA
GATAAATGAGACAACGACAAAGAGGCACGGGGGGCGTTGGTGAAGTGCTA
CATGCGCCCGGCGCATGTAGAATGGGAGAGGAAGCGCCAAAGAGCCGCCC
GGACACTTTTCTAAGGACACCGCGAGTAGTGCCCCTACATATACACCAAT
GGGGTAGGCTACACTTGCACAACCCACACTCAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13107:1969..2603+

>mRNA_L-elsbetiae_contig13107.2446.1 ID=mRNA_L-elsbetiae_contig13107.2446.1|Name=mRNA_L-elsbetiae_contig13107.2446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig13107:1969..2603+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGCGCGACAGCAGTGCCGAAATCGTCACTTTCTGACAGTGAAAAC
ATTGTCTGCCGGCGTGCCGCCCGCAGGGGTGCATTCGCCAGGGGTGGGTT
ATGTGTTTCAAAAACCAGCGCGACACGAACCAAGCTCTGACACAGCAGCA
ATAATAGTGCTGGCTGCAACAGAGAGACAAGAACGCGGAGATGGCTCGTT
CGCCTTCCAGCCTTCGCTCTCCCATGGTGTGCTCCAATCCACCGCCCGGG
GTGCGCGCCAAGGGAAGCAACGATCGCTCTTTCGATCCACGGGCCCTTGG
CAAATCGACGGCACGCCCGCTATCACGCTGTCAGCTGATTCGTCAAAAAT
GCCTTAGATGCACGCGCGACAGCAGTGCCGAAATCGTCACTTTCTGACAG
TGAAAACATTGTCTGCCGGCGTGCCGCCCGCAGGGGTGCATTCGCCAGGG
GTGGGTTATGTGTTTCAAAAACCAGCGCGACACGAACCAAGCTCTGACAC
AGCAGCAATAATAGTGCTGGCTGCAACAGAGAGACAAGAACGCGGAGATG
GCTCGTTCGCCTTCCAGCCTTCGCTCTCCCATGGTGTGCTCCAATCCACC
GCCCGGGGTGCGCGCCAAGGGAAGCAACGATCGCTCTTTCGATCCACGGG
CCCTTGGCAAATCGACGGCACGCCCGCTATCACGCTGTCAGCTGATTCGT
CAAAAATGCCTTAG
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