mRNA_L-elsbetiae_contig13090.2440.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13090.2440.1
Unique NamemRNA_L-elsbetiae_contig13090.2440.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: M4ZFA2_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 TaxID=1245469 RepID=M4ZFA2_9BRAD)

HSP 1 Score: 61.6 bits (148), Expect = 5.750e-11
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   43 HTCYNGKDS-ELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQDVAVN 192
            HTCYNG DS +LRG+ S+ I K  LSSDW LQL PMKLESLVI +Q   VN
Sbjct:   22 HTCYNGGDSGKLRGNPSQ-ISKSRLSSDWALQLEPMKLESLVIVDQHATVN 71          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A1B2YPT1_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YPT1_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 9.270e-11
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   43 HTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQ 177
            HTCYNG+D E   S+ + I KP+LSSDW LQL  MKLESLVI  Q
Sbjct:   35 HTCYNGRDREQPLSDKERIYKPYLSSDWSLQLDSMKLESLVIGYQ 79          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A0J8BFL5_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BFL5_BETVV)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-9
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 MRSSLHGPYGLGYTHTCYNGKD--SELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQ 177
            M SS H PY  G+TH    G D    +RGS S+   K  LSSDWGLQL PMK ESLVIA+Q
Sbjct:    1 MTSSHHAPYVQGFTHATMAGTDRCDPVRGSESE---KAGLSSDWGLQLDPMKSESLVIADQ 58          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A7B8Q3_9ACTO (Uncharacterized protein n=1 Tax=Schaalia odontolytica ATCC 17982 TaxID=411466 RepID=A7B8Q3_9ACTO)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-9
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 MRSSLHGPYGLGYTHTCYNGKDS--ELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQ 177
            M S+ H PY LG+TH    G +    +R S S   LK  LSSDWGLQL PMK+ESLVIA+Q
Sbjct:   11 MTSNHHAPYVLGFTHATMAGTEGCDTVRWSES---LKASLSSDWGLQLDPMKVESLVIADQ 68          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A143Z1R9_9LACT (Uncharacterized protein n=9 Tax=Bacilli TaxID=91061 RepID=A0A143Z1R9_9LACT)

HSP 1 Score: 55.8 bits (133), Expect = 9.630e-9
Identity = 34/64 (53.12%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 MRSSLHGPYGLGYTHTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQDVAVN 192
            M S+ H PY LGYT    +G  S  + + S   LK  LSSD  LQLA MK ESLVIA+Q  AVN
Sbjct:    1 MTSNHHAPYDLGYTRATMDGTTSS-KTARSSESLKAILSSDCRLQLAYMKPESLVIADQHAAVN 63          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A6A5L047_LUPAL (Uncharacterized protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L047_LUPAL)

HSP 1 Score: 57.0 bits (136), Expect = 1.550e-8
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   43 HTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQDVAVN 192
            HTCYNG DS  R  + + I K  LSSD  LQL  MKLESLVIA+Q+ AVN
Sbjct:   68 HTCYNGGDSGQRRGDPELISKSHLSSDCTLQLECMKLESLVIADQNAAVN 117          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A062X488_9LACO (Uncharacterized protein n=1 Tax=Ligilactobacillus animalis TaxID=1605 RepID=A0A062X488_9LACO)

HSP 1 Score: 55.5 bits (132), Expect = 1.690e-8
Identity = 35/64 (54.69%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 MRSSLHGPYGLGYTHTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQDVAVN 192
            M S+ H PY LGYT    +G  S      SK  LK  LSSD  LQLA MK ESLVIA+Q  AVN
Sbjct:    1 MTSNHHAPYDLGYTRATMDGTTSRKTARFSKS-LKAVLSSDCRLQLAYMKSESLVIADQHAAVN 63          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A6A5L2S0_LUPAL (Uncharacterized protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L2S0_LUPAL)

HSP 1 Score: 57.0 bits (136), Expect = 1.980e-8
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   43 HTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQDVAVN 192
            HTCYNG DS  R  + + I K  LSSD  LQL  MKLESLVIA+Q+ AVN
Sbjct:   83 HTCYNGGDSGQRRGDPELISKSHLSSDCTLQLECMKLESLVIADQNAAVN 132          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A8J2ZPJ5_9RHOB (Uncharacterized protein n=1 Tax=Salipiger pallidus TaxID=1775170 RepID=A0A8J2ZPJ5_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 3.210e-8
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   43 HTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIA 171
            HTCYNG D+ L       I K +LSSDWGLQL PMK ESLVIA
Sbjct:   26 HTCYNGSDNGL-------IPKNYLSSDWGLQLDPMKSESLVIA 61          
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Match: A0A183U2L9_TOXCA (Uncharacterized protein ycf68 n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183U2L9_TOXCA)

HSP 1 Score: 57.0 bits (136), Expect = 5.350e-8
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   43 HTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMKLESLVIANQDVAVN 192
            HTCYNG   E++    +P LK  LSSD  L+LA MKLE LVIANQ+VAVN
Sbjct:   54 HTCYNGWYREMQYREVEPNLKTSLSSDCRLKLAYMKLELLVIANQNVAVN 103          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13090.2440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M4ZFA2_9BRAD5.750e-1166.67Uncharacterized protein n=1 Tax=Bradyrhizobium oli... [more]
A0A1B2YPT1_9BACT9.270e-1164.44Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A0J8BFL5_BETVV1.040e-957.38Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A7B8Q3_9ACTO1.330e-955.74Uncharacterized protein n=1 Tax=Schaalia odontolyt... [more]
A0A143Z1R9_9LACT9.630e-953.13Uncharacterized protein n=9 Tax=Bacilli TaxID=9106... [more]
A0A6A5L047_LUPAL1.550e-862.00Uncharacterized protein ycf68 n=1 Tax=Lupinus albu... [more]
A0A062X488_9LACO1.690e-854.69Uncharacterized protein n=1 Tax=Ligilactobacillus ... [more]
A0A6A5L2S0_LUPAL1.980e-862.00Uncharacterized protein ycf68 n=1 Tax=Lupinus albu... [more]
A0A8J2ZPJ5_9RHOB3.210e-865.12Uncharacterized protein n=1 Tax=Salipiger pallidus... [more]
A0A183U2L9_TOXCA5.350e-862.00Uncharacterized protein ycf68 n=1 Tax=Toxocara can... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13090contigL-elsbetiae_contig13090:5058..5249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog1245469.S58_28350
Hectar predicted targeting categoryother localisation
EggNOG OGs1NAN7@1224,2DMNG@1,2UD5X@28211,32SP1@2,3K45J@41294
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.63781-CDS-L-elsbetiae_contig13090:5057..52491622815490.63781-CDS-L-elsbetiae_contig13090:5057..5249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13090 5058..5249 +
1691682923.8925738-CDS-L-elsbetiae_contig13090:5057..52491691682923.8925738-CDS-L-elsbetiae_contig13090:5057..5249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13090 5058..5249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13090.2440.1prot_L-elsbetiae_contig13090.2440.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13090 5058..5249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13090.2440.1

>prot_L-elsbetiae_contig13090.2440.1 ID=prot_L-elsbetiae_contig13090.2440.1|Name=mRNA_L-elsbetiae_contig13090.2440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
MRSSLHGPYGLGYTHTCYNGKDSELRGSNSKPILKPFLSSDWGLQLAPMK
LESLVIANQDVAVN
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mRNA from alignment at L-elsbetiae_contig13090:5058..5249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13090.2440.1 ID=mRNA_L-elsbetiae_contig13090.2440.1|Name=mRNA_L-elsbetiae_contig13090.2440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=192bp|location=Sequence derived from alignment at L-elsbetiae_contig13090:5058..5249+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTCAAGTCTTCATGGCCCTTATGGACTGGGCTACACACACACGTG CTACAATGGGAAGGACAGCGAGTTGCGAGGAAGTAATTCAAAGCCAATCT TAAAACCTTTTCTTAGTTCGGATTGGGGGCTGCAACTCGCCCCCATGAAG CTGGAATCACTAGTAATCGCGAATCAGGATGTCGCGGTGAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13090:5058..5249+

>mRNA_L-elsbetiae_contig13090.2440.1 ID=mRNA_L-elsbetiae_contig13090.2440.1|Name=mRNA_L-elsbetiae_contig13090.2440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig13090:5058..5249+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTCAAGTCTTCATGGCCCTTATGGACTGGGCTACACACACACGTG
CTACAATGGGAAGGACAGCGAGTTGCGAGGAAGTAATTCAAAGCCAATCT
TAAAACCTTTTCTTAGTTCGGATTGGGGGCTGCAACTCGCCCCCATGAAG
CTGGAATCACTAGTAATCGCGAATCAGGATGTCGCGGTGAATATGAGGTC
AAGTCTTCATGGCCCTTATGGACTGGGCTACACACACACGTGCTACAATG
GGAAGGACAGCGAGTTGCGAGGAAGTAATTCAAAGCCAATCTTAAAACCT
TTTCTTAGTTCGGATTGGGGGCTGCAACTCGCCCCCATGAAGCTGGAATC
ACTAGTAATCGCGAATCAGGATGTCGCGGTGAAT
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