mRNA_L-elsbetiae_contig1307.2426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1307.2426.1
Unique NamemRNA_L-elsbetiae_contig1307.2426.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A023B8U4_GRENI (Centrin, caltractin n=2 Tax=Gregarina niphandrodes TaxID=110365 RepID=A0A023B8U4_GRENI)

HSP 1 Score: 115 bits (288), Expect = 9.850e-29
Identity = 63/158 (39.87%), Postives = 95/158 (60.13%), Query Frame = 2 
Query:   38 PDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            P + A+ V+E+REAF+LFDT G+G +   EL  +MQ+LGF+ KNP +F ++  +  KR  G+  F +F +     +     ++ +R +F + D + TG IS +NLK+VA E GE  +D EL EM++ A   D+ G G        E+SF DFY +MTK
Sbjct:   11 PGLTADEVEEIREAFNLFDTNGSGTVDPRELKAAMQSLGFESKNPTIFNVIADLE-KRSSGAIDFEEFLDGITSKLGDRESKEGIRKIFMLFDDDRTGSISFKNLKRVAQELGETMTDEELKEMIERA---DSNGDG--------EISFEDFYAIMTK 156
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A1D3D7M0_9EIME (Centrin 2 n=3 Tax=Eimeriidae TaxID=5799 RepID=A0A1D3D7M0_9EIME)

HSP 1 Score: 112 bits (281), Expect = 1.440e-27
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 2 
Query:   38 PDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            P + AE V+E+REAF LFDT G+G +   EL  +MQ+LGF+ KNP +++++ ++  +  GG   F +F +     +      + ++ +FN+ D + TG I+L+NLK+VA E GE+ S+ EL EM++ A   D+ G G        E+SF DFY +MTK
Sbjct:   21 PGLTAEEVEEVREAFSLFDTDGSGTVDPKELKAAMQSLGFEAKNPTVYQMIAELD-RDGGGPVDFEEFLDAITAKLGDKESREGIQKIFNLFDDDKTGSITLKNLKRVARELGESLSEEELREMVERA---DSNGDG--------EISFEDFYAIMTK 166
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A836CPT7_9STRA (Calcium-dependent protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.520e-27
Identity = 64/167 (38.32%), Postives = 104/167 (62.28%), Query Frame = 2 
Query:   11 RKAAAKADIPDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            ++AA   + P +  E ++E+REAF+LFDT G+G I   EL  +MQ+LGF+ KN  +++++  I  K   G+  F +F +     +      +D++ VFN+ D ++TG+ISL+NLK+VA E GEN +DAEL+EM++ A     +  GD+      E++  +FY +MTK
Sbjct:   14 KRAAKTYERPGLSEEEIEEIREAFNLFDTDGSGSIDPKELKAAMQSLGFEAKNQTIYQMIADID-KDSSGAIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDHTGKISLKNLKRVAKELGENMTDAELLEMIERA-----DADGDS------EINPDEFYAIMTK 168
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A078B9B5_STYLE (Calciumdependent protein 4 n=7 Tax=Spirotrichea TaxID=33829 RepID=A0A078B9B5_STYLE)

HSP 1 Score: 110 bits (274), Expect = 1.420e-26
Identity = 63/164 (38.41%), Postives = 96/164 (58.54%), Query Frame = 2 
Query:   20 AAKADIPDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            A K + P +  + ++E++EAFDLFDT G+G I   EL  +MQ+LGF+ KN  +F+++  +  K K G+  F +F +     +      +D+  VF + D +NTG I+L NL++VA E GE  +D EL EM+D A   D+ G G         V+  DF+N+MTK
Sbjct:   11 AKKYERPGLTEDEIEEIKEAFDLFDTDGSGSIDPKELKAAMQSLGFEAKNQTIFQMISDLD-KNKSGTIDFEEFLDMMTARMSDKDTREDISKVFRLFDDDNTGTITLRNLRRVARELGETMTDEELQEMIDRA---DSNGDG--------AVTLDDFFNIMTK 162
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A7J6LU09_PEROL (Caltractin ICL1e n=7 Tax=Perkinsus TaxID=28000 RepID=A0A7J6LU09_PEROL)

HSP 1 Score: 110 bits (274), Expect = 1.580e-26
Identity = 58/158 (36.71%), Postives = 94/158 (59.49%), Query Frame = 2 
Query:   38 PDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            P +  + + E+REAF+LFDT G+G I   EL  +MQ+LGF+ KNP +++++  +  K   G+  F +F +   + +      + +  +FN+ D + TG I+++NL++VA E GE  +D EL EM++ A   D+ G G        E+S  DFYN+MTK
Sbjct:   21 PGMTEDEIDEIREAFNLFDTDGSGTIDPKELKAAMQSLGFESKNPTIYQMIADLE-KESNGAVDFEEFLDSITNKLGDKESREGIMRIFNLFDDDKTGTITIKNLRRVAKELGETMTDEELREMIERA---DSNGDG--------EISAEDFYNIMTK 166
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A125YZN4_TOXGV (Caltractin, putative n=18 Tax=Eukaryota TaxID=2759 RepID=A0A125YZN4_TOXGV)

HSP 1 Score: 109 bits (273), Expect = 2.220e-26
Identity = 61/160 (38.12%), Postives = 96/160 (60.00%), Query Frame = 2 
Query:   32 DIPDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            D P +  + ++E+REAF+LFDT G+G I   EL  +MQ+LGF+ KNP +++++  +  +  GG   F +F +     +      + ++ +F++ D + TG I+L+NLK+VA E GE  S+ EL EML+ A   D+ G G        E+SF DFY +MTK
Sbjct:   19 DRPGLTEDEIEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLD-RDSGGPIDFEEFLDAITAKLGDKESREGIQKIFSLFDDDRTGTITLKNLKRVAKELGETMSEDELREMLERA---DSNGDG--------EISFEDFYAIMTK 166
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: I7IH68_BABMR (Caltractin ICL1c n=1 Tax=Babesia microti (strain RI) TaxID=1133968 RepID=I7IH68_BABMR)

HSP 1 Score: 109 bits (272), Expect = 2.660e-26
Identity = 64/162 (39.51%), Postives = 99/162 (61.11%), Query Frame = 2 
Query:   32 DIPDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTS--FTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            DI  +  E ++E+ EAF+LFDT+ +G +   E+  +MQ+LG   KNPL+F+I   IS   K GS+S  F  F +     + + + ++ ++ +FN+ D + TG IS +N+K+VA E GEN SD EL +M++ A   D+ G G        E+SF DFYN+MT+
Sbjct:   13 DISSLTEEEIEEIHEAFNLFDTENSGTVDPKEIKCAMQSLGLDTKNPLVFQI---ISDIEKSGSSSINFNDFLQFITSRLGNRNSKEGIQKIFNLFDDDKTGSISFKNIKRVAKELGENISDQELRDMINKA---DSNGDG--------ELSFDDFYNIMTR 160
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A5A8CTE5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CTE5_CAFRO)

HSP 1 Score: 108 bits (271), Expect = 3.950e-26
Identity = 65/160 (40.62%), Postives = 95/160 (59.38%), Query Frame = 2 
Query:   32 DIPDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            D P +  E ++E+REAF+LFDT G+G I   EL  +MQ+LGF+ KN  +++++  I  K   G+  F +F +     +      +D+  VFN+ D + +GRISL NLK+VA E GE  +DAELMEM++ A   D +G  DA+E          FY +MTK
Sbjct:   15 DRPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKSAMQSLGFEAKNATIYQMIGDID-KDGSGAIDFDEFLDMMTAKMSDKDTREDIVKVFNLFDDDGSGRISLRNLKRVAKELGETMTDAELMEMIERAD-TDQDGEIDAEE----------FYAIMTK 162
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: F0WRL3_9STRA (Calciumdependent protein 4 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WRL3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.490e-26
Identity = 63/158 (39.87%), Postives = 96/158 (60.76%), Query Frame = 2 
Query:   38 PDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            P I  + V+E+REAF+LFDT G+G I   EL  +MQ+LGF+ KN ++++++  I  K   GS  F +F +     +   +  +D++ VF + D + TG+ISL NLK+VA E GE  SDAEL+EM++ A   DT+  G        E+   +FY +MT+
Sbjct:   20 PGITQDEVEEIREAFNLFDTDGSGTIDPKELKTAMQSLGFEAKNQIIYQMIADID-KDGSGSIDFDEFLDMMTAKMSDKNTREDIQKVFALFDDDQTGKISLRNLKRVARELGETMSDAELLEMIERA---DTDQDG--------EIKPDEFYAIMTR 165
[Close]
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Match: A0A812RM93_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RM93_9DINO)

HSP 1 Score: 108 bits (270), Expect = 1.780e-25
Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 2 
Query:   32 DIPDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTLGFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMVFNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGDADEQLSNEVSFPDFYNLMTK 511
            D P +  E ++E+REAF+LFDT G+G I   EL  +M++LGF  KN  +++++L I  K   GS  F +F +     +     ++D+  VFN+ D + TG+ISL NLK+VA E GE  ++AEL+EM++ A        GD D ++S +    +F ++MTK
Sbjct:   60 DRPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKQAMKSLGFDAKNATIYQMILDID-KDGSGSIEFDEFLDMMTHKMSDKDTDEDIMKVFNLFDDDGTGKISLRNLKRVAKELGETMTEAELLEMIERA-------DGDQDGEISPQ----EFRDIMTK 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1307.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A023B8U4_GRENI9.850e-2939.87Centrin, caltractin n=2 Tax=Gregarina niphandrodes... [more]
A0A1D3D7M0_9EIME1.440e-2739.24Centrin 2 n=3 Tax=Eimeriidae TaxID=5799 RepID=A0A1... [more]
A0A836CPT7_9STRA1.520e-2738.32Calcium-dependent protein 4 n=1 Tax=Tribonema minu... [more]
A0A078B9B5_STYLE1.420e-2638.41Calciumdependent protein 4 n=7 Tax=Spirotrichea Ta... [more]
A0A7J6LU09_PEROL1.580e-2636.71Caltractin ICL1e n=7 Tax=Perkinsus TaxID=28000 Rep... [more]
A0A125YZN4_TOXGV2.220e-2638.13Caltractin, putative n=18 Tax=Eukaryota TaxID=2759... [more]
I7IH68_BABMR2.660e-2639.51Caltractin ICL1c n=1 Tax=Babesia microti (strain R... [more]
A0A5A8CTE5_CAFRO3.950e-2640.63Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
F0WRL3_9STRA8.490e-2639.87Calciumdependent protein 4 putative n=2 Tax=Albugo... [more]
A0A812RM93_9DINO1.780e-2538.75Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1307contigL-elsbetiae_contig1307:13385..15841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score117.1
Seed ortholog evalue9.7e-24
Seed eggNOG ortholog110365.A0A023B8U4
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007346,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031974,GO:0031981,GO:0032465,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0046483,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097711,GO:0098534,GO:0120031,GO:0120036,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
EggNOG free text desc.EF-hand domain
EggNOG OGs3YA1Q@5794,COG5126@1,KOG0028@2759
COG Functional cat.DZ
Best tax levelApicomplexa
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-27_004890.1
Exons6
Model size718
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1307.2426.1prot_L-elsbetiae_contig1307.2426.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1307 13386..15733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.043708-UTR-L-elsbetiae_contig1307:13384..133851622815489.043708-UTR-L-elsbetiae_contig1307:13384..13385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1307 13385..13385 +
1691682922.968469-UTR-L-elsbetiae_contig1307:13384..133851691682922.968469-UTR-L-elsbetiae_contig1307:13384..13385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1307 13385..13385 +
1622815489.1249352-UTR-L-elsbetiae_contig1307:15733..158411622815489.1249352-UTR-L-elsbetiae_contig1307:15733..15841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1307 15734..15841 +
1691682923.0437965-UTR-L-elsbetiae_contig1307:15733..158411691682923.0437965-UTR-L-elsbetiae_contig1307:15733..15841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1307 15734..15841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.0571077-CDS-L-elsbetiae_contig1307:13385..134911622815489.0571077-CDS-L-elsbetiae_contig1307:13385..13491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 13386..13491 +
1691682922.9866662-CDS-L-elsbetiae_contig1307:13385..134911691682922.9866662-CDS-L-elsbetiae_contig1307:13385..13491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 13386..13491 +
1622815489.0707319-CDS-L-elsbetiae_contig1307:13771..139291622815489.0707319-CDS-L-elsbetiae_contig1307:13771..13929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 13772..13929 +
1691682922.995365-CDS-L-elsbetiae_contig1307:13771..139291691682922.995365-CDS-L-elsbetiae_contig1307:13771..13929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 13772..13929 +
1622815489.0813882-CDS-L-elsbetiae_contig1307:14202..142661622815489.0813882-CDS-L-elsbetiae_contig1307:14202..14266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 14203..14266 +
1691682923.004655-CDS-L-elsbetiae_contig1307:14202..142661691682923.004655-CDS-L-elsbetiae_contig1307:14202..14266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 14203..14266 +
1622815489.0910108-CDS-L-elsbetiae_contig1307:14641..147011622815489.0910108-CDS-L-elsbetiae_contig1307:14641..14701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 14642..14701 +
1691682923.01504-CDS-L-elsbetiae_contig1307:14641..147011691682923.01504-CDS-L-elsbetiae_contig1307:14641..14701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 14642..14701 +
1622815489.1036568-CDS-L-elsbetiae_contig1307:15177..152631622815489.1036568-CDS-L-elsbetiae_contig1307:15177..15263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 15178..15263 +
1691682923.0247197-CDS-L-elsbetiae_contig1307:15177..152631691682923.0247197-CDS-L-elsbetiae_contig1307:15177..15263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 15178..15263 +
1622815489.1146905-CDS-L-elsbetiae_contig1307:15598..157331622815489.1146905-CDS-L-elsbetiae_contig1307:15598..15733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 15599..15733 +
1691682923.034135-CDS-L-elsbetiae_contig1307:15598..157331691682923.034135-CDS-L-elsbetiae_contig1307:15598..15733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1307 15599..15733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1307.2426.1

>prot_L-elsbetiae_contig1307.2426.1 ID=prot_L-elsbetiae_contig1307.2426.1|Name=mRNA_L-elsbetiae_contig1307.2426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
MSSRKAAAKADIPDIHAESVQELREAFDLFDTKGAGEIPMSELVDSMQTL
GFQDKNPLMFEIMLKISAKRKGGSTSFTQFAEETADVIRSVHQEKDLRMV
FNMLDTENTGRISLENLKKVANEFGENRSDAELMEMLDTAKLVDTEGSGD
ADEQLSNEVSFPDFYNLMTKGKSAATTTAGTSPGTPGRRRSSTTNSQDKA
MM*
back to top

mRNA from alignment at L-elsbetiae_contig1307:13385..15841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1307.2426.1 ID=mRNA_L-elsbetiae_contig1307.2426.1|Name=mRNA_L-elsbetiae_contig1307.2426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2457bp|location=Sequence derived from alignment at L-elsbetiae_contig1307:13385..15841+ (Laminarionema elsbetiae ELsaHSoW15)
TATGTCGTCTCGGAAGGCCGCGGCGAAGGCCGACATCCCAGACATACATG
CGGAGAGCGTACAGGAGCTACGAGAAGCGTTCGATCTGTTTGATACCAAG
GGAGCTGGTGCGTGGGAAACCAAGTCTCTCGACCATCATCTGTTGACGGG
TGGATACCAACATGACCGAGTCTCCGATGCGCTGTGCGATTATCAGGATA
TATCACCCGCCGTATGCACACTGGTTTACTGCTCTGCCGTAAGTAATTTC
AAGCGACGCTTGCGCTCATAATAATTCGCGCCCCCTCATACAACAATTGA
GAAGTGAAATCAGGGCGGAAGATTTGTGATGGGAGTCGGATGCATCATCT
AGTCTATATGTATGCCTCTCTCTGTTGATCTCTGCAGGCGAAATTCCAAT
GTCGGAGCTCGTTGATTCTATGCAGACCCTCGGATTCCAAGACAAGAACC
CGTTGATGTTCGAGATCATGCTCAAGATTAGTGCCAAGCGGAAGGGGGGC
AGCACAAGCTTTACTCAATTTGCGGAAGAGACGGCAGATGTCATCGTGAG
CGAAGCTAACATAGAGATAATACATGCGGTAGTCTACCTAGGTAATAGAT
TCCGTATAGTATATATCTATATCTATGTAGTCTAGACGTATAATAGATGA
TCTAAGACAGCTGTACTGTGCCTTTCGTACTTACGTAAACTGTAAATCGG
CTGATGCCCTCAAAAATGAGACATCGTCCGTATACTCATCGTCGAGACCC
TTCATTTACTACGTAGTATGTTGTTGCCTACCTTTAACTTCTGCTCGTTG
GCGCATCGAGTATTTCAGAGAAGCGTGCACCAAGAAAAAGATCTGAGAAT
GGTCTTCAATATGCTGGACACAGAAAACACAGGTAAGATGCTGGCGATCT
GGCGCAAGGCGCGAGCAGAGGGGAGATCAAAGGAATTAGGGAAGGGGTAC
CGAATTATCGAACGCCCTCGCTTGCCCCCGCGGAAAAACTCGTGAAAAAT
TCTACTCTATGTAGTGTGCGTACCACGTTGTTCTTTCGAGTGATGCAACT
CTTGACGACGGGGCACGCCTGCCTCCAGGTGGCGAGAATCGACTATCATC
CAGTACGAATCCATATATAGTTAGTTGTAGCTGGATTGCTGTTTTTATTT
ACTCACACGTGCCGGCAGTGTCATAATTATGTGCTGTGTTCATCCCCCCC
CCCCCCCCTCGAAATTAACCGTGCTGCGCGATGCTTGCTGCTTGCCCTGG
GAGACAGGCAGGATAAGCTTGGAAAACCTCAAGAAGGTCGCAAACGAGTT
CGGAGAAAATCGATCAGGTGATGAGAGGCAACAGGACCCCAGACAAAAGA
CCGGTCTTTCCCTTTGCCAGTCAGAAGTAGATATAACGAGCAAGTTCTCG
AAACATGTGCACACCATTCAAAGTGGCAACTCTTGGGAAGAAATCATGTT
TCGGGTGTGTGTGTAGGATATGAGGCACAACACGAATCCGAAAAAAGGAT
AATAACGCTCGGGGGAAGATGCAAATTAATGATCATATAACACAATAAAT
ATTATCAGCCGGGAAGCATCCCCGAACACAGTAGTAGTAGTGGGTGAACG
AAAGTAGTTGGGAGCTGTCCGTTCCTCGGCTTTTGGGCTCCTTCCAAATT
GTCCTCCAACAAACACACGATCAATATTGTCTGGGTCTACGCCTACATAC
GTACAAACCGACACGAATTTTGCTGCGCGTGGTTAGATGTGTGACTCTGT
TGCCTTGTTTCCATCCTCTCTTGGTCGGTCATTCTTGGTCAAGACGCTGA
GCTCATGGAGATGTTGGACACCGCAAAGCTTGTTGATACCGAAGGCTCAG
GAGATGCAGACGAGCAGCTCTCCAACGAGGTACACAGAAGAAGCAGCACT
GCATAATAGCATATTATCTAAAGGTAGGTACGTAGGTGCTCGGGTATTCA
ATTAGCGGAGATCCACCGTGAACGATGTTTCGCCTTCCGACAAGGGAGGA
AACCGTAACAGCAGCCAGCGGGGTGAGGACAATGTTCAGATAAAACGCAT
GAAACTCCAGCACACGAAAAGAAAGGAGCGACATTCGTGAGGTCGGCTGC
GAAAGAGGAGTGGATGGCTGTCAAGTTGGAACACCCCGCACGAAGTCATA
TTGTCGACACATTTCCATGCCCCACTCACTCTCTGCTCTCCTCCGCGGGT
GATCGGATCATCAGGTTTCCTTTCCTGACTTCTACAACCTCATGACGAAG
GGAAAGTCAGCAGCAACAACAACTGCCGGGACATCGCCCGGTACCCCTGG
GAGGCGTCGGAGTAGCACCACGAATAGCCAAGACAAGGCCATGATGTAAC
ACATTTGTGTTGAGTACGGTTTGAAGGATGACCCGCCGTCAAGTTTGCAT
GATTCTTCGTTCTTCGCATACATATGTATGTAGTCTACATGGCCAATGAG
GATCGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1307:13385..15841+

>mRNA_L-elsbetiae_contig1307.2426.1 ID=mRNA_L-elsbetiae_contig1307.2426.1|Name=mRNA_L-elsbetiae_contig1307.2426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig1307:13385..15841+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCTCGGAAGGCCGCGGCGAAGGCCGACATCCCAGACATACATGC
GGAGAGCGTACAGGAGCTACGAGAAGCGTTCGATCTGTTTGATACCAAGG
GAGCTGATGTCGTCTCGGAAGGCCGCGGCGAAGGCCGACATCCCAGACAT
ACATGCGGAGAGCGTACAGGAGCTACGAGAAGCGTTCGATCTGTTTGATA
CCAAGGGAGCTGGCGAAATTCCAATGTCGGAGCTCGTTGATTCTATGCAG
ACCCTCGGATTCCAAGACAAGAACCCGTTGATGTTCGAGATCATGCTCAA
GATTAGTGCCAAGCGGAAGGGGGGCAGCACAAGCTTTACTCAATTTGCGG
AAGAGACGGCAGATGTCATCGCGAAATTCCAATGTCGGAGCTCGTTGATT
CTATGCAGACCCTCGGATTCCAAGACAAGAACCCGTTGATGTTCGAGATC
ATGCTCAAGATTAGTGCCAAGCGGAAGGGGGGCAGCACAAGCTTTACTCA
ATTTGCGGAAGAGACGGCAGATGTCATCAGAAGCGTGCACCAAGAAAAAG
ATCTGAGAATGGTCTTCAATATGCTGGACACAGAAAACACAGAGAAGCGT
GCACCAAGAAAAAGATCTGAGAATGGTCTTCAATATGCTGGACACAGAAA
ACACAGGCAGGATAAGCTTGGAAAACCTCAAGAAGGTCGCAAACGAGTTC
GGAGAAAATCGATCAGGCAGGATAAGCTTGGAAAACCTCAAGAAGGTCGC
AAACGAGTTCGGAGAAAATCGATCAGACGCTGAGCTCATGGAGATGTTGG
ACACCGCAAAGCTTGTTGATACCGAAGGCTCAGGAGATGCAGACGAGCAG
CTCTCCAACGAGACGCTGAGCTCATGGAGATGTTGGACACCGCAAAGCTT
GTTGATACCGAAGGCTCAGGAGATGCAGACGAGCAGCTCTCCAACGAGGT
TTCCTTTCCTGACTTCTACAACCTCATGACGAAGGGAAAGTCAGCAGCAA
CAACAACTGCCGGGACATCGCCCGGTACCCCTGGGAGGCGTCGGAGTAGC
ACCACGAATAGCCAAGACAAGGCCATGATGTAAGTTTCCTTTCCTGACTT
CTACAACCTCATGACGAAGGGAAAGTCAGCAGCAACAACAACTGCCGGGA
CATCGCCCGGTACCCCTGGGAGGCGTCGGAGTAGCACCACGAATAGCCAA
GACAAGGCCATGATGTAA
back to top