mRNA_L-elsbetiae_contig13056.2418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13056.2418.1
Unique NamemRNA_L-elsbetiae_contig13056.2418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13056.2418.1 vs. uniprot
Match: A0A6H5KMV8_9PHAE (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMV8_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 7.260e-100
Identity = 186/372 (50.00%), Postives = 214/372 (57.53%), Query Frame = 1 
Query:   67 RACMAMVILAGFSDRTSAFLVHPPPSTSKSSTYCCSTLIDNRVRGVKQQHHQKQRQVVRQLDWRDRTERNLRHVLFLQTEDRDRAFELLEDYIERESGSGEEREDFDRIRGLVPHMRKRLWKAPSKEQEDATEELGMDDFQFATKEYIPNLTSQPWCVLLQPTDFDFDFKPRPNSPRVSTPMVEMLQFLCGVRPP*RTHFASCCHLVRSRQQL*MQTSMLSPGRVWLLHMYINIASLCWCCWFSLLLSRRMKPYTSWFWLCLGL*LGRWEPEAFPWAQQLEEASPTIQEEYRALRAREESDSQFKNSKEGGYTSQGWTHIPLVNAREPAELYESQRTHFPKTLKILKDLGILQNARAVLIGRQQPMSGIKMH 1182
            +A + + +L   SD +SAF+   P + + SS  C ST   +    ++Q    +Q  V+  LDWR R  R+ +HV+FL+  DRD+AFELLE YIERES +GE RED+DRIRGLVPHMRKRLWKA S+EQEDATE+LGMDDFQFATKEYIPNLTS+PW                                                                                                                WEPE FPWAQQLEEASP IQEEYRALRA+E SDSQFKNSKEGGYTSQGWTHIPLVNAREPAE+YE+QR HFPKTLKIL+DLGIL+NARAVLIGRQQPMSGIK H
Sbjct:    7 QAAVPVAVLLCSSDWSSAFIAQAPAAAASSSG-CSSTSTCSGA--IRQPQQGRQATVLHHLDWRHRPGRSAQHVVFLERADRDKAFELLETYIERESDAGE-REDYDRIRGLVPHMRKRLWKASSREQEDATEQLGMDDFQFATKEYIPNLTSRPW----------------------------------------------------------------------------------------------------------------WEPEVFPWAQQLEEASPIIQEEYRALRAQEASDSQFKNSKEGGYTSQGWTHIPLVNAREPAEMYEAQRAHFPKTLKILEDLGILRNARAVLIGRQQPMSGIKTH 262
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13056.2418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMV8_9PHAE7.260e-10050.00Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13056contigL-elsbetiae_contig13056:1602..5089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue1.3e-39
Seed eggNOG ortholog2880.D8LH92
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Aspartyl/Asparaginyl beta-hydroxylase
EggNOG OGs2E6F7@1,2SD50@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionbeta-hydroxylase, aspartyl/asparaginyl family
Ec32 orthologEc-24_001040.1
Exons5
Model size1182
Cds size606
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.2364523-UTR-L-elsbetiae_contig13056:1601..16491622815488.2364523-UTR-L-elsbetiae_contig13056:1601..1649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 1602..1649 +
1691682922.378397-UTR-L-elsbetiae_contig13056:1601..16491691682922.378397-UTR-L-elsbetiae_contig13056:1601..1649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 1602..1649 +
1622815488.3092644-UTR-L-elsbetiae_contig13056:3801..40771622815488.3092644-UTR-L-elsbetiae_contig13056:3801..4077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 3802..4077 +
1691682922.4210918-UTR-L-elsbetiae_contig13056:3801..40771691682922.4210918-UTR-L-elsbetiae_contig13056:3801..4077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 3802..4077 +
1622815488.3216436-UTR-L-elsbetiae_contig13056:4349..45171622815488.3216436-UTR-L-elsbetiae_contig13056:4349..4517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 4350..4517 +
1691682922.4310105-UTR-L-elsbetiae_contig13056:4349..45171691682922.4310105-UTR-L-elsbetiae_contig13056:4349..4517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 4350..4517 +
1622815488.3436096-UTR-L-elsbetiae_contig13056:5005..50891622815488.3436096-UTR-L-elsbetiae_contig13056:5005..5089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 5006..5089 +
1691682922.4432793-UTR-L-elsbetiae_contig13056:5005..50891691682922.4432793-UTR-L-elsbetiae_contig13056:5005..5089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13056 5006..5089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.250534-CDS-L-elsbetiae_contig13056:1649..19031622815488.250534-CDS-L-elsbetiae_contig13056:1649..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13056 1650..1903 +
1691682922.3885286-CDS-L-elsbetiae_contig13056:1649..19031691682922.3885286-CDS-L-elsbetiae_contig13056:1649..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13056 1650..1903 +
1622815488.261964-CDS-L-elsbetiae_contig13056:3248..33961622815488.261964-CDS-L-elsbetiae_contig13056:3248..3396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13056 3249..3396 +
1691682922.4044564-CDS-L-elsbetiae_contig13056:3248..33961691682922.4044564-CDS-L-elsbetiae_contig13056:3248..3396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13056 3249..3396 +
1622815488.2931638-CDS-L-elsbetiae_contig13056:3597..38011622815488.2931638-CDS-L-elsbetiae_contig13056:3597..3801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13056 3598..3801 +
1691682922.4130266-CDS-L-elsbetiae_contig13056:3597..38011691682922.4130266-CDS-L-elsbetiae_contig13056:3597..3801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13056 3598..3801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13056.2418.1prot_L-elsbetiae_contig13056.2418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13056 1650..3801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13056.2418.1

>prot_L-elsbetiae_contig13056.2418.1 ID=prot_L-elsbetiae_contig13056.2418.1|Name=mRNA_L-elsbetiae_contig13056.2418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
MVIDIGRACMAMVILAGFSDRTSAFLVHPPPSTSKSSTYCCSTLIDNRVR
GVKQQHHQKQRQVVRQLDWRDRTERNLRHVLFLQTEDRDRAFELLEDYIE
RESGSGEEREDFDRIRGLVPHMRKRLWKAPSKEQEDATEELGMDDFQFAT
KEYIPNLTSQPWCVLLQPTDFDFDFKPRPNSPRVSTPMVEMLQFLCGVRP
P*
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mRNA from alignment at L-elsbetiae_contig13056:1602..5089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13056.2418.1 ID=mRNA_L-elsbetiae_contig13056.2418.1|Name=mRNA_L-elsbetiae_contig13056.2418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3488bp|location=Sequence derived from alignment at L-elsbetiae_contig13056:1602..5089+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCAAAGTGCAAAGGACGGGAGAGAGAGAGAGAGAGAGAGCAGCGCGAT
GGTGATCGATATTGGGCGAGCTTGCATGGCGATGGTGATACTGGCAGGCT
TTTCCGATCGAACGAGCGCCTTCTTGGTACATCCCCCTCCCAGTACATCG
AAAAGTTCAACCTACTGCTGCTCTACGCTTATCGACAACAGAGTAAGAGG
GGTGAAACAGCAGCACCACCAGAAGCAGCGGCAGGTAGTTCGCCAGCTTG
ACTGGCGAGATCGCACCGAGCGCAACCTTCGACACGTGCTGTTTTTGCAA
ACGTGAGTCATGCCGCTTCGTATATACCATCCGCAAAACAGCACGTGACG
TCAGCTCTGCAAGAACACAACCCCTCCGTGAGACACCGGGTTGCTGGTAG
ATGTCGCCCCTCTGTGGACATGGGTGACCACCATGCATGCGGCCTGTTTG
AGCCCTACTTATAGTCTCGCCTCTATCTAACGCAGCGCTTGGATGTGCTG
AGCTATTCAACAAACAATTCCATTTCACGTCCCAGCCGACCTCCGAGGCA
GTTGGTCGCACTTGGCTCCAACGTCTCCCAATAACAGAGTGTAGCAGTCG
CATTCGGGCAGAACCCCAACCGCTTAACTCTTTTAGTCCTAGAAGCTCGT
TTGGAGAAAAAATTGTGACACCTTAATTTGCCCACTGTTCTCGACCTATG
TATGTACATACATAGACTTGCAATGGCAGTCTTTGGAACCCGTAAAATGG
GCTGGGGGCACCCCGCCGAGGGGTAGGACACTTGCCCGCACACAGCTCCA
CAGCAGTGCTGGAGACACAACTGAGTTGTTGCGGATATCTCGAAAATCTC
GGGAACAAAATCGCCACGATTCGTACCTTCGGCGGCGCCCCCGGCGGTTC
AGCCGTTTGAGCCGCACAGCACACACACCGCTTTGCTCTCACTCTTGAGA
ATCGCTGTCTGCTGAGCTTAGAGCGGGTTGCGTCGCCCGCCACGCTCTAT
TGTGTGTTGTGAGGGCTGCTTCGTGTGTTAACACACGCACAGCTCAGGGT
TCACGTCATGTCTCTTCAGCATAGAACTTTTGTGTTGTCTAGTCCGCTAA
AACAGTTTGTACTGCGTTTCAGTATACTTTTTTTCTCCAAACATGACTTG
CATTTTGAATACATTTTTTCTCCAAATGATGTCGGGGCTCCGCAGCTGCA
AAATGGAGAGACTGTTGTTTCTCGGCCAATCAGTGGGCACCCAGAAGGCG
CGATAACGTTTCGGTGATCACTTTTTTTTTGAGAGGGCTGGCGTATTGTA
CTAAAAGGGTGAAAAGGCAGTAAACACAATTGTAGACACCCCTACTCGTG
CGAGCGGGAGGTCCCAAGAGTAGGGGTGAACCTACAACTCGGGCAGTGGC
TTATTTCCTTTCTTGGTATGTGGCGAGGTTAGCCAAGCTCAACCGAGTCG
TCTCGGCGGATTCGTGAGTGAGCCTCTTCCGTTGACATGCCATCTTGGAC
ATATGAAACCGAGACTCTTTAGGTCTGTATGTGCGTACGTACTTTGCCAG
GAAAGATCCATATCTAGGTATCCACACAATCGCTCAGTCTGCTGCGAAAC
CAATATCTGCCCCCCGCTTCTGGGCATGATTTGCGATTGTTGAAAAGCGA
GGACCGTGACAGGGCGTTCGAACTGCTTGAGGACTACATCGAGCGGGAAA
GCGGGTCCGGCGAGGAGCGGGAGGATTTCGACCGCATTCGAGGGCTCGTG
CCGCACATGCGCAAGCGCTTGTGGAAGGCACCCTCCAAAGAGCAGGTGCA
GGAACCCTCTGCCCTTGGGTTATTGCGCTATGGAGTGCGCCATTGGTTTC
TGAAGAGTTATGTGTCCATGGCAGATTGACCGCTTAAATTCCGAAGCGGA
GGCGTGTTTCTTCTGACGTGCTCTGTATCCTCCCGGAGATACGTGGGGCT
AAAATACACCGGTATACTGTCCATGCTGCCGCCATCGCTGCTGCAGGAAG
ATGCGACGGAAGAGTTAGGCATGGACGACTTCCAGTTCGCGACGAAGGAG
TATATTCCCAACCTGACGTCACAGCCATGGTGTGTTCTACTCCAACCTAC
AGATTTCGATTTCGATTTCAAGCCGCGTCCCAACTCTCCAAGGGTTTCGA
CACCAATGGTGGAAATGCTGCAATTCTTGTGCGGAGTTCGACCACCGTAG
AGGACCCACTTCGCTTCCTGTTGTCATCTCGTTCGCTCGCGACAACAGCT
GTGAATGCAAACTTCAATGCTCTCTCCGGGTCGGGTTTGGCTGTTACATA
TGTATATCAATATCGCCTCTCTCTGCTGGTGTTGCTGGTTTTCATTGTTG
CTATCGCGACGCATGAAGCCCTACACTTCATGGTTCTGGCTCTGCTTGGG
TCTCTAACTTGGCAGGTGGGAGCCGGAAGCATTCCCATGGGCGCAGCAGC
TGGAGGAAGCGAGCCCGACCATACAGGTGTGTACATCCGCATTCACGTTT
TACCAGTGCTTGCTAAAATACTTGGTATGTGGCACATATTTCATAGTGTC
AATTCTCAACAAGTCTTTCCGCCTGTGACTTTGAAACCTCCCCAACCCTG
CAGGACGAGCACACCGATGACACGATCTTGGGGTTCAGTAGCGGGTGGAA
GGAACAGACAGCTGAGCAGCGACCCACCCACAGCTTACTCCTCGCTCTGT
CTTGTTGTTTGCATCGTCGCTACTCATCCTTTTGGCGCACGCCATCAGGA
GGAGTACCGGGCGCTGCGTGCTCGGGAAGAGTCCGATTCTCAGTTCAAGA
ATAGCAAGGAGGGGGGCTACACGAGCCAGGGGTGGACGCACATCCCTCTC
GTCAACGCCAGGGAGCCGGCGGAGCTGTACGAGTCGCAGCGAACTCACTT
TCCCAAGACGCTCAAGGTGCCCTCCCCGGACGTGCATAAACCCCGAATCA
CCCCCCCGGAAGTTTTCCCACCAAGTCTTCTGTACCATGTAGACGAAACG
TCGGATATCGTGCCACACAGCGAGAAGGAGGATCTTTCGTGAAAGCTGAG
CTGTGAAGCGTGCTGGGACCGAGACAGTTGGGTGGCCGCAATTATTCTAC
ATTTTGCAAAGCGAACGGGACCCAAATAAATGGCTCGTATATCTGCTGCT
TTTGGCATTAGGGTGCATGCAGACCACGTGTTGTTCTGGTTTCGTTGTGT
TTTTTTGCCGGCGTTGGCGCATCACAGCAGTATGCATGTAGGTGCGGAAC
GGGAATTTCAACGACACTTTTCGAGCCTATCCTCCCTCTCCGGGCAGCAG
GATATCCTAAATACCACAAACGCTTCATTATTTCATTATTTCTGACCACC
ACCCTCCTCGACATCAACACGCCTCTCTCGTCGTCTGCCTGCCCCCGCCT
GTAGATCTTGAAAGACCTTGGCATCCTCCAAAACGCGCGGGCGGTGCTGA
TCGGGCGTCAGCAACCGATGTCAGGAATCAAGATGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13056:1602..5089+

>mRNA_L-elsbetiae_contig13056.2418.1 ID=mRNA_L-elsbetiae_contig13056.2418.1|Name=mRNA_L-elsbetiae_contig13056.2418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig13056:1602..5089+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGATCGATATTGGGCGAGCTTGCATGGCGATGGTGATACTGGCAGG
CTTTTCCGATCGAACGAGCGCCTTCTTGGTACATCCCCCTCCCAGTACAT
CGAAAAGTTCAACCTACTGCTGCTCTACGCTTATCGACAACAGAGTAAGA
GGGGTGAAACAGCAGCACCACCAGAAGCAGCGGCAGGTAGTTCGCCAGCT
TGACTGGCGAGATCGCACCGAGCGCAACCTTCGACACGTGCTGTTTTTGC
AAACATGGTGATCGATATTGGGCGAGCTTGCATGGCGATGGTGATACTGG
CAGGCTTTTCCGATCGAACGAGCGCCTTCTTGGTACATCCCCCTCCCAGT
ACATCGAAAAGTTCAACCTACTGCTGCTCTACGCTTATCGACAACAGAGT
AAGAGGGGTGAAACAGCAGCACCACCAGAAGCAGCGGCAGGTAGTTCGCC
AGCTTGACTGGCGAGATCGCACCGAGCGCAACCTTCGACACGTGCTGTTT
TTGCAAACCGAGGACCGTGACAGGGCGTTCGAACTGCTTGAGGACTACAT
CGAGCGGGAAAGCGGGTCCGGCGAGGAGCGGGAGGATTTCGACCGCATTC
GAGGGCTCGTGCCGCACATGCGCAAGCGCTTGTGGAAGGCACCCTCCAAA
GAGCAGCGAGGACCGTGACAGGGCGTTCGAACTGCTTGAGGACTACATCG
AGCGGGAAAGCGGGTCCGGCGAGGAGCGGGAGGATTTCGACCGCATTCGA
GGGCTCGTGCCGCACATGCGCAAGCGCTTGTGGAAGGCACCCTCCAAAGA
GCAGGAAGATGCGACGGAAGAGTTAGGCATGGACGACTTCCAGTTCGCGA
CGAAGGAGTATATTCCCAACCTGACGTCACAGCCATGGTGTGTTCTACTC
CAACCTACAGATTTCGATTTCGATTTCAAGCCGCGTCCCAACTCTCCAAG
GGTTTCGACACCAATGGTGGAAATGCTGCAATTCTTGTGCGGAGTTCGAC
CACCGTAGGAAGATGCGACGGAAGAGTTAGGCATGGACGACTTCCAGTTC
GCGACGAAGGAGTATATTCCCAACCTGACGTCACAGCCATGGTGTGTTCT
ACTCCAACCTACAGATTTCGATTTCGATTTCAAGCCGCGTCCCAACTCTC
CAAGGGTTTCGACACCAATGGTGGAAATGCTGCAATTCTTGTGCGGAGTT
CGACCACCGTAG
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