mRNA_L-elsbetiae_contig13054.2417.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13054.2417.1
Unique NamemRNA_L-elsbetiae_contig13054.2417.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: D7G9D2_ECTSI (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D2_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 8.460e-61
Identity = 214/359 (59.61%), Postives = 234/359 (65.18%), Query Frame = 1 
Query:   37 ASCVGLGVGALLTAGGLLLAIQGLPASGNPAAMEAEGGRG-----DARCSSAGPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWEGGFPPEGRYRYYILSHEXXXXXXXXXXXXXXXXXXXXXXXXXLKERYHFVIIGEG-----------TAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYESDFRLLKSDLAASFNQWRRHLTFRMEDFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGEWERRSVYGLSRGKEIRYHTYQPHDLVIEPERRCVRLLLDGTEVYFDRCLIANSGE 1065
            +S +GLGVGA+L  GGLLLA QGLP  GNPAAMEAEGGRG     D   +S     A              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E E  FP EG YR+YIL+ E                      XXX                        T ADAAMESILR++PEAEILCLSDETP PADDS +THTG+YE+DFRLLK+DL ASFNQWRRHL FR E F  G               TGD+ RG  GG         E R  YGLS+GKEIRYHTY+PHDL+IEPERRCVRLLLDGTEVY+D+CLIAN+G+
Sbjct:   17 SSTLGLGVGAILAMGGLLLATQGLPDDGNPAAMEAEGGRGGRHGGDDYHTSLASRTARRATTSTEPNATGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEE-FPAEGSYRFYILTPEEAAAEGTSALDGFAGGWDGYEDXXXXXXXXXXXXXXXXXXXXXXXXXXXTTADAAMESILRMRPEAEILCLSDETPCPADDS-DTHTGSYEADFRLLKTDLVASFNQWRRHLAFRKEGFANGXXXXXXXX-----XXTGDS-RGADGG---------EGRWAYGLSKGKEIRYHTYEPHDLIIEPERRCVRLLLDGTEVYYDKCLIANAGK 358
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: A0A6H5L4I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I6_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.230e-58
Identity = 216/346 (62.43%), Postives = 238/346 (68.79%), Query Frame = 1 
Query:   37 ASCVGLGVGALLTAGGLLLAIQGLPASGNPAAMEAEGGRGDARCSSAGPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWEGGFPPEGRYRYYILSHEXXXXXXXXXXXXXXXXXXXXXXXXXLKERYHFVIIGEG----TAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYESDFRLLKSDLAASFNQWRRHLTFRMEDFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGEWERRSVYGLSRGKEIRYHTYQPHDLVIEPERRCVRLLLDGTEVYFDRCLIANSG 1062
            +S +GLGVGA+L  GGLL+A QGLP +GNP AMEAEGGRG+        S A        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              FP EGRYR YIL+ E              XXXXXXXXXXX                 T ADAAMESILR++PEAEILCLSD+TP PADDS +T+TG+YE+DFRLLK+DLAASFNQWRR L FR E F  G S             TGD+ RG  GG         E RS YGLS+GKEIRYHTY+PHDL+IEPERRCVRLLLDGTEVY+D+CLIAN+G
Sbjct:   86 SSTLGLGVGAILAMGGLLVATQGLPDNGNPPAMEAEGGRGELHGDDYHTSFASRTGSASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------FPAEGRYRVYILTPEEEAAEETSALDGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTADAAMESILRMRPEAEILCLSDKTPCPADDS-DTYTGSYEADFRLLKTDLAASFNQWRRLLAFREEGFANGGSXXXXXXXXXX-TTTGDS-RGAEGG---------EGRSAYGLSKGKEIRYHTYEPHDLIIEPERRCVRLLLDGTEVYYDKCLIANAG 405
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: K3WXL9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXL9_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 3.670e-10
Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 1 
Query:  544 KERYHFVIIGEGTAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYESDFRLLKSDLAASFNQWRRHLTFRME------DFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGEWERRSVYGLSRGKEIRYHTYQPHDLVIEPERRCVRLLLDGTEVYFDRCLIANS 1059
            K+ + FVI+G GTAA AA+E+I +  PEA+IL LSDE   P  D+ + +T A + D+++ +  L  ++N+WRRHLT ++E      +   G +S S+SS+                              +  L   KE+R+          E  R C   L DGTE+ +++CLIA+S
Sbjct:   13 KKTHKFVIVGSGTAAHAAIEAIRQEDPEADILVLSDENALPRLDT-DPYTSALDDDYQIAEP-LMQTYNEWRRHLTAKLETEPSDNNIANGNNSNSNSST--------------------------FLPPLTLLLGNKEMRFDA--------EKNRIC---LGDGTEIRYEKCLIASS 151
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: A0A2D4CJY6_PYTIN (Apoptosis-inducing factor 1, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJY6_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 5.320e-8
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 1 
Query:  544 KERYH-FVIIGEGTAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYE--SDFRLLKSDLAASFNQWRRHLTFRMEDFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGEWERRSVYGLSRGKEIRYHTYQPHDLVIEPERRCVRLLLDGTEVYFDRCLIANSGE 1065
            +++YH +VIIG GTAA AA+E+I + + +A+IL +SDE   P  +S++   GA +  S+   L   L   +N+WRRH+  R+E+   G                                   +  +   L   K  + H         + E++ + +L DGTE+ +++CLIA SG+
Sbjct:   52 QQKYHKYVIIGSGTAAHAAIEAIRQAESDADILIVSDERALPRLESNSPTAGAADRTSEHEPLSDALLEIYNEWRRHIAQRIEEEDPGD----------------------------------DNNNPVTLLMNKHTKMH--------FDVEKKRI-VLSDGTEIRYEKCLIACSGK 185
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: A0A836C7T6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7T6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.180e-7
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  544 KERYHFVIIGEGTAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYESDF-RLLKSDLAASFNQWRRHLT 771
            K +Y +VIIG GT A AA+ESIL +QP+A+IL L+DET SPA  +        E +    +  DL  S+N+WRR  T
Sbjct:  257 KRKYTYVIIGSGTTASAAIESILNLQPDADILLLTDETASPAFHNQQDVADPQEPEGPSQMGPDLLHSYNEWRRQST 333
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: A0A2D4BL96_PYTIN (Apoptosis-inducing factor 1, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BL96_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 2.100e-7
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 1 
Query:  544 KERYH-FVIIGEGTAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYE--SDFRLLKSDLAASFNQWRRHLTFRMEDFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGEWERRSVYGLSRGKEIRYHTYQPHDLVIEPERRCVRLLLDGTEVYFDRCLIANSGE 1065
            +++YH +VIIG GTAA AA+E+I + + +A+IL +SDE   P  +S++   GA +  S+   L   L   +N+WRRH+  R+E+   G                                   +  +   L   K  + H         + E++ + +L DGTE+ +++CLIA SG+
Sbjct:   22 QQKYHKYVIIGSGTAAHAAIEAIRQAESDADILIVSDERALPRLESNSPTAGAADRTSEHEPLSDALLEIYNEWRRHIAQRIEEEDPGD----------------------------------DNNNPVTLLMNKHTKMH--------FDVEKKRI-VLSDGTEIRYEKCLIACSGK 155
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: A0A484E599_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E599_BRELC)

HSP 1 Score: 62.4 bits (150), Expect = 5.360e-7
Identity = 53/176 (30.11%), Postives = 73/176 (41.48%), Query Frame = 1 
Query:  547 ERYHFVIIGEGTAADAAMESILRVQPEAEILCLSDETPSPADD----SSNTHTGAYESDFRLLKSDLAASFNQWRRHLTFRMEDFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGEWERRSVYGLSRGKEIRYHTYQPHDLVIEPERRCVRLLLDGTEVYFDRCLIANSG 1062
            + + +VI+G GTAA+AA+E+I +    A+IL LSDE   P  D    + N   G  E   R L   L  S+N+WRRHL+ R E+                                               S G            L  + E+ CV  L DGTEV +DRCL+A++G
Sbjct:   71 KHHSYVIVGSGTAANAAIEAIRQEDASADILVLSDENALPRLDFGVGNDNGDEGGNE---RPLAPALLESYNEWRRHLSARFEE-------------------------------------------EVASSAGPPPLTLLLDKRPLEFDVEKNCV-FLGDGTEVRYDRCLVASAG 199
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: A0A7S2V1H0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1H0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.670e-7
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  553 YHFVIIGEGTAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYESDFRLLKSDLAASFNQWRRHLTFRMED 786
            Y +VI+GEG+ A AA+E IL V P A+IL LS E   P  D               L SDL +S+N+WRRH+  R+E+
Sbjct:  122 YTYVILGEGSTAQAAVEGILSVDPSADILLLSSEAQMPRIDMRFRRA--------TLGSDLRSSYNEWRRHIAPRLEE 191
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: W7U6U0_9STRA (Apoptosis inducing factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6U0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.130e-6
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:  541 LKERYHFVIIGEGTAADAAMESILRVQPEAEILCLSDETPSPADDSSNTHTGAYESDFRLLKSDLAASFNQWRRHLTFRME 783
            +K  Y +VI+G GT A AA+E+I   QP+A+IL +S+E   P  D    H          L + L  S+N+WRRH T ++E
Sbjct:  157 VKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISNEAALPQPDVFRHHA---------LSAPLLHSYNEWRRHTTSKLE 228
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BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Match: A0A5D6XFC0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFC0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.190e-6
Identity = 58/214 (27.10%), Postives = 91/214 (42.52%), Query Frame = 1 
Query:  544 KERYH-FVIIGEGTAADAAMESILRVQPEAEILCLSDETPSP-----------------ADDSSNTHTGAYESDFRL-------LKSDLAASFNQWRRHLTFRMEDFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGEWERRSVYGLSRGKEIRYHTYQ--------PHDLVIEP-------ERRCVRLLLDGTEVYFDRCLIANSGE 1065
            ++R H FVI+G GTAA AA+E+I +  P A+IL LSDE+  P                  DDS    TG +E            +   L  ++N+WRRHLT  +ED                 + +GD    RV        G+ ++   + + +                  P  L+++        E+ C+ L  DGTE+ +++CLIA+ G+
Sbjct:   12 QQRAHTFVIVGSGTAAHAAIEAIRQDAPSADILVLSDESARPRVDTGGXXXXXXXXXXRVDDSELGATGTHEPRXXXXXXXXXQIAEPLLETYNEWRRHLTATLEDEP---------------SESGDRRNARV-------WGDGQQTQTHQVHQXXXXXXXXXXXXXXXXXXPLTLLLDKKEMRFDVEKNCIHLA-DGTEIRYEKCLIASPGK 202
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13054.2417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G9D2_ECTSI8.460e-6159.61Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L4I6_9PHAE1.230e-5862.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WXL9_GLOUD3.670e-1032.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4CJY6_PYTIN5.320e-828.25Apoptosis-inducing factor 1, putative (Fragment) n... [more]
A0A836C7T6_9STRA1.180e-746.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4BL96_PYTIN2.100e-728.25Apoptosis-inducing factor 1, putative n=1 Tax=Pyth... [more]
A0A484E599_BRELC5.360e-730.11Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S2V1H0_9STRA7.670e-743.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U6U0_9STRA3.130e-639.51Apoptosis inducing factor n=1 Tax=Nannochloropsis ... [more]
A0A5D6XFC0_9STRA3.190e-627.10Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13054contigL-elsbetiae_contig13054:239..4663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue1.4e-54
Seed eggNOG ortholog2880.D7G9D2
Preferred nameAIFM1
KEGG rclassRC00176
KEGG koko:K04727,ko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,ko04210,ko04214,ko04217,map00910,map01120,map04210,map04214,map04217
KEGG ModuleM00531
Hectar predicted targeting categorysignal anchor
GOsGO:0000166,GO:0000302,GO:0000737,GO:0001101,GO:0002931,GO:0003254,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004174,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006308,GO:0006309,GO:0006323,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006921,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007584,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009056,GO:0009057,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010257,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0015980,GO:0016020,GO:0016043,GO:0016174,GO:0016310,GO:0016491,GO:0016645,GO:0016649,GO:0016651,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0019899,GO:0022008,GO:0022411,GO:0022607,GO:0022900,GO:0022904,GO:0023052,GO:0030154,GO:0030162,GO:0030182,GO:0030261,GO:0030262,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032355,GO:0032368,GO:0032370,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032981,GO:0033108,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0034622,GO:0034641,GO:0034655,GO:0034976,GO:0035556,GO:0035690,GO:0036094,GO:0036293,GO:0036294,GO:0042221,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043270,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043933,GO:0044070,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046034,GO:0046483,GO:0046677,GO:0046700,GO:0048037,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050660,GO:0050662,GO:0050664,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0051385,GO:0051402,GO:0051704,GO:0051707,GO:0051716,GO:0051881,GO:0051900,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070059,GO:0070301,GO:0070482,GO:0070887,GO:0070997,GO:0071103,GO:0071236,GO:0071241,GO:0071310,GO:0071383,GO:0071384,GO:0071389,GO:0071392,GO:0071396,GO:0071407,GO:0071453,GO:0071495,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0071949,GO:0072521,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090649,GO:0090650,GO:0097035,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097305,GO:0097306,GO:0097366,GO:0098542,GO:0098588,GO:0098805,GO:0110096,GO:1900117,GO:1900119,GO:1900161,GO:1900163,GO:1901135,GO:1901214,GO:1901216,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902065,GO:1902170,GO:1902510,GO:1902882,GO:1903624,GO:1903729,GO:1903793,GO:1904044,GO:1904045,GO:1905780,GO:1905782,GO:1905952,GO:1905954,GO:2000116,GO:2001056,GO:2001138,GO:2001140
EggNOG free text desc.apoptosis-inducing factor
EggNOG OGsCOG0446@1,KOG1346@2759
EC1.7.1.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1065
Cds size1065
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13054.2417.1prot_L-elsbetiae_contig13054.2417.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13054 239..4663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.1426225-CDS-L-elsbetiae_contig13054:238..3401622815488.1426225-CDS-L-elsbetiae_contig13054:238..340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 239..340 -
1691682922.335835-CDS-L-elsbetiae_contig13054:238..3401691682922.335835-CDS-L-elsbetiae_contig13054:238..340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 239..340 -
1622815488.1554053-CDS-L-elsbetiae_contig13054:2020..23261622815488.1554053-CDS-L-elsbetiae_contig13054:2020..2326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 2021..2326 -
1691682922.3496945-CDS-L-elsbetiae_contig13054:2020..23261691682922.3496945-CDS-L-elsbetiae_contig13054:2020..2326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 2021..2326 -
1622815488.1721323-CDS-L-elsbetiae_contig13054:3186..36651622815488.1721323-CDS-L-elsbetiae_contig13054:3186..3665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 3187..3665 -
1691682922.3579922-CDS-L-elsbetiae_contig13054:3186..36651691682922.3579922-CDS-L-elsbetiae_contig13054:3186..3665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 3187..3665 -
1622815488.189335-CDS-L-elsbetiae_contig13054:4485..46631622815488.189335-CDS-L-elsbetiae_contig13054:4485..4663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 4486..4663 -
1691682922.3675168-CDS-L-elsbetiae_contig13054:4485..46631691682922.3675168-CDS-L-elsbetiae_contig13054:4485..4663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13054 4486..4663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13054.2417.1

>prot_L-elsbetiae_contig13054.2417.1 ID=prot_L-elsbetiae_contig13054.2417.1|Name=mRNA_L-elsbetiae_contig13054.2417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=355bp
SEQQQQQQSSRSASCVGLGVGALLTAGGLLLAIQGLPASGNPAAMEAEGG
RGDARCSSAGPSAAAAAAADADDSDQLQQSDGTGGDTKDNETSPPPPPWD
SGDGPPPPHGGGGGGGGGGGGGGGSGGGDGDGDGGEWEGGFPPEGRYRYY
ILSHEEAAAEATTAAGGGGGGGGGGGGGGGLKERYHFVIIGEGTAADAAM
ESILRVQPEAEILCLSDETPSPADDSSNTHTGAYESDFRLLKSDLAASFN
QWRRHLTFRMEDFTGGRSSGSSSSSGGTGARTGDAERGRVGGGGGGHLGE
WERRSVYGLSRGKEIRYHTYQPHDLVIEPERRCVRLLLDGTEVYFDRCLI
ANSGE
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mRNA from alignment at L-elsbetiae_contig13054:239..4663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13054.2417.1 ID=mRNA_L-elsbetiae_contig13054.2417.1|Name=mRNA_L-elsbetiae_contig13054.2417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4425bp|location=Sequence derived from alignment at L-elsbetiae_contig13054:239..4663- (Laminarionema elsbetiae ELsaHSoW15)
TCCGAACAACAGCAACAGCAGCAGTCTAGCCGGTCCGCGTCGTGCGTGGG
GCTGGGAGTCGGGGCGCTTCTGACGGCGGGAGGCCTGCTCCTCGCTATCC
AAGGCCTGCCAGCCTCTGGAAACCCAGCGGCGATGGAGGCGGAGGGAGGG
CGCGGTGACGCCCGCTGCAGCTCTGCCGGTAGGGGAGAGGGGGCCTGCTG
CGTGTGCCTGACTGCCTGATTGAGGCCGTAAAAAAATAAAAATAAACTGC
CACGAATGTTATTGATAAAAATAAATATGTACCAGTTTTTTTTGGGAAGA
ACGGATTTGGTTTTATGTACCGCCCGCTCATTCAAGCTGCCGGGTATTTT
AGTCGTTTATTTTTTCGTGCTGCAAGGAAGGGACTCGTCCTGTCAGACGT
GCTTCCGTGGATTAGAACCTGTCTCTGGGAAGCCTCGGGGGGAGGCTTGT
GCCCGGTCCGATCGTGATGATTCCTGTACTTTGGGTCATGCCTCTACATG
GATCAGTCGGTCTTCTGCATACATGGATAGATACACGCGTTCTTTGAATT
ATTAATATATTGCAGTCTTATGCTGTGTCCGCTCTCGAGTCCTGGAGACG
GGGTAGCAGCGGCCGAGCGTGGAACGGTCCTGACCCTCTTCTTTGTTTCA
GGGGCTCAGGAAAAGCGCACACCCCTTCATGTAGTGAGTGCCATAAATGG
CGTGCTTTGGCGCTGCGGCGCGCCTGTCTACTCGGGTGCTTCTTTGCTGC
TGCGCATGGACCTGGTTTTTCCCGTCATTTCAGTTCTGTGTGTTCGCTCG
GTACAATAGTGCTCGGTAGACAGCAGGGGCAGCAGCAGAAATCCCAAACG
AAGACAACGAAACACCACACAACGCACCGAAACACACACGCACACACACA
AACACACACACACACACACACACACACACGGCAAACACAGCAGTAATTTC
GCGGCCAAACCATACGTCACCAAACCAACAAATGTGCCCCCCGAACAGGT
CCTTCTGCTGCTGCTGCTGCTGCTGCTGACGCTGACGACTCCGACCAGCT
GCAGCAGTCGGACGGGACCGGCGGAGACACCAAGGACAACGAAACCTCGC
CGCCGCCGCCGCCGTGGGACAGCGGAGATGGACCCCCCCCTCCTCATGGT
GGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCAGCGGGGG
AGGGGACGGGGACGGGGACGGCGGTGAGTGGGAGGGCGGCTTTCCCCCCG
AAGGTCGCTACAGATATTACATTCTTAGCCACGAGGAAGCGGCAGCGGAG
GCCACGACCGCCGCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGCTGAAGGAGCGATATCACTTTGTGATAATCGGGGAAGGCA
CGGCGGCGGACGCGGCTATGGAGTCGATCCTGAGGGTGCAGCCGGAGGCG
GAGATTCTCTGCCTCAGCGACGAGACTGTGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGATAGAGAGAGAGAA
CCTGCTTGTTACACTTGCTTGCGTCCGGGAGAAGTCAATTTTGTTGGGTG
CCCACTTTTTTTGTCCCCGCTCCCCGCGCGGGGGCCGCCGGAGACGAACT
GTTGGCATACACTTCGTATCGAGCCGTTAGATACGAAAGGCCACCCGGAT
TTTTTAGTGGCTTGTGGTGGGTTCCCGCAGAGCGGGCCCGTTAGATACGG
AAGACCACCCGGTTGCACACGAACGGGGGGAGATTTAGCTGTACGGGTAG
AGCACGACCAGCCCACCCCACCGTGCGCGGGGATAGGGTATTTTATTTCG
GAAGTATGTAGTGGTTGTTTTGGCAAGGACATCACTTTGTGCTGCTGTAT
TTAGAAGCAAGTGTTTTGGCAAAAACACATTGGATGAGCTACGCAGAAGC
TGGCCGGCTCTGCTCTTCTTGTGTGATAACTCGCGAGGAACCCCGCGCCA
GGGATATAGATTCTAGCAGTCGGCTTTCGGAATATGGTACATACGGCGCT
TCGTGGTGCGAGGATCCATGCCCATTTTATTCTCCACATCGGTTGACTGC
TGTTTGGCATAATAATACCTCGAATGATGATGGCACCAGCAGTCCAATAC
TTCTGCCCCATATCTGTTGGGCCGCTCGTCGCCGTGTCCGAATGGATGTA
TGTATGAATGTGCCTTGCATGATTTTCGGCAAAAGGCCCTTCCCTACCAA
CTTGTACTGAATGCGGGTCTTGTAGCAACTGTGTTTATCCGCTTAGTTAT
CTCTCTTTCTCTCTCTCTCTCTTTCTCTCTCCTGTAGCCGTCCCCTGCAG
ACGACAGCAGCAACACCCACACCGGCGCCTACGAGTCTGACTTCCGGCTC
CTCAAGTCCGACCTGGCGGCCTCCTTCAACCAGTGGCGGAGACACCTCAC
CTTCCGGATGGAGGATTTCACCGGCGGACGCAGCAGCGGCAGCAGCAGCA
GCAGCGGTGGCACGGGTGCTCGCACCGGCGACGCGGAGAGAGGAAGGGTT
GGCGGCGGCGGCGGCGGTCATCTCGGCGAGTGGGAGCGGAGGTCGGTCTA
CGGCCTATCGAGGGGGAAGGAGATACGGTATCACACCTACCAGGTGGGTT
AGATCGGCGGGCGGGCAACGCGTGTTCCGTGACTGCTGTAGGGTGTGTGT
GTGTGTGGGGGGGGTATTGCATTGTTTCTACCGTGAGCTGGCCCTTTTCT
CATGCCCCCTGTACTGACGTGCCTTTTGGAGATAAAGGGCCTACACAAGC
ATGCCAAATTCGGCTCGGGCAGGTGGCGTACCTTGCATGCGTGCCATATG
TACTGCCTCCATACAGATCACTATATACCTATGTACGTTTTGCACGTGAT
CTGTCCTCTCATGGCCGGTTAGCAGAGAACGGCAAATTATCATTATCGCC
GAAGGCCAACGGTGACGTCACCGCCTTGTCGCCTCGTCTTGTCTCGGGTA
CCGGAAGTGCCAAAGCGGTGGTGGCACACTTGTGAAGTTGACCGTGGGAT
GTATACATACTATCGTAGGTGACATAAGATAAGACACCCCCTGGACCGAG
ATTGAAAGCTTGGTGACTCCGCAACGAATACGATTCTAACCACAAGCGCC
ACATTTTCGGACAGCTCTCGACGAGATCTTTCCAATGCCGCCCTTTTCGG
GACTGACGCTCTGCTTGCTGTGGAGTACTTGAGCTTTAAAAATCGGTCCA
GGGGGTGTCTTATCTTATGTCACCTACGGTACATGAATAGGTGCTTTATA
TACCATATATACTTCGTCCAACACATACAGAAGTAAAGTGAGTTACATAT
GTTTACACGGGCCCTGAGCCGTGTCCGATGCCAAAAAGTGAAGGCATTTT
GAAATCCTCGTCGTTTTTTGAGTTGAAACCTGTTTTTTTTTTTTTTTCTG
TGCAGCTTCCTGCACATGCCAGCGGCTGAGAAAAAAAAGGCGGCCCCTAG
AAGACCCTTTTTTGCACTTTTTTCGGAATAGAGAAGAAAAATGAAAATCT
GGAAAGTGACAAAAAAAACGCTCAAAAGTGCCAAGTTCGACTTTTGTTTC
GATTGGATGCTTTTGGGCAAAGTACCCACGCCTTGTTTGAAAGCAAATCG
TCATGTGGTAGATTTGTTTCTCATGGAACCAGGCAAATTTCGCCATCTTT
CGGCTGAAAAGTGTAAGAATCGGCCGAAATCGGCCTCTATATTTGGTCGA
AATTGACCCACAATTTCTCAACAATTACAAGCCGTTTTTTTTTTCTTTGA
ACATCTCCGTAACGTTATCTTTCCCAAGAAAGAACCTAACTATAAGCATT
GCACACCATTCCGTTCAAAAAATATGATCTGTGCCCCACAACTCACTTTA
CTTTTGTGTTGGAGGAAGTATACCTGAGTACACACGACTGACTACATACA
AGCTCTAACGGGGCCTCAACAGCGAGGGGGGGGGTGATCGCTCTAAAGCA
CTGCCGTCTCTGCGTTCGCATCTCTCGTCTAACCCCTTCTATGTAGTTGG
GTGCCCTCTCGCGCTTTGGGCATCAACGATTGCTCGGTTTTGCCTGCGGC
AATGCCCCTCCTCTCCACCCCAGGTTTCCTACGGCAGTTGCCAAATACAA
CTATTTATTTATCCAACTCTCTCTCTCTCTCATTCTCTCTCTCTCTCTCT
CTCTCTCTCTGATCCTCCCTCTCTTTCTCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCTCTCT
ATGGCGCCATTTACCAAAATCAGCCGCACGACCTGGTGATCGAGCCGGAG
CGGCGATGCGTGCGTCTGCTGCTGGACGGGACGGAGGTGTACTTCGACAG
GTGTCTCATCGCGAACTCCGGTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13054:239..4663-

>mRNA_L-elsbetiae_contig13054.2417.1 ID=mRNA_L-elsbetiae_contig13054.2417.1|Name=mRNA_L-elsbetiae_contig13054.2417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2130bp|location=Sequence derived from alignment at L-elsbetiae_contig13054:239..4663- (Laminarionema elsbetiae ELsaHSoW15)
TCCGAACAACAGCAACAGCAGCAGTCTAGCCGGTCCGCGTCGTGCGTGGG
GCTGGGAGTCGGGGCGCTTCTGACGGCGGGAGGCCTGCTCCTCGCTATCC
AAGGCCTGCCAGCCTCTGGAAACCCAGCGGCGATGGAGGCGGAGGGAGGG
CGCGGTGACGCCCGCTGCAGCTCTGCCGTCCGAACAACAGCAACAGCAGC
AGTCTAGCCGGTCCGCGTCGTGCGTGGGGCTGGGAGTCGGGGCGCTTCTG
ACGGCGGGAGGCCTGCTCCTCGCTATCCAAGGCCTGCCAGCCTCTGGAAA
CCCAGCGGCGATGGAGGCGGAGGGAGGGCGCGGTGACGCCCGCTGCAGCT
CTGCCGGTCCTTCTGCTGCTGCTGCTGCTGCTGCTGACGCTGACGACTCC
GACCAGCTGCAGCAGTCGGACGGGACCGGCGGAGACACCAAGGACAACGA
AACCTCGCCGCCGCCGCCGCCGTGGGACAGCGGAGATGGACCCCCCCCTC
CTCATGGTGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGGCGGC
AGCGGGGGAGGGGACGGGGACGGGGACGGCGGTGAGTGGGAGGGCGGCTT
TCCCCCCGAAGGTCGCTACAGATATTACATTCTTAGCCACGAGGAAGCGG
CAGCGGAGGCCACGACCGCCGCCGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGCTGAAGGAGCGATATCACTTTGTGATAATCGG
GGAAGGCACGGCGGCGGACGCGGCTATGGAGTCGATCCTGAGGGTGCAGC
CGGAGGCGGAGATTCTCTGCCTCAGCGACGAGACTGTCCTTCTGCTGCTG
CTGCTGCTGCTGCTGACGCTGACGACTCCGACCAGCTGCAGCAGTCGGAC
GGGACCGGCGGAGACACCAAGGACAACGAAACCTCGCCGCCGCCGCCGCC
GTGGGACAGCGGAGATGGACCCCCCCCTCCTCATGGTGGCGGCGGCGGTG
GCGGCGGCGGTGGCGGCGGCGGCGGCGGCAGCGGGGGAGGGGACGGGGAC
GGGGACGGCGGTGAGTGGGAGGGCGGCTTTCCCCCCGAAGGTCGCTACAG
ATATTACATTCTTAGCCACGAGGAAGCGGCAGCGGAGGCCACGACCGCCG
CCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTG
AAGGAGCGATATCACTTTGTGATAATCGGGGAAGGCACGGCGGCGGACGC
GGCTATGGAGTCGATCCTGAGGGTGCAGCCGGAGGCGGAGATTCTCTGCC
TCAGCGACGAGACTCCGTCCCCTGCAGACGACAGCAGCAACACCCACACC
GGCGCCTACGAGTCTGACTTCCGGCTCCTCAAGTCCGACCTGGCGGCCTC
CTTCAACCAGTGGCGGAGACACCTCACCTTCCGGATGGAGGATTTCACCG
GCGGACGCAGCAGCGGCAGCAGCAGCAGCAGCGGTGGCACGGGTGCTCGC
ACCGGCGACGCGGAGAGAGGAAGGGTTGGCGGCGGCGGCGGCGGTCATCT
CGGCGAGTGGGAGCGGAGGTCGGTCTACGGCCTATCGAGGGGGAAGGAGA
TACGGTATCACACCTACCAGCCGTCCCCTGCAGACGACAGCAGCAACACC
CACACCGGCGCCTACGAGTCTGACTTCCGGCTCCTCAAGTCCGACCTGGC
GGCCTCCTTCAACCAGTGGCGGAGACACCTCACCTTCCGGATGGAGGATT
TCACCGGCGGACGCAGCAGCGGCAGCAGCAGCAGCAGCGGTGGCACGGGT
GCTCGCACCGGCGACGCGGAGAGAGGAAGGGTTGGCGGCGGCGGCGGCGG
TCATCTCGGCGAGTGGGAGCGGAGGTCGGTCTACGGCCTATCGAGGGGGA
AGGAGATACGGTATCACACCTACCAGCCGCACGACCTGGTGATCGAGCCG
GAGCGGCGATGCGTGCGTCTGCTGCTGGACGGGACGGAGGTGTACTTCGA
CAGGTGTCTCATCGCGAACTCCGGTGAGCCGCACGACCTGGTGATCGAGC
CGGAGCGGCGATGCGTGCGTCTGCTGCTGGACGGGACGGAGGTGTACTTC
GACAGGTGTCTCATCGCGAACTCCGGTGAG
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