mRNA_L-elsbetiae_contig13045.2412.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13045.2412.1
Unique NamemRNA_L-elsbetiae_contig13045.2412.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13045.2412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13045contigL-elsbetiae_contig13045:3707..5236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size383
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13045.2412.1prot_L-elsbetiae_contig13045.2412.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13045 3707..5236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.3106542-CDS-L-elsbetiae_contig13045:3706..37761622815487.3106542-CDS-L-elsbetiae_contig13045:3706..3776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 3707..3776 -
1691682921.9044678-CDS-L-elsbetiae_contig13045:3706..37761691682921.9044678-CDS-L-elsbetiae_contig13045:3706..3776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 3707..3776 -
1622815487.3236961-CDS-L-elsbetiae_contig13045:4323..44341622815487.3236961-CDS-L-elsbetiae_contig13045:4323..4434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 4324..4434 -
1691682921.914624-CDS-L-elsbetiae_contig13045:4323..44341691682921.914624-CDS-L-elsbetiae_contig13045:4323..4434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 4324..4434 -
1622815487.337692-CDS-L-elsbetiae_contig13045:5036..52361622815487.337692-CDS-L-elsbetiae_contig13045:5036..5236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 5037..5236 -
1691682921.9251435-CDS-L-elsbetiae_contig13045:5036..52361691682921.9251435-CDS-L-elsbetiae_contig13045:5036..5236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13045 5037..5236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13045.2412.1

>prot_L-elsbetiae_contig13045.2412.1 ID=prot_L-elsbetiae_contig13045.2412.1|Name=mRNA_L-elsbetiae_contig13045.2412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
LWSSASLIHVINSISPSQVKDIDISSTPHSCSVEENLEPKLAWLRERLGL
EGPDIGTMARRCPSIFIYSVEENLEPKLVWLRERLGLEEPNVASMVRHAP
GIFGCSVEENLEPKLAWLQNRMHLTKM
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mRNA from alignment at L-elsbetiae_contig13045:3707..5236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13045.2412.1 ID=mRNA_L-elsbetiae_contig13045.2412.1|Name=mRNA_L-elsbetiae_contig13045.2412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig13045:3707..5236- (Laminarionema elsbetiae ELsaHSoW15)
CTCTGGAGCTCTGCATCTCTAATACATGTGATAAACTCGATCTCTCCTTC
TCAAGTAAAGGACATAGATATATCGTCAACACCTCACAGCTGTAGCGTGG
AGGAGAACCTGGAGCCGAAGCTGGCGTGGCTAAGGGAGCGGCTGGGGCTG
GAGGGGCCGGATATTGGCACCATGGCCCGCCGTTGCCCCTCTATTTTCAT
GTAAGACTTCAAGACACACGATTAAAAAGAGAGCGCTTTTTTGCTTGCTG
TCTAGCTGGTGCTATTGGTTCTTGTTTTGTGCACGAGAAATAACGAAAGA
ACGCGCTGAACCCGCAAACATGACAAACTTTGCAGTTGAAACCGAAGACC
GGTGGATTTGAAGCGATCTGACTGAGCAGGGTAGGTGATCAGTGGCTTAT
GGTTTGGGAGGGCTTGCGTTTATTTCGCTGGGTGTATATTGCATCGTGTT
GGCACCATCGTATCCCCGCTGGGTGAGTGGCGGTGATGTGAACTCAAAGT
GGGCGCGTGCAGCCATCTGCCTGCTGTCAGCCATGCTAACCCGATACTCT
CCGCTCTTCGATGGTACGGTAGTCTCGACCCATGATTGGAGCCATGTATT
GCAGAGGCTACCTCGCCCCTCTCTCTGATAGGTTTGGTATCCCCCCCCCA
CCCTTTCCCCGTGCTCGATCGGCATGGGCTTGGCGTTCTCCGTGCTGTCC
TTGCTCGAGGGTGGTAATGTTGCAAATAAGTCGGGGCTCAGGACTGCCTC
CGGTTGCGTACCAAGACAATATCGACCCCCGTCGTTTGTTTTGATCTCAC
AGATACAGCGTGGAGGAGAACCTGGAGCCGAAGCTGGTGTGGCTAAGGGA
GCGGCTGGGGCTGGAGGAGCCGAATGTTGCCAGCATGGTCCGCCATGCCC
CCGGTATTTTCGGGTATGACTTCAAGGCACGCGATTCAGAAGTACCGTAT
TACACCGGCCACTTTAGCTTGCTGTCTAGCTGGCGTGTTTATTTTGCTTT
CGAGCACAAGAAAAACCGAAGGAACGCGCTGGACCCGCAAACATGACAAA
CTTTGCAGTTGAAACGGAAGACCGGCGGTTTTGAGGCGATCTGATTGAGC
AGATCGTGGGTGACTAGTGGCTTGCGGTTTGGTGGGCCTGCGTTTATTTC
ACCGGGTCGGTATTGCATCGTGTTGGCACCTACGTATCGCCGCTGTCAGC
CATTCTAACCCGATACTCTCCGCTCTTCCATGGTACGGTAGTCTCAACCC
ATAATTGAAGCCATGCATTGCAGAGGCTACCGCGCCCCTCTCTCCGATAT
GTTCAGTCACTTTCGCCGTGCTCGGTCGGCAAGGGCTTGACGTTCTCCGT
GCTGTCCTTGTTCGAGGGCGGTAGGGGTGCGGATAAATCGGGGCTCAGGA
CTGCCTACGGCTGCGTATGATGACAAAATCGACTCCCTCCGTTTGTTTTG
TATCTCACAGTTGTAGCGTGGAGGAGAACCTGGAGCCGAAGCTGGCGTGG
CTGCAAAACCGGATGCACTTGACCAAAATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13045:3707..5236-

>mRNA_L-elsbetiae_contig13045.2412.1 ID=mRNA_L-elsbetiae_contig13045.2412.1|Name=mRNA_L-elsbetiae_contig13045.2412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig13045:3707..5236- (Laminarionema elsbetiae ELsaHSoW15)
CTCTGGAGCTCTGCATCTCTAATACATGTGATAAACTCGATCTCTCCTTC
TCAAGTAAAGGACATAGATATATCGTCAACACCTCACAGCTGTAGCGTGG
AGGAGAACCTGGAGCCGAAGCTGGCGTGGCTAAGGGAGCGGCTGGGGCTG
GAGGGGCCGGATATTGGCACCATGGCCCGCCGTTGCCCCTCTATTTTCAT
CTCTGGAGCTCTGCATCTCTAATACATGTGATAAACTCGATCTCTCCTTC
TCAAGTAAAGGACATAGATATATCGTCAACACCTCACAGCTGTAGCGTGG
AGGAGAACCTGGAGCCGAAGCTGGCGTGGCTAAGGGAGCGGCTGGGGCTG
GAGGGGCCGGATATTGGCACCATGGCCCGCCGTTGCCCCTCTATTTTCAT
ATACAGCGTGGAGGAGAACCTGGAGCCGAAGCTGGTGTGGCTAAGGGAGC
GGCTGGGGCTGGAGGAGCCGAATGTTGCCAGCATGGTCCGCCATGCCCCC
GGTATTTTCGGATACAGCGTGGAGGAGAACCTGGAGCCGAAGCTGGTGTG
GCTAAGGGAGCGGCTGGGGCTGGAGGAGCCGAATGTTGCCAGCATGGTCC
GCCATGCCCCCGGTATTTTCGGTTGTAGCGTGGAGGAGAACCTGGAGCCG
AAGCTGGCGTGGCTGCAAAACCGGATGCACTTGACCAAAATGTTGTAGCG
TGGAGGAGAACCTGGAGCCGAAGCTGGCGTGGCTGCAAAACCGGATGCAC
TTGACCAAAATG
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