mRNA_L-elsbetiae_contig10194.241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10194.241.1
Unique NamemRNA_L-elsbetiae_contig10194.241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10194.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10194contigL-elsbetiae_contig10194:5838..6847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1010
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10194.241.1prot_L-elsbetiae_contig10194.241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10194 5962..6378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815249.8642893-UTR-L-elsbetiae_contig10194:5837..59611622815249.8642893-UTR-L-elsbetiae_contig10194:5837..5961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10194 5838..5961 +
1691682795.6037474-UTR-L-elsbetiae_contig10194:5837..59611691682795.6037474-UTR-L-elsbetiae_contig10194:5837..5961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10194 5838..5961 +
1622815249.889535-UTR-L-elsbetiae_contig10194:6378..68471622815249.889535-UTR-L-elsbetiae_contig10194:6378..6847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10194 6379..6847 +
1691682795.623049-UTR-L-elsbetiae_contig10194:6378..68471691682795.623049-UTR-L-elsbetiae_contig10194:6378..6847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10194 6379..6847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815249.87792-CDS-L-elsbetiae_contig10194:5961..63781622815249.87792-CDS-L-elsbetiae_contig10194:5961..6378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10194 5962..6378 +
1691682795.6143053-CDS-L-elsbetiae_contig10194:5961..63781691682795.6143053-CDS-L-elsbetiae_contig10194:5961..6378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10194 5962..6378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10194.241.1

>prot_L-elsbetiae_contig10194.241.1 ID=prot_L-elsbetiae_contig10194.241.1|Name=mRNA_L-elsbetiae_contig10194.241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MKLKKMTCCHPRCTMRPLFGMVGSMEKEFCSEHANPGMVKIKIMENKQKN
KNKTTDLAKPGKRCRHGKCTRPPSFGIVGSMEKKFCLEHTKPGMVMVTGK
GCRHPECTRQPRCGMVGSTEKEFCFFHAKPGMVNLCKL*
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mRNA from alignment at L-elsbetiae_contig10194:5838..6847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10194.241.1 ID=mRNA_L-elsbetiae_contig10194.241.1|Name=mRNA_L-elsbetiae_contig10194.241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1010bp|location=Sequence derived from alignment at L-elsbetiae_contig10194:5838..6847+ (Laminarionema elsbetiae ELsaHSoW15)
ACTTTCCCTGCGCGAAGGAGGAGCGCGCAAGAAGTGCGACCACTCGGGGT
GCACCGCGAACCCGCGCTTCGGCGTGGTCGGCAGTAAGGAGGCGAAGTTT
TGCCCTAAGCATGCCAAGCCGACAATGAAGCTCAAAAAGATGACGTGCTG
CCACCCACGGTGCACTATGCGGCCGCTCTTCGGCATGGTCGGCAGCATGG
AAAAAGAGTTCTGCTCCGAACACGCCAATCCAGGAATGGTCAAGATCAAG
ATCATGGAGAACAAGCAGAAGAACAAAAATAAGACGACTGATCTTGCCAA
GCCAGGAAAAAGGTGCCGCCACGGAAAGTGCACTAGGCCGCCGAGCTTCG
GCATTGTCGGCAGCATGGAAAAAAAGTTCTGCCTCGAGCACACTAAGCCA
GGAATGGTCATGGTCACAGGAAAGGGGTGCCGCCACCCAGAGTGCACTAG
GCAGCCGCGCTGCGGCATGGTCGGCAGCACGGAAAAAGAGTTCTGCTTCT
TTCATGCCAAGCCAGGAATGGTCAACCTATGCAAGCTATGACAGATGACC
GAAGTTTGGGGGGTTGATGGCGGGTTGTAAGCCTCCAATGCTCGTTGTGC
GTGGTGGAATGCGCGGTGGTAGGGCCAGGTTGTTCAACCATGCCGTCACC
GTAAATTTTTCTTTTCTTTTCTTACGGGTACCCACGTTTACCAGCGCTCG
GGCGAGGGTCCGAGCAAATTTAGAAGCAGCGCACCATTTTTGGGGCTATT
TCAAACTAGATGAATAGTGTGAGAATATACGTGGCATCGGGGAAGGGGGC
TGAAGCGTCAATGGGCTTTCGGATGGAGTGTTGACGACGGTTGTAGTCTG
GCGGCGGTATAAAGTTTGTAGACTGTCTATGAGAGAGAGGGGAAAGAAGT
CCCGGCTTCGTGCTCCTAGTCGTGAGGAAATCGGATTGATATCCTGACGA
ACAGAGGCTTCCGTGACATATCTAGATAGAAATGAATAATGAGAGATGAC
ATATTCTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10194:5838..6847+

>mRNA_L-elsbetiae_contig10194.241.1 ID=mRNA_L-elsbetiae_contig10194.241.1|Name=mRNA_L-elsbetiae_contig10194.241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig10194:5838..6847+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTCAAAAAGATGACGTGCTGCCACCCACGGTGCACTATGCGGCC
GCTCTTCGGCATGGTCGGCAGCATGGAAAAAGAGTTCTGCTCCGAACACG
CCAATCCAGGAATGGTCAAGATCAAGATCATGGAGAACAAGCAGAAGAAC
AAAAATAAGACGACTGATCTTGCCAAGCCAGGAAAAAGGTGCCGCCACGG
AAAGTGCACTAGGCCGCCGAGCTTCGGCATTGTCGGCAGCATGGAAAAAA
AGTTCTGCCTCGAGCACACTAAGCCAGGAATGGTCATGGTCACAGGAAAG
GGGTGCCGCCACCCAGAGTGCACTAGGCAGCCGCGCTGCGGCATGGTCGG
CAGCACGGAAAAAGAGTTCTGCTTCTTTCATGCCAAGCCAGGAATGGTCA
ACCTATGCAAGCTATGAATGAAGCTCAAAAAGATGACGTGCTGCCACCCA
CGGTGCACTATGCGGCCGCTCTTCGGCATGGTCGGCAGCATGGAAAAAGA
GTTCTGCTCCGAACACGCCAATCCAGGAATGGTCAAGATCAAGATCATGG
AGAACAAGCAGAAGAACAAAAATAAGACGACTGATCTTGCCAAGCCAGGA
AAAAGGTGCCGCCACGGAAAGTGCACTAGGCCGCCGAGCTTCGGCATTGT
CGGCAGCATGGAAAAAAAGTTCTGCCTCGAGCACACTAAGCCAGGAATGG
TCATGGTCACAGGAAAGGGGTGCCGCCACCCAGAGTGCACTAGGCAGCCG
CGCTGCGGCATGGTCGGCAGCACGGAAAAAGAGTTCTGCTTCTTTCATGC
CAAGCCAGGAATGGTCAACCTATGCAAGCTATGA
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