mRNA_L-elsbetiae_contig13031.2405.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13031.2405.1
Unique NamemRNA_L-elsbetiae_contig13031.2405.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13031.2405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13031contigL-elsbetiae_contig13031:4507..4913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.5710187-CDS-L-elsbetiae_contig13031:4506..45791622815486.5710187-CDS-L-elsbetiae_contig13031:4506..4579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13031 4507..4579 -
1691682921.5353997-CDS-L-elsbetiae_contig13031:4506..45791691682921.5353997-CDS-L-elsbetiae_contig13031:4506..4579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13031 4507..4579 -
1622815486.5856497-CDS-L-elsbetiae_contig13031:4707..49131622815486.5856497-CDS-L-elsbetiae_contig13031:4707..4913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13031 4708..4913 -
1691682921.549016-CDS-L-elsbetiae_contig13031:4707..49131691682921.549016-CDS-L-elsbetiae_contig13031:4707..4913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13031 4708..4913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13031.2405.1prot_L-elsbetiae_contig13031.2405.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13031 4507..4913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13031.2405.1

>prot_L-elsbetiae_contig13031.2405.1 ID=prot_L-elsbetiae_contig13031.2405.1|Name=mRNA_L-elsbetiae_contig13031.2405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MQVNMDMHFNIAKGDFALEIIIFLGKRRPSFGSEHLYNALIRNIDACVVK
GDTYDLAFNECKSLFQDRNNYGEDIEWLVESIGDRLSYAEKMS
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mRNA from alignment at L-elsbetiae_contig13031:4507..4913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13031.2405.1 ID=mRNA_L-elsbetiae_contig13031.2405.1|Name=mRNA_L-elsbetiae_contig13031.2405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=407bp|location=Sequence derived from alignment at L-elsbetiae_contig13031:4507..4913- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGTTAACATGGACATGCACTTCAACATCGCCAAGGGAGATTTTGC
GCTGGAAATAATAATATTTTTGGGGAAGCGTCGCCCGTCCTTCGGTTCGG
AACACCTTTATAACGCCTTGATACGCAATATTGACGCATGTGTCGTCAAG
GGTGACACCTACGACCTGGCCTTCAACGAGTGCAAGAGCTTATTTCAAGA
CAGAAAGTGAGTAAATATAGGGATCAATGCGTGATTAAGCAAAGTTAGGT
GCCATATCGCTGTAATATCTGATATATAAATACATGTACCAAACCCTGAA
AAACTATACGTCACTTGTCTGTATGCACACTCAGCAACTACGGCGAAGAC
ATCGAGTGGCTCGTCGAAAGCATCGGGGACAGGCTATCGTACGCGGAAAA
GATGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13031:4507..4913-

>mRNA_L-elsbetiae_contig13031.2405.1 ID=mRNA_L-elsbetiae_contig13031.2405.1|Name=mRNA_L-elsbetiae_contig13031.2405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig13031:4507..4913- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGTTAACATGGACATGCACTTCAACATCGCCAAGGGAGATTTTGC
GCTGGAAATAATAATATTTTTGGGGAAGCGTCGCCCGTCCTTCGGTTCGG
AACACCTTTATAACGCCTTGATACGCAATATTGACGCATGTGTCGTCAAG
GGTGACACCTACGACCTGGCCTTCAACGAGTGCAAGAGCTTATTTCAAGA
CAGAAAATGCAGGTTAACATGGACATGCACTTCAACATCGCCAAGGGAGA
TTTTGCGCTGGAAATAATAATATTTTTGGGGAAGCGTCGCCCGTCCTTCG
GTTCGGAACACCTTTATAACGCCTTGATACGCAATATTGACGCATGTGTC
GTCAAGGGTGACACCTACGACCTGGCCTTCAACGAGTGCAAGAGCTTATT
TCAAGACAGAAACAACTACGGCGAAGACATCGAGTGGCTCGTCGAAAGCA
TCGGGGACAGGCTATCGTACGCGGAAAAGATGTCGCAACTACGGCGAAGA
CATCGAGTGGCTCGTCGAAAGCATCGGGGACAGGCTATCGTACGCGGAAA
AGATGTCG
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