mRNA_L-elsbetiae_contig1302.2397.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1302.2397.1
Unique NamemRNA_L-elsbetiae_contig1302.2397.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1302.2397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1302contigL-elsbetiae_contig1302:4320..5189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size870
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1302.2397.1prot_L-elsbetiae_contig1302.2397.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1302 4413..4940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.05978-UTR-L-elsbetiae_contig1302:4319..44121622815485.05978-UTR-L-elsbetiae_contig1302:4319..4412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 4320..4412 +
1691682920.9484203-UTR-L-elsbetiae_contig1302:4319..44121691682920.9484203-UTR-L-elsbetiae_contig1302:4319..4412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 4320..4412 +
1622815485.0862503-UTR-L-elsbetiae_contig1302:4940..51891622815485.0862503-UTR-L-elsbetiae_contig1302:4940..5189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 4941..5189 +
1691682920.9689982-UTR-L-elsbetiae_contig1302:4940..51891691682920.9689982-UTR-L-elsbetiae_contig1302:4940..5189Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 4941..5189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.0742185-CDS-L-elsbetiae_contig1302:4412..49401622815485.0742185-CDS-L-elsbetiae_contig1302:4412..4940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1302 4413..4940 +
1691682920.958599-CDS-L-elsbetiae_contig1302:4412..49401691682920.958599-CDS-L-elsbetiae_contig1302:4412..4940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1302 4413..4940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1302.2397.1

>prot_L-elsbetiae_contig1302.2397.1 ID=prot_L-elsbetiae_contig1302.2397.1|Name=mRNA_L-elsbetiae_contig1302.2397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MSPTKNNKNRKQTKTNKNKQKQKRAKTKKHTKTPKVVCNSLRCCVARMRK
VSYYTVQKTCTANKKHTRHTARMIKQNVHNNQTYPKPCPTTSEAIFQTLI
HSPESSSTPGSRCTTRIGQNQQKRSPVTPRRRTGHGNEIYSGLLARALPE
SRAAAEGNQQLSNNNKKINRCTKNK*
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mRNA from alignment at L-elsbetiae_contig1302:4320..5189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1302.2397.1 ID=mRNA_L-elsbetiae_contig1302.2397.1|Name=mRNA_L-elsbetiae_contig1302.2397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1302:4320..5189+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCACGCACCTAGAAACGTGCCCTGTGTTACGTGACGCACGAGGCGCGC
TACATAAAATGACGCACGGCACACGCCTTTTGTCTCACTGATCATGAGCC
CAACAAAAAACAACAAAAACAGAAAACAAACAAAAACAAACAAAAACAAA
CAAAAACAGAAGAGAGCGAAAACGAAAAAGCATACGAAAACACCAAAAGT
GGTATGTAATTCTCTTCGGTGTTGTGTAGCACGCATGCGAAAAGTGAGCT
ATTATACAGTACAAAAGACATGTACCGCAAACAAAAAACACACAAGACAC
ACGGCACGAATGATAAAACAAAATGTACACAACAATCAGACCTATCCAAA
ACCCTGCCCCACAACCTCCGAAGCAATCTTTCAAACTTTGATCCACAGCC
CGGAGTCGTCATCCACCCCTGGCTCCCGATGTACGACTAGAATCGGCCAA
AACCAACAGAAGCGCTCACCTGTCACGCCCCGGCGACGGACAGGGCATGG
AAATGAAATATACTCCGGGTTGCTTGCGAGGGCTCTGCCCGAGAGTAGAG
CTGCCGCAGAAGGAAACCAACAGCTCTCGAATAATAACAAGAAAATAAAT
CGCTGCACCAAAAACAAATAAATCTAGATGGATACCCAAAAAAACACACA
CACCAGACACAAGCAGCTAGCTCAAAGCGATGCTTGTGCCGGAGAGGCAC
CGCAGGCGGATGCACGTATTTGGCTGCTGTACTAACGCGACGTATCCAGC
GACACCGTCGGACACCCGTACCACCGGGCACACCTTGCTCGCGCACGAAA
ATAACACACCGAAACATGTCGCGAGGACGACGACGCTGTCTGGTGTACGC
GCTTTCGAGGCCTGTCTACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1302:4320..5189+

>mRNA_L-elsbetiae_contig1302.2397.1 ID=mRNA_L-elsbetiae_contig1302.2397.1|Name=mRNA_L-elsbetiae_contig1302.2397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig1302:4320..5189+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCCAACAAAAAACAACAAAAACAGAAAACAAACAAAAACAAACAA
AAACAAACAAAAACAGAAGAGAGCGAAAACGAAAAAGCATACGAAAACAC
CAAAAGTGGTATGTAATTCTCTTCGGTGTTGTGTAGCACGCATGCGAAAA
GTGAGCTATTATACAGTACAAAAGACATGTACCGCAAACAAAAAACACAC
AAGACACACGGCACGAATGATAAAACAAAATGTACACAACAATCAGACCT
ATCCAAAACCCTGCCCCACAACCTCCGAAGCAATCTTTCAAACTTTGATC
CACAGCCCGGAGTCGTCATCCACCCCTGGCTCCCGATGTACGACTAGAAT
CGGCCAAAACCAACAGAAGCGCTCACCTGTCACGCCCCGGCGACGGACAG
GGCATGGAAATGAAATATACTCCGGGTTGCTTGCGAGGGCTCTGCCCGAG
AGTAGAGCTGCCGCAGAAGGAAACCAACAGCTCTCGAATAATAACAAGAA
AATAAATCGCTGCACCAAAAACAAATAAATGAGCCCAACAAAAAACAACA
AAAACAGAAAACAAACAAAAACAAACAAAAACAAACAAAAACAGAAGAGA
GCGAAAACGAAAAAGCATACGAAAACACCAAAAGTGGTATGTAATTCTCT
TCGGTGTTGTGTAGCACGCATGCGAAAAGTGAGCTATTATACAGTACAAA
AGACATGTACCGCAAACAAAAAACACACAAGACACACGGCACGAATGATA
AAACAAAATGTACACAACAATCAGACCTATCCAAAACCCTGCCCCACAAC
CTCCGAAGCAATCTTTCAAACTTTGATCCACAGCCCGGAGTCGTCATCCA
CCCCTGGCTCCCGATGTACGACTAGAATCGGCCAAAACCAACAGAAGCGC
TCACCTGTCACGCCCCGGCGACGGACAGGGCATGGAAATGAAATATACTC
CGGGTTGCTTGCGAGGGCTCTGCCCGAGAGTAGAGCTGCCGCAGAAGGAA
ACCAACAGCTCTCGAATAATAACAAGAAAATAAATCGCTGCACCAAAAAC
AAATAA
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