mRNA_L-elsbetiae_contig130.2378.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig130.2378.1
Unique NamemRNA_L-elsbetiae_contig130.2378.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig130.2378.1 vs. uniprot
Match: A0A6H5JTC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTC2_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 7.070e-120
Identity = 190/252 (75.40%), Postives = 208/252 (82.54%), Query Frame = 1 
Query:    1 MSKSANAKSGATRELLCSRCYKRESCVQCCGTRYCLRHFHTSNHSSDHPRKAFVMNQRAFDEQLPAFQEMWREAFLSVTEDVDRLSQDVNKKVADDPLASIGMAVDPAPKGRDP---------ENPLGASSLATKRXXXXXXXXXXAAVALDPFARRRTRPKSYWSVGNELDSSTERGSSAADERAAAIAAAAPRIGEYQCESCESENTSFDIIGGAAVGTRKAETFGKKDAPELILRVLCHACGNNWLEER 729
            MS  A + SG  RELLCSRCYKRESCVQCCGTRYCLRHFHTSNHSSDHP+KA VMN+RA D+QLPAF+EMWREAF SV +DV RLS+DV+K+V DDPLASIGMA+ P   G+ P         ++   ASS     XXXXXXXXXX    +DPFARRRTRPKSYW+VG+ELD+  E   SAADERAAAIAAAAPR GEYQCESCES+NTSFDIIGGAAVGTRKAETFGKKDAPELILRVLCHACGNNWLEER
Sbjct:    1 MSGGAKSSSGTARELLCSRCYKRESCVQCCGTRYCLRHFHTSNHSSDHPQKAIVMNRRALDDQLPAFREMWREAFQSVADDVGRLSRDVSKRVEDDPLASIGMALKPVRNGKHPXXXXXXXXHQSSGSASSXXXXXXXXXXXXXXXXXXXVDPFARRRTRPKSYWAVGHELDAPEEAEGSAADERAAAIAAAAPRAGEYQCESCESDNTSFDIIGGAAVGTRKAETFGKKDAPELILRVLCHACGNNWLEER 252
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig130.2378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTC2_9PHAE7.070e-12075.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig130contigL-elsbetiae_contig130:1192..3438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001820.1
Exons5
Model size732
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig130.2378.1prot_L-elsbetiae_contig130.2378.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig130 1192..3438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.7612376-CDS-L-elsbetiae_contig130:1191..13021622815481.7612376-CDS-L-elsbetiae_contig130:1191..1302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 1192..1302 +
1691682919.3531806-CDS-L-elsbetiae_contig130:1191..13021691682919.3531806-CDS-L-elsbetiae_contig130:1191..1302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 1192..1302 +
1622815481.7729523-CDS-L-elsbetiae_contig130:1720..18161622815481.7729523-CDS-L-elsbetiae_contig130:1720..1816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 1721..1816 +
1691682919.3619337-CDS-L-elsbetiae_contig130:1720..18161691682919.3619337-CDS-L-elsbetiae_contig130:1720..1816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 1721..1816 +
1622815481.7829337-CDS-L-elsbetiae_contig130:2343..26371622815481.7829337-CDS-L-elsbetiae_contig130:2343..2637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 2344..2637 +
1691682919.3765864-CDS-L-elsbetiae_contig130:2343..26371691682919.3765864-CDS-L-elsbetiae_contig130:2343..2637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 2344..2637 +
1622815481.7985036-CDS-L-elsbetiae_contig130:3019..31341622815481.7985036-CDS-L-elsbetiae_contig130:3019..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 3020..3134 +
1691682919.3904126-CDS-L-elsbetiae_contig130:3019..31341691682919.3904126-CDS-L-elsbetiae_contig130:3019..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 3020..3134 +
1622815481.809573-CDS-L-elsbetiae_contig130:3322..34381622815481.809573-CDS-L-elsbetiae_contig130:3322..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 3323..3438 +
1691682919.4066393-CDS-L-elsbetiae_contig130:3322..34381691682919.4066393-CDS-L-elsbetiae_contig130:3322..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig130 3323..3438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig130.2378.1

>prot_L-elsbetiae_contig130.2378.1 ID=prot_L-elsbetiae_contig130.2378.1|Name=mRNA_L-elsbetiae_contig130.2378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MSKSANAKSGATRELLCSRCYKRESCVQCCGTRYCLRHFHTSNHSSDHPR
KAFVMNQRAFDEQLPAFQEMWREAFLSVTEDVDRLSQDVNKKVADDPLAS
IGMAVDPAPKGRDPENPLGASSLATKRRRKEEQEKQAAAVALDPFARRRT
RPKSYWSVGNELDSSTERGSSAADERAAAIAAAAPRIGEYQCESCESENT
SFDIIGGAAVGTRKAETFGKKDAPELILRVLCHACGNNWLEER*
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mRNA from alignment at L-elsbetiae_contig130:1192..3438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig130.2378.1 ID=mRNA_L-elsbetiae_contig130.2378.1|Name=mRNA_L-elsbetiae_contig130.2378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2247bp|location=Sequence derived from alignment at L-elsbetiae_contig130:1192..3438+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAAGAGCGCGAACGCTAAATCAGGGGCGACCCGCGAGCTTCTCTG
CAGTCGATGCTACAAACGAGAATCGTGCGTGCAATGCTGCGGTACTCGTT
ATTGTCTCCGGGTAAGAGTACATACATTGAGAGAGGCCGAAAGTACTGTG
TTTTGGTCTAGACTATCTAGTCTACATCATTGTACTTTGCTGTATGAACA
CGTTCCTGTCGCTGAGCTGCTCGATTTGTGTGCGAGACTATATGTAGATT
ATGCGTTAATTTATTGGGGCGCTATCTTCTGCCTTGCTTTGCCGTCGAAG
CGGTCTGGTTTTCAAAAGTATAGATACAAAAAAAGTGGTTGGATCTCGGA
TTTGCAACAGGAGCGCGCGCACGCACAGCAAGAGGCAAGTAGTCAGTGGC
ACATTGCCCTGGTCATCTTTCTGCCGGAGACTATGTTGGCACCGCGCTTG
GTAATGTTGCGGTTTCCTGCTACTTACTGAACACATAAAATGTCTGAGTA
ACATTTAATTAAACTTCTGTGTGTTGCAGCACTTCCACACCAGCAACCAC
TCCAGCGACCACCCCCGGAAAGCATTCGTCATGAACCAAAGAGCGTTTGA
CGAGCAACTGCCAGCATTCCAGGAGGTGGGTGGGCGACAGCTCCGACTTC
TTACGACTGAATCTTCATAAGATTGCCAGTAGCTCCTCGTCGACTATGTA
GAACATGTTTATTTGCTTGTTCCTCCGCCGTGTCATAACATGACGACGCC
AAATGCGCCCGAGTTATTTGATTCAAGTGCACATATCGGATGCACGTACA
ATCGCTTTCAGCTCTCCCCCCGAAACTGGGAGCCTTTGAGATCATGGCAC
CAGCATGCTGGAGATGAAGGAAGGGTAACAGTCCAACACCTTCTCTGTGC
ACACGCTTCCGCATCGGCGCAGCACTCTCAGTGCCTGCAACTTTGGCGTC
TACCGTTCGTGGTGTAATGACATTGACATTGACATCCAGCGCGGCTATCA
CGGCGATGTTGATGCTGATAAGTCACAACGTTTTGTTGGCCGCAGACCCT
CGTCCAACACAAAAACCAAACCAGTAGTTTCGGAGCTGTCTATTACGGTC
AATGGTCGCAGACTCGTTTACTTTGCCGATTAACGTTTCGTTCGGCTCGT
AGATGTGGAGAGAAGCATTTTTGTCCGTCACAGAAGACGTGGACCGGCTT
TCTCAAGATGTCAACAAGAAGGTCGCGGATGACCCCCTCGCCTCAATCGG
CATGGCGGTTGACCCGGCGCCGAAAGGAAGAGACCCGGAAAATCCGCTGG
GTGCTAGTTCGTTGGCCACCAAGCGGCGGCGGAAGGAGGAGCAGGAGAAA
CAGGCGGCAGCGGTTGCTCTCGATCCCTTCGCGCGGCGAAGGACTCGGCC
AAAGAGTTACTGGTCCGTGGGGAACGAGCTGGACTCTTCAACAGAGGTGT
GTGGGAGAGGAGACGGATATGCTCTGATTTCTGATCTAGTGGAGCCCGCT
TACCGCATTGCAACTTCCTGACAGGGGCTAGTGCGCGTCAGCGAGAAGGT
CTGGTTTGCAGCACGACCTGGGAGTTATTTATTAGTGGGCTTCCAAATGT
CTTACGACGTAAGCAACTTGCTTGAGCATCATGTTGGGAAGGGAACCCTC
ATCGACTACTATTATTTTGCTTTCAAGTCCTGCAACAGTAGTCGCTTGCC
CAAAGTTCTGTATGTAAAGCATACCTAGCCAGCTCCCGTACGAAATATAC
TTTCCAGTCGACCATACCCTCGAGTTAAATCTGTCTCCCCTTTATACTGC
TGGCGTTTTAAACTACCTAATCTTCAAGCGGGGAAGTTCTGCAGCAGACG
AGAGGGCCGCCGCGATCGCCGCCGCCGCCCCTCGCATTGGCGAGTACCAG
TGCGAGTCGTGCGAGTCCGAGAACACGAGTTTCGACATCATAGGTAGGGG
CTGCTGTCGACGGTAGCCTTCTCCTCGTGGCTGCACTTGGTCCAAATCGT
GTCATCATGAGCTGCACGATTTTACCCCCCACTCGAAATATGCAAACCCT
GCGTCGACTTGGATACCTCCACCAACCTGTTCACATCGATCGGTGTTCTC
TCGCCTTGGATTTTGTGGTGATGTTGCTCAGGGGGCGCGGCCGTCGGCAC
TCGAAAGGCGGAAACTTTTGGGAAGAAGGATGCTCCCGAGCTGATCCTCA
GGGTGTTGTGCCATGCATGTGGCAATAATTGGCTCGAAGAACGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig130:1192..3438+

>mRNA_L-elsbetiae_contig130.2378.1 ID=mRNA_L-elsbetiae_contig130.2378.1|Name=mRNA_L-elsbetiae_contig130.2378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig130:1192..3438+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAAGAGCGCGAACGCTAAATCAGGGGCGACCCGCGAGCTTCTCTG
CAGTCGATGCTACAAACGAGAATCGTGCGTGCAATGCTGCGGTACTCGTT
ATTGTCTCCGGATGTCGAAGAGCGCGAACGCTAAATCAGGGGCGACCCGC
GAGCTTCTCTGCAGTCGATGCTACAAACGAGAATCGTGCGTGCAATGCTG
CGGTACTCGTTATTGTCTCCGGCACTTCCACACCAGCAACCACTCCAGCG
ACCACCCCCGGAAAGCATTCGTCATGAACCAAAGAGCGTTTGACGAGCAA
CTGCCAGCATTCCAGGAGCACTTCCACACCAGCAACCACTCCAGCGACCA
CCCCCGGAAAGCATTCGTCATGAACCAAAGAGCGTTTGACGAGCAACTGC
CAGCATTCCAGGAGATGTGGAGAGAAGCATTTTTGTCCGTCACAGAAGAC
GTGGACCGGCTTTCTCAAGATGTCAACAAGAAGGTCGCGGATGACCCCCT
CGCCTCAATCGGCATGGCGGTTGACCCGGCGCCGAAAGGAAGAGACCCGG
AAAATCCGCTGGGTGCTAGTTCGTTGGCCACCAAGCGGCGGCGGAAGGAG
GAGCAGGAGAAACAGGCGGCAGCGGTTGCTCTCGATCCCTTCGCGCGGCG
AAGGACTCGGCCAAAGAGTTACTGGTCCGTGGGGAACGAGCTGGACTCTT
CAACAGAGATGTGGAGAGAAGCATTTTTGTCCGTCACAGAAGACGTGGAC
CGGCTTTCTCAAGATGTCAACAAGAAGGTCGCGGATGACCCCCTCGCCTC
AATCGGCATGGCGGTTGACCCGGCGCCGAAAGGAAGAGACCCGGAAAATC
CGCTGGGTGCTAGTTCGTTGGCCACCAAGCGGCGGCGGAAGGAGGAGCAG
GAGAAACAGGCGGCAGCGGTTGCTCTCGATCCCTTCGCGCGGCGAAGGAC
TCGGCCAAAGAGTTACTGGTCCGTGGGGAACGAGCTGGACTCTTCAACAG
AGCGGGGAAGTTCTGCAGCAGACGAGAGGGCCGCCGCGATCGCCGCCGCC
GCCCCTCGCATTGGCGAGTACCAGTGCGAGTCGTGCGAGTCCGAGAACAC
GAGTTTCGACATCATAGCGGGGAAGTTCTGCAGCAGACGAGAGGGCCGCC
GCGATCGCCGCCGCCGCCCCTCGCATTGGCGAGTACCAGTGCGAGTCGTG
CGAGTCCGAGAACACGAGTTTCGACATCATAGGGGGCGCGGCCGTCGGCA
CTCGAAAGGCGGAAACTTTTGGGAAGAAGGATGCTCCCGAGCTGATCCTC
AGGGTGTTGTGCCATGCATGTGGCAATAATTGGCTCGAAGAACGATAGGG
GGCGCGGCCGTCGGCACTCGAAAGGCGGAAACTTTTGGGAAGAAGGATGC
TCCCGAGCTGATCCTCAGGGTGTTGTGCCATGCATGTGGCAATAATTGGC
TCGAAGAACGATAG
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