mRNA_L-elsbetiae_contig13.2375.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13.2375.1
Unique NamemRNA_L-elsbetiae_contig13.2375.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Match: A0A6H5JRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.800e-27
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    7 AATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYNDAWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCDHTPAPAPPTIVCAGELLT 321
            AATCT++ VS  G  SGTYR+VA +S Y+E +Y AGG DYY+++  N AWYI P +  YP YRTYDDA HPAD++  W  CD  +CD+        I CA    T
Sbjct:  126 AATCTNIAVSDLGSYSGTYREVAGTSSYEELFYMAGGTDYYYVYLSNSAWYISPNVVDYPKYRTYDDAAHPADITQSWAECDNVYCDYVEVATSMAITCAAATCT 230
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BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Match: D8LB13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB13_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.380e-26
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    7 AATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYNDAWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCD-HTPAPAPPTIVCAGELLTPA 327
            AATCTS+ +SG G  SGTYR++A +S YDE YY AGG DYY+++  N AWYI P +  YP YRTYDDA HPAD++L W  CD   CD   PA A   + CA  +   A
Sbjct:  326 AATCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYLSNSAWYISPNVVDYPKYRTYDDAGHPADITLGWAECDNASCDWDEPATASFNVTCADTVTATA 433
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BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Match: A0A6H5JUT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.670e-22
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 MRAATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYNDAWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCDHT-PAPAPPTIVCAG 309
            +R ATCT VV+S  G  SGTY +VA +S YD+ Y  A GV+ Y ++  N AW ++P  A YP YRTYDDA++PAD++LEW  CD  +CD   P+P+P  I C+G
Sbjct:   80 VRPATCTKVVLSDFGDFSGTYAEVADTS-YDKQYSMAAGVETYSIYLDNGAWNMQPIEAVYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCSG 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRD4_9PHAE3.800e-2750.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB13_ECTSI1.380e-2653.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT7_9PHAE4.670e-2250.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13contigL-elsbetiae_contig13:65017..69072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size723
Cds size723
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13.2375.1prot_L-elsbetiae_contig13.2375.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13 65017..69072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815480.271013-CDS-L-elsbetiae_contig13:65016..652111622815480.271013-CDS-L-elsbetiae_contig13:65016..65211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 65017..65211 +
1691682918.5006845-CDS-L-elsbetiae_contig13:65016..652111691682918.5006845-CDS-L-elsbetiae_contig13:65016..65211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 65017..65211 +
1622815480.2817364-CDS-L-elsbetiae_contig13:67281..674011622815480.2817364-CDS-L-elsbetiae_contig13:67281..67401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 67282..67401 +
1691682918.5115187-CDS-L-elsbetiae_contig13:67281..674011691682918.5115187-CDS-L-elsbetiae_contig13:67281..67401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 67282..67401 +
1622815480.2933927-CDS-L-elsbetiae_contig13:67885..680121622815480.2933927-CDS-L-elsbetiae_contig13:67885..68012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 67886..68012 +
1691682918.5223377-CDS-L-elsbetiae_contig13:67885..680121691682918.5223377-CDS-L-elsbetiae_contig13:67885..68012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 67886..68012 +
1622815480.3081133-CDS-L-elsbetiae_contig13:68791..690721622815480.3081133-CDS-L-elsbetiae_contig13:68791..69072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 68792..69072 +
1691682918.5339735-CDS-L-elsbetiae_contig13:68791..690721691682918.5339735-CDS-L-elsbetiae_contig13:68791..69072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 68792..69072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13.2375.1

>prot_L-elsbetiae_contig13.2375.1 ID=prot_L-elsbetiae_contig13.2375.1|Name=mRNA_L-elsbetiae_contig13.2375.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MRAATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYND
AWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCDHTPAPAPPTIV
CAGELLTPAPSQPPLPRPRSFFPPDGSPLSTPAPNSVTSGTDDLTTDAPS
PVDSRAIGDDSETIQPSSGDREIGDSETIQPSSGDSNEDLEAEGLPTDGD
DGGEEGGLSVGAIVGIIAGALVVIAGGGFAFAFKENDIHCC
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mRNA from alignment at L-elsbetiae_contig13:65017..69072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13.2375.1 ID=mRNA_L-elsbetiae_contig13.2375.1|Name=mRNA_L-elsbetiae_contig13.2375.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4056bp|location=Sequence derived from alignment at L-elsbetiae_contig13:65017..69072+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGCAGCGACTTGCACTAGCGTCGTCGTGTCCGGCACGGGGCTTTC
GTCGGGCACCTACAGGCAGGTAGCGCTCTCCTCTTTGTACGACGAAGGGT
ACTACAGGGCTGGGGGAGTCGACTACTACTGGATGTTCAAGTACAACGAC
GCGTGGTACATCGAGCCTCAGCTGGCCAGCTACCCTGTGTATCGAGTGAG
TCGGTGTGTTGCTCCCTCGCGCGCCTCACGTTTGCCAAAGTAGGTACCAC
GACAGGAAGAGCATCTGGGGGGAAAATCCCATACTTCGTTCTCGTCGGAT
GCCTTCTCAAGAAAAAATTTCAATATTGCAGAAGAGATGATGGGCGGATG
CCACTGGAGACGGGACTTGGGCGAGTTGTGAAGATGTGCTTGAATTCCTT
ACCGTATAGGCGAGACAGATCCTCCCTCTGCTTAGACCAGCCGCGGTGTA
AAATAGCGTAAACTTTCCGTTTTGGTAACTAGACTACGTGACAGCGTGTT
ACGGCACAGCTAGCTCTACCCGGGATCGGACACTGATAATGCCGGGGAGA
AACCCTCCGTTGAGAGGTGTACTAGTGATGCATCCTAGGAAACATTTCAA
TATCTGAATGGTTGTATTGCTGTTTAGATACGTATGACGAGGCAAGTGCC
GTTTACTTTGGCAGCAGTCTCGACTTCTTGGGGGGACAGCCTTCGTGTTC
AACCGATGCGAGTCTGAAGCAATGGCAGTCTGCGTTCCTAACGAAGCCAG
AGGTTTTGTTCTGTTGCTCTCATCCACCGTATTTCCTGCATAGGTCGCCT
AGATTCGTATCGTTCGCTCCGGAACAAGCTGCTGTGGCCCTTTGATTCAA
TCGTGGACATATGGTTCGATTGTCCGTGGCACACGTACGTGGCGTGACTT
TTGCAGACTTACGACGACGCCGTTCATCCCGTGGATATCACGCTCGAATG
GACCATATGCGACATCGAGTTTTGTGACCACATTCCTGCGCCGGCTCCCC
CAGCCTTCCTCTGCGCAAGTGAGTTAGTGCACCCTGTGTGCATCAAGGTT
GGGCGGCATGCGCTGCCGTTCAGCTGCAAAACTTTGCTCCGTATATCGCA
GTCGACCGATCAAAAACTCGTTGATGAATCATTCGCAACACATCCCCAAG
CACGCGGTGGAAAGGGCGTCACACGCAAGGACCAAGATTTACGACACAAC
AAACAGAGAGTGACCAATTTTTGAAGATTTCAGGCATGGGGCACAGTGCC
TCGACTGTAGTACGCGCACTAAGACTAGTTTTAACTCTACGTAGTAAACC
TGACGCGCGAGGAGCACGATGCTTCTCATTGTTTTGACGTCAATCAGTCC
TGTTCGTACCGCTTTCTTCTTGTTCTCCGCAGATGAGACCACAACCGCCG
ACGTTACGCCAGCATGTGAGTGTGCGGTCTAAGCTGATGCGCAGGAAGGA
CCCCTGCCGGCCGGATAAGAGTAGTACATAGCGCTCGAATAACATTTTGT
GTTTTTGCCTGTGGCGCCAACACGGTCCTCTGAGCGGTGGCCGGGAGTGG
GGCACAACGAGACGGACCTGTTTCACATCGGCCCTCGTTGTTTGCGTGAG
GGATCTCACGGCTCACTGTTTTGATTGTTGTCGGCGTGCCCGTTCACCTG
ACCATGCGATACGCAGGCAGAGGCTGTTTATCTAGCTAGACCTACGGTGT
TGTGTTGCATTTTTTCGTTTTTTTTTTATCGATCTCACTTTGTTTATGTA
TCCAGAACATTTTTGTGCTTTGCCTTGAAGAACGACGTATGGTTGCGTTG
CGCTCGTTCGTGCGTGCGTGTGCATCTTTTAGCGGCCTGCACGAGCGTCA
CCGTCTCGGGCACGGGCGCCCTGGACGGAGACTACGATGAAGTCTTCGTG
TCGTCCCTGTACGACGAGTCCTACACCATGCCTACAGGGGTCGACACCAA
CATTTTGTACAAGTACCAGAACGCGTGGTGGATAGAGCCCACGGACGCGG
GGTACCCCCAGTATCGGGTGAGTAGACGAGGACGGGAGGCATAAATACTA
CCACTGTCAGCGAGTTGTGTTTTTTGCCCCATTGTTCCCCTAGTGCCTGG
GTATGTACGGAACAGAAGAAGAGTAGTAACCAATGGCCGTGATTTTGCAT
GCTGCCAACTGTTGTCCGCACCCAAAACCTCGTGCACACGCGCTCCCTCT
CCCTCTCCCTAAACAAATGCCGGGTTCCTTCCTACGTTTGTACTTCCTAC
AAACGATAACCTCAGACGTACGACGACGCAACGCACCCCGCGGATGTCAG
CCTCGAGTGGACCTTGTGCGACATTGAGTTTTGCGACCACACTCCTGCGC
CGGCGCCGCCAACGATCGTCTGCGCGGGTGAGCTTGTTCAGGAACATGAG
ACGCGGGTGCCGTGCAATACATGTTGACCACGAGCGCCTCACGTACCAAA
GGTAGTGACACAACCAACGACCCTTTCCACGATCCGAAAACCGCCTATTG
ATATGTGGCTCCAACCGAGTGCGGTTTGGAGCTAGCCCGGCAGCATTGCC
GCTAGTATGGTATTTCTGTACCGCTTTTGAGGGAGAAAGCGGGGCTAGAT
ATATTCCCAGTATTTGTGGGTACCCACCCGGCTACACATAGGTTTGCAGA
GCGCTGGTACAAAAAATCAGGTCCAGTCCTCCTTCGAACCCCCATAAATT
GCAGGGAGGGCAGGGCCTCAAATGGCGAGCCGCCCCCCAGCTGCAACTTT
TCCGAAGCTTTGTCCATCACTCCGTGTCCAGGGTGTCTTTAAAACGACTG
CGCGGAGGGGGGGGCTTCATCTAAACAAGGTGCGGCAAAGGCATGCCCTC
TGCTGTGCTGACATCGGAGCTCACCCCCGCGCCTTCGCAACCGCCTCTCC
CACGCCCGCGGTCTTTCTTTCCCCCAGACGGAAGCCCTCTCTCAACTCCC
GCCCCGAATTCGGTCACCTCGGGCACGGATGACCTCACCACAGATGGTGA
GCCCGCCATTGGACGCGGCACTATCAGCCCCAGGTTGTGTAGTGAAAGCT
GGGGTATTGGCGGCGTGTTGTGCTCTTATTTGACGGGGCGGTGCGTGCGG
CACCGACGATCGCGTGTGCATCTGGCTGGCCCTTCACACTCGCGATGGTT
TGTGTACCGGGTAGGTGAGTCGAGGGGGTTGTTCCGATACAGATGCTGCC
GGCGCCCAACGTCGCTTACCCGTGCACTAATGTATGTACGCTATTTTCGC
TCCCGCCATCTTCACGCGACTTTCTTTTTTTGTCAGTCGATCCTCCCACG
CCGGCTCCTTTGGGCGACCATTCCACTTCGACTACTTCGAGCGACCCCAT
CACGCCAACACCAACGGCTTCCGATGTCATAGGTACGACAAGTTGATGTT
GTTCCGCTCGGCTAGATATATATAAGCGTTTGTCGTCTAGATTATGTATT
GTACATCCAAGGATGCGCACGTATAAAACACATGCCGAGACCGACCTGAG
AAGCTTTGCCAGAGGTAGATGCTCTTTGTTGCCTGGTCCAGCCGCTGCCT
TCCTCCCCGGTGCCCTGCGATCGATCCAGCTGGTATCATCGCTTGTTGTC
GCTCGGCCACATGGATATAGCGAGCGGGCTTTCTGGTGTTGTTGTTCCGA
ACACCTCACCAAGCCCATATTTCACGACGCCGCGCTTTGCTGTCCAATCC
GTTACACCAACCACATCATGATACCCACGCGTCGGCCTCCTCGTGTCTCG
TGCTCCGCAGACGAGTCTACCCCAGCGCCTTCGCCGGTCGACTCCCGCGC
AATCGGAGATGATAGCGAGACGATCCAACCTAGCTCCGGCGATCGCGAAA
TCGGAGACAGCGAAACGATCCAACCCAGCTCCGGCGACAGCAACGAAGAC
TTGGAGGCGGAAGGGTTGCCCACCGACGGCGACGACGGCGGCGAGGAGGG
CGGTCTCTCGGTTGGTGCAATCGTCGGGATCATTGCAGGGGCTCTTGTGG
TCATCGCCGGCGGCGGGTTTGCTTTTGCGTTCAAGGAAAACGACATCCAC
TGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13:65017..69072+

>mRNA_L-elsbetiae_contig13.2375.1 ID=mRNA_L-elsbetiae_contig13.2375.1|Name=mRNA_L-elsbetiae_contig13.2375.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig13:65017..69072+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGCAGCGACTTGCACTAGCGTCGTCGTGTCCGGCACGGGGCTTTC
GTCGGGCACCTACAGGCAGGTAGCGCTCTCCTCTTTGTACGACGAAGGGT
ACTACAGGGCTGGGGGAGTCGACTACTACTGGATGTTCAAGTACAACGAC
GCGTGGTACATCGAGCCTCAGCTGGCCAGCTACCCTGTGTATCGAATGCG
TGCAGCGACTTGCACTAGCGTCGTCGTGTCCGGCACGGGGCTTTCGTCGG
GCACCTACAGGCAGGTAGCGCTCTCCTCTTTGTACGACGAAGGGTACTAC
AGGGCTGGGGGAGTCGACTACTACTGGATGTTCAAGTACAACGACGCGTG
GTACATCGAGCCTCAGCTGGCCAGCTACCCTGTGTATCGAACGTACGACG
ACGCAACGCACCCCGCGGATGTCAGCCTCGAGTGGACCTTGTGCGACATT
GAGTTTTGCGACCACACTCCTGCGCCGGCGCCGCCAACGATCGTCTGCGC
GGGTGAGCTTACGTACGACGACGCAACGCACCCCGCGGATGTCAGCCTCG
AGTGGACCTTGTGCGACATTGAGTTTTGCGACCACACTCCTGCGCCGGCG
CCGCCAACGATCGTCTGCGCGGGTGAGCTTCTCACCCCCGCGCCTTCGCA
ACCGCCTCTCCCACGCCCGCGGTCTTTCTTTCCCCCAGACGGAAGCCCTC
TCTCAACTCCCGCCCCGAATTCGGTCACCTCGGGCACGGATGACCTCACC
ACAGATGCTCACCCCCGCGCCTTCGCAACCGCCTCTCCCACGCCCGCGGT
CTTTCTTTCCCCCAGACGGAAGCCCTCTCTCAACTCCCGCCCCGAATTCG
GTCACCTCGGGCACGGATGACCTCACCACAGATGCGCCTTCGCCGGTCGA
CTCCCGCGCAATCGGAGATGATAGCGAGACGATCCAACCTAGCTCCGGCG
ATCGCGAAATCGGAGACAGCGAAACGATCCAACCCAGCTCCGGCGACAGC
AACGAAGACTTGGAGGCGGAAGGGTTGCCCACCGACGGCGACGACGGCGG
CGAGGAGGGCGGTCTCTCGGTTGGTGCAATCGTCGGGATCATTGCAGGGG
CTCTTGTGGTCATCGCCGGCGGCGGGTTTGCTTTTGCGTTCAAGGAAAAC
GACATCCACTGCTGCCGCCTTCGCCGGTCGACTCCCGCGCAATCGGAGAT
GATAGCGAGACGATCCAACCTAGCTCCGGCGATCGCGAAATCGGAGACAG
CGAAACGATCCAACCCAGCTCCGGCGACAGCAACGAAGACTTGGAGGCGG
AAGGGTTGCCCACCGACGGCGACGACGGCGGCGAGGAGGGCGGTCTCTCG
GTTGGTGCAATCGTCGGGATCATTGCAGGGGCTCTTGTGGTCATCGCCGG
CGGCGGGTTTGCTTTTGCGTTCAAGGAAAACGACATCCACTGCTGC
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