mRNA_L-elsbetiae_contig13.2370.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13.2370.1
Unique NamemRNA_L-elsbetiae_contig13.2370.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13.2370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13contigL-elsbetiae_contig13:8845..10981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size650
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13.2370.1prot_L-elsbetiae_contig13.2370.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13 8845..10979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815480.0936308-CDS-L-elsbetiae_contig13:8844..88921622815480.0936308-CDS-L-elsbetiae_contig13:8844..8892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 8845..8892 +
1691682918.4404907-CDS-L-elsbetiae_contig13:8844..88921691682918.4404907-CDS-L-elsbetiae_contig13:8844..8892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 8845..8892 +
1622815480.1053424-CDS-L-elsbetiae_contig13:9154..92621622815480.1053424-CDS-L-elsbetiae_contig13:9154..9262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 9155..9262 +
1691682918.4510326-CDS-L-elsbetiae_contig13:9154..92621691682918.4510326-CDS-L-elsbetiae_contig13:9154..9262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 9155..9262 +
1622815480.1153994-CDS-L-elsbetiae_contig13:9509..96141622815480.1153994-CDS-L-elsbetiae_contig13:9509..9614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 9510..9614 +
1691682918.4607184-CDS-L-elsbetiae_contig13:9509..96141691682918.4607184-CDS-L-elsbetiae_contig13:9509..9614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 9510..9614 +
1622815480.1306171-CDS-L-elsbetiae_contig13:9874..100291622815480.1306171-CDS-L-elsbetiae_contig13:9874..10029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 9875..10029 +
1691682918.4704971-CDS-L-elsbetiae_contig13:9874..100291691682918.4704971-CDS-L-elsbetiae_contig13:9874..10029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 9875..10029 +
1622815480.1419156-CDS-L-elsbetiae_contig13:10474..106011622815480.1419156-CDS-L-elsbetiae_contig13:10474..10601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 10475..10601 +
1691682918.479333-CDS-L-elsbetiae_contig13:10474..106011691682918.479333-CDS-L-elsbetiae_contig13:10474..10601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 10475..10601 +
1622815480.1519551-CDS-L-elsbetiae_contig13:10874..109791622815480.1519551-CDS-L-elsbetiae_contig13:10874..10979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 10875..10979 +
1691682918.48816-CDS-L-elsbetiae_contig13:10874..109791691682918.48816-CDS-L-elsbetiae_contig13:10874..10979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 10875..10979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13.2370.1

>prot_L-elsbetiae_contig13.2370.1 ID=prot_L-elsbetiae_contig13.2370.1|Name=mRNA_L-elsbetiae_contig13.2370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
VDLVTGDDCVVSSDAKVPLVCVNDNYPPEFFNNDGSLNFPDFLPPRSDFI
IQAHYACARESTVFELGLLPAEVLATQGVGVLSCSLGRYAVDFAEIGTPC
FDQEFLDDTSGASDYTNRDACTDIDENRAPADSNEYISELASYLDLFNAQ
VAAHNACNGDHLCLVGVWITANIITDLLFPLVPPELEDFVDSMVVQHLDL
YDWGTSNPIYSRLESG
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mRNA from alignment at L-elsbetiae_contig13:8845..10981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13.2370.1 ID=mRNA_L-elsbetiae_contig13.2370.1|Name=mRNA_L-elsbetiae_contig13.2370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2137bp|location=Sequence derived from alignment at L-elsbetiae_contig13:8845..10981+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGATCTCGTCACTGGCGATGACTGCGTCGTCTCCTCCGACGCGAAGGT
GAAAGGCTGTGGTATGGTACCAGACGGAGCAGTTCATCGGTGCTGAAATA
TATCTCAAGCAGCCCGTCACCGGGATAATTCGTGTTGTGGACAAATCGAT
GTTTCGAATATCCTTCTGGCATTACATACCTATAGGCTGCTCGTAGAAGG
TTTTATTCCTTGTTTGCGTAATTCTCGCACGGCAGTAGTCGTATAAAAAC
ATTTCACCCATTTCGGTATTGTTTCTTCCGATCCACGCAACATGTCGGCG
CCCCGCCCAGGTACCGCTGGTTTGCGTGAACGACAACTACCCGCCGGAGT
TCTTCAACAACGACGGTAGCTTGAACTTCCCGGACTTTTTGCCCCCGAGG
AGCGACTTCATCATTCAGGCGAGAAACTGTTAGAAGTGGGCAGTTGTTCG
CCTTCGGAGAAATATTGGCGCACACCAAATACGCAAGCATCGTGGAGCAG
GCAAGGGACAGATTGACGGTGCTTTTGTTGCCACGGCCTGGTTGCGGTAT
CACCCACCAACACATGTGTGTGCACGATGTATTCCATTTTTATGCTCTTT
GGTGTCCCAGGCGAAATAACTAACCTTGTGCTATCCCTACCTGTTGTATC
TTTGTTTTTGCTCAGGCGCACTATGCATGTGCGAGGGAGAGCACCGTGTT
CGAGCTAGGACTCCTTCCTGCGGAGGTCTTGGCAACGCAGGGTGTCGGCG
TGCTCTCGTGCTCTCTCGGGGTGAGCGCAAACACGGAGGCCATATCGTGT
CTACCCATGGACCCAGTTCAGAGACACAGCTGAGCAGGAGTTTCACGTAT
CTAGCAGCAGCAATGTGGGCCTATCTATTTACTGTAAAAACATCTCAAGC
GAGGTTTATGCCTGTTGGGTTTCGCAAAGAGGATATCTCGGTGGAGTTGT
ACGGCCTAGTTTGCCAGCAGCAGTCCGTCAAACGCGTCGGTCCCTCTTCA
CGCTTCACGCCCGGTTGCTCTCGTTGACAGAGGTACGCGGTCGACTTCGC
CGAGATTGGAACGCCTTGCTTCGACCAGGAGTTCCTTGACGATACTTCGG
GGGCTAGCGACTACACCAACCGCGACGCCTGCACCGACATTGATGAGAAT
CGGGCACCGGCCGACAGCAACGAGTACATCAGCGAGTGAGTCGCCGACCG
TTGTTTTTGTCTCTTTATTCACGCATGGCAACATGGTCAATTGCAGCTCA
CATAAACCACGTCAGAACGGCAGCGAAGCAGACATTGTGCTCATTGGTAG
TGTAGGCTAATACGGAATGCACCTGCCGATGGACGCCAATCTTCTTTGCT
GAACCAAGAGCATCTTGCTGGCGTAGTGTGCCAGTCCGTGATCCATCCAC
CTCGGCACGGTGCGCCTCATACGTACACCGGCAAGACGGCAATGAGATCA
TTGGCGGGCACCGGGTAACCATTTGTATCATACACTTATGTATCAACAAT
ATAGAGAGCTAAAATGCAGCCCCCAACCATACCCCTCAACCACCTGCGCA
CAAATTGACTGCGGACGTGTTGCCTGTTTGGATCTCTTCTGTGTCCCGCG
CATCCACCCGCTCAACGCTACGCGAAACAGGCTGGCGTCTTACCTGGACC
TGTTCAACGCCCAAGTAGCCGCGCACAACGCGTGCAATGGCGACCACTTA
TGCCTCGTGGGCGTCTGGATCACTGCGAACATCATCACCGATCTGCTATT
CCCCCTGGTGAAGGCTGTTGAGTTGTCTTGCAGCGCCGTTGGTGTGCTAA
TGGTTGTCTTGGCTGCTGGTGAAATCTTCTTGCATCGCTCAGTACCCCCA
CAGCTACGCAGGCGACAGGCCTCGACTCGACGTTCATATCACTCAGGGCA
GACATTTTCCCTCTGGATATCGGCATGTTCAGCGTCGGTCGTCCTAGTCA
ATCAGTCATGTCCTCGTGCTAGCCGAATGAGCGGGCCCTCCTAACCTAAG
GATTTGTCTCTTGGCTGCCCGCAACCCAAGGTACCGCCCGAACTGGAGGA
TTTCGTGGACAGCATGGTCGTGCAGCATCTGGACCTGTACGATTGGGGAA
CCAGCAACCCGATTTACAGCCGCCTAGAATCAGGGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13:8845..10981+

>mRNA_L-elsbetiae_contig13.2370.1 ID=mRNA_L-elsbetiae_contig13.2370.1|Name=mRNA_L-elsbetiae_contig13.2370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig13:8845..10981+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGATCTCGTCACTGGCGATGACTGCGTCGTCTCCTCCGACGCGAAGGT
CGATCTCGTCACTGGCGATGACTGCGTCGTCTCCTCCGACGCGAAGGTAC
CGCTGGTTTGCGTGAACGACAACTACCCGCCGGAGTTCTTCAACAACGAC
GGTAGCTTGAACTTCCCGGACTTTTTGCCCCCGAGGAGCGACTTCATCAT
TCAGGTACCGCTGGTTTGCGTGAACGACAACTACCCGCCGGAGTTCTTCA
ACAACGACGGTAGCTTGAACTTCCCGGACTTTTTGCCCCCGAGGAGCGAC
TTCATCATTCAGGCGCACTATGCATGTGCGAGGGAGAGCACCGTGTTCGA
GCTAGGACTCCTTCCTGCGGAGGTCTTGGCAACGCAGGGTGTCGGCGTGC
TCTCGTGCTCTCTCGGGGCGCACTATGCATGTGCGAGGGAGAGCACCGTG
TTCGAGCTAGGACTCCTTCCTGCGGAGGTCTTGGCAACGCAGGGTGTCGG
CGTGCTCTCGTGCTCTCTCGGGAGGTACGCGGTCGACTTCGCCGAGATTG
GAACGCCTTGCTTCGACCAGGAGTTCCTTGACGATACTTCGGGGGCTAGC
GACTACACCAACCGCGACGCCTGCACCGACATTGATGAGAATCGGGCACC
GGCCGACAGCAACGAGTACATCAGCGAAGGTACGCGGTCGACTTCGCCGA
GATTGGAACGCCTTGCTTCGACCAGGAGTTCCTTGACGATACTTCGGGGG
CTAGCGACTACACCAACCGCGACGCCTGCACCGACATTGATGAGAATCGG
GCACCGGCCGACAGCAACGAGTACATCAGCGAGCTGGCGTCTTACCTGGA
CCTGTTCAACGCCCAAGTAGCCGCGCACAACGCGTGCAATGGCGACCACT
TATGCCTCGTGGGCGTCTGGATCACTGCGAACATCATCACCGATCTGCTA
TTCCCCCTGGCTGGCGTCTTACCTGGACCTGTTCAACGCCCAAGTAGCCG
CGCACAACGCGTGCAATGGCGACCACTTATGCCTCGTGGGCGTCTGGATC
ACTGCGAACATCATCACCGATCTGCTATTCCCCCTGGTACCGCCCGAACT
GGAGGATTTCGTGGACAGCATGGTCGTGCAGCATCTGGACCTGTACGATT
GGGGAACCAGCAACCCGATTTACAGCCGCCTAGAATCAGGGGTACCGCCC
GAACTGGAGGATTTCGTGGACAGCATGGTCGTGCAGCATCTGGACCTGTA
CGATTGGGGAACCAGCAACCCGATTTACAGCCGCCTAGAATCAGGG
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