mRNA_L-elsbetiae_contig13.2369.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13.2369.1
Unique NamemRNA_L-elsbetiae_contig13.2369.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13.2369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13contigL-elsbetiae_contig13:5702..7919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size460
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13.2369.1prot_L-elsbetiae_contig13.2369.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13 5702..7919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.9650488-CDS-L-elsbetiae_contig13:5701..57511622815479.9650488-CDS-L-elsbetiae_contig13:5701..5751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 5702..5751 +
1691682918.3783581-CDS-L-elsbetiae_contig13:5701..57511691682918.3783581-CDS-L-elsbetiae_contig13:5701..5751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 5702..5751 +
1622815480.0157843-CDS-L-elsbetiae_contig13:6098..62061622815480.0157843-CDS-L-elsbetiae_contig13:6098..6206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 6099..6206 +
1691682918.3968048-CDS-L-elsbetiae_contig13:6098..62061691682918.3968048-CDS-L-elsbetiae_contig13:6098..6206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 6099..6206 +
1622815480.0293179-CDS-L-elsbetiae_contig13:6547..66061622815480.0293179-CDS-L-elsbetiae_contig13:6547..6606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 6548..6606 +
1691682918.4069026-CDS-L-elsbetiae_contig13:6547..66061691682918.4069026-CDS-L-elsbetiae_contig13:6547..6606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 6548..6606 +
1622815480.0391638-CDS-L-elsbetiae_contig13:7030..71581622815480.0391638-CDS-L-elsbetiae_contig13:7030..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 7031..7158 +
1691682918.414883-CDS-L-elsbetiae_contig13:7030..71581691682918.414883-CDS-L-elsbetiae_contig13:7030..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 7031..7158 +
1622815480.0497096-CDS-L-elsbetiae_contig13:7418..74791622815480.0497096-CDS-L-elsbetiae_contig13:7418..7479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 7419..7479 +
1691682918.4227922-CDS-L-elsbetiae_contig13:7418..74791691682918.4227922-CDS-L-elsbetiae_contig13:7418..7479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 7419..7479 +
1622815480.0599496-CDS-L-elsbetiae_contig13:7866..79191622815480.0599496-CDS-L-elsbetiae_contig13:7866..7919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 7867..7919 +
1691682918.4309976-CDS-L-elsbetiae_contig13:7866..79191691682918.4309976-CDS-L-elsbetiae_contig13:7866..7919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 7867..7919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13.2369.1

>prot_L-elsbetiae_contig13.2369.1 ID=prot_L-elsbetiae_contig13.2369.1|Name=mRNA_L-elsbetiae_contig13.2369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MNVFLALFEVLDEAFRAFGNLWVDVARVLEGFHDALESLFDALDPFISLF
DVLFKIADIFQSLTCPSFLGFICFIEDLIAAAIDVIFSPLEAIFAPLIDP
LVDLIGLPEIGFSISDILPAGILPGTGPIGEIRAAALTLVQDVVEVFIDD
PLP
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mRNA from alignment at L-elsbetiae_contig13:5702..7919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13.2369.1 ID=mRNA_L-elsbetiae_contig13.2369.1|Name=mRNA_L-elsbetiae_contig13.2369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2218bp|location=Sequence derived from alignment at L-elsbetiae_contig13:5702..7919+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTCTTCCTTGCTCTTTTCGAGGTCCTCGACGAAGCTTTCAGGGC
GTGAGTACGAAAATCCCGTTCGGTGATCGGGGCCGGTGCATGCTTTTCTC
TACTGATCGGTCGATGTTAATCTAGAGCACGACGTTGAAACTCGGCTGTT
TGAGGTTCCTGTACCAGAAGTGCAGCCGTAACTCCTGATGTACAGACTAT
GCTTGCACAGGCCTCTGATTTGTAATTCGCTCTGCATGAGCAGTAGTTTG
AATCGTTTTGTGAGTCCTGGCATCGTTTTGCTCTCCCGGCTTCTCTCCCG
GTGTGACGTGTGGCAATCCTTTCCGATAGAGAAACACATATGTAGAGTGG
TTGCGTTGAGCATCTATTTTCTAATCACGCGCATGCACGTATGGCAGGTT
CGGCAATCTCTGGGTGGATGTGGCCAGGGTGTTGGAGGGCTTCCATGACG
CCCTCGAAAGCCTGTTCGATGCGCTCGATCCTTTCATTTCGCTCTTCGAC
GTGCTGTGAGTTTTAGGTTTTCGGGCGTTTCTCGGCGGAAATTGGCATCA
GCTTATGCAGTTAGTTAAGGGCTCGCAAGTTTGAAGCGGACATATGACAA
TCGCATTCCTAGAACCTTGCTCCAGTATTCGCCGCATGCATCTGGCTCGT
CTCTATTTATGTACCGGTAGTCGCATATGTATAGAGCAAACCTTCATCTT
ATTTTGCAGAAGTGTTGCACATTCAACCCCCAAATACTACCAAGCCTTTC
GAAGCGTTGAGCCAGAAGGAATTCGGTAAACCTCGCCGCCAATCTCCATC
CTTTTTCGCCTTGTTCCCACCAATACCCACCCTCCTCCCGCCACAGGTTC
AAGATTGCAGACATTTTCCAGTCCCTAACGTGCCCGTCGTTCCTCGGGTT
TATCTGTGAGTGATAAGTGGTACAACAATGTTGTTTGACGAACGCCACTG
AAGCCGAAGGGCTGACGACCCGCGTACTTGAGCTCCTCTCGACGTGTAGT
CTCGACCGAATCTGTGCTTTGCCGAGCGGTCAGCCAACCAGCCCAAATTT
TGCAGATCTTACTATTTTCTCCGTGAGAAGACTGATACCAGTGCATAGCC
ACTCCCACTGGCATGCTCCTCGTAGAACCGAAACCATACCGAACGAGGCA
CGGCCTTGCCTGCATGACGAAAACATACCGTGTTCTACTCGCTGCTGTTT
GGGTTCTTCCGGTTGTGTTGCTTACCGTGGGCGGACGTTCCACCGTCGGA
AGGCTTTCGCTAAAACCACAAGGTGTTCAACAAGCGTCGATGCCGAACCT
CCTGCGCGGCGTACCTCTCTCTGGCACAGGTTTCATCGAAGACCTCATCG
CTGCGGCAATCGACGTGATATTCTCTCCCCTTGAGGCCATCTTCGCGCCT
CTGATCGACCCGCTCGTTGATCTGATCGGTCTTCCCGAAATCGGCTTCAG
CATCTCGGTAAGTTTCGAAGACAGCATACCGGGGAACGTGGCTTCGTGTG
TGCGTGTGTATGCTCTCTGTCATGCCATGCCATGCCGGCGGCTCGATGGC
CGCGGGCTGACGTATGCCCCGGGCTGTCGCCATGCAGTATTCACCAGCTT
GACCACCGCAGGGGTAGACAATGAAGCACGACGAAGTTTTGCCTGAGTCT
TGTGTTTGAGGATGTATGCACAAATACGCTCTAATGTACGCCAAATGTGT
TTAAATTGTCTCAACAGGATATACTGCCGGCTGGCATTCTCCCGGGGACC
GGGCCTATCGGGGAAATTCGTGCTGCAGGTGAGTTTCCCGTATGCTTGGC
GTTGTTTTATCGTCCAGCCTGGTTCTGCCTCGAAAAAACACAGATATGAG
TGTCCCCGCAGTCCTATGTTTGGCCATGCCGCTTTTCGGGTTCTGTGCAG
TCGGCGGACATACCCGGGGAGCCACATCGGAAGCCATGGTTGTACGTAGC
TTGTGGGTGTAAAGTCCCATCCATGTTGCCATATCTCTCTGCTTCTCTGT
CACGGTTGCAACGAGTCGTCGCTTTGTTCGAGGCCTAGTATAGTGTACGT
CCCCGCGTTGACCAGCCCTTACAGTTTCGATCCCCCCGCCCCTGCCCCCT
GACCCCTGACCCACCGTCTCCACACACCCGCCTTCATTGTCTGTGGGGAA
TGCATATCTACTCAGCCCTGACGCTAGTGCAGGACGTGGTCGAGGTGTTC
ATCGACGACCCCCTCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13:5702..7919+

>mRNA_L-elsbetiae_contig13.2369.1 ID=mRNA_L-elsbetiae_contig13.2369.1|Name=mRNA_L-elsbetiae_contig13.2369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig13:5702..7919+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTCTTCCTTGCTCTTTTCGAGGTCCTCGACGAAGCTTTCAGGGC
ATGAACGTCTTCCTTGCTCTTTTCGAGGTCCTCGACGAAGCTTTCAGGGC
GTTCGGCAATCTCTGGGTGGATGTGGCCAGGGTGTTGGAGGGCTTCCATG
ACGCCCTCGAAAGCCTGTTCGATGCGCTCGATCCTTTCATTTCGCTCTTC
GACGTGCTGTTCGGCAATCTCTGGGTGGATGTGGCCAGGGTGTTGGAGGG
CTTCCATGACGCCCTCGAAAGCCTGTTCGATGCGCTCGATCCTTTCATTT
CGCTCTTCGACGTGCTGTTCAAGATTGCAGACATTTTCCAGTCCCTAACG
TGCCCGTCGTTCCTCGGGTTTATCTGTTCAAGATTGCAGACATTTTCCAG
TCCCTAACGTGCCCGTCGTTCCTCGGGTTTATCTGTTTCATCGAAGACCT
CATCGCTGCGGCAATCGACGTGATATTCTCTCCCCTTGAGGCCATCTTCG
CGCCTCTGATCGACCCGCTCGTTGATCTGATCGGTCTTCCCGAAATCGGC
TTCAGCATCTCGGTTTCATCGAAGACCTCATCGCTGCGGCAATCGACGTG
ATATTCTCTCCCCTTGAGGCCATCTTCGCGCCTCTGATCGACCCGCTCGT
TGATCTGATCGGTCTTCCCGAAATCGGCTTCAGCATCTCGGATATACTGC
CGGCTGGCATTCTCCCGGGGACCGGGCCTATCGGGGAAATTCGTGCTGCA
GGATATACTGCCGGCTGGCATTCTCCCGGGGACCGGGCCTATCGGGGAAA
TTCGTGCTGCAGCCCTGACGCTAGTGCAGGACGTGGTCGAGGTGTTCATC
GACGACCCCCTCCCGCCCTGACGCTAGTGCAGGACGTGGTCGAGGTGTTC
ATCGACGACCCCCTCCCG
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