mRNA_L-elsbetiae_contig12995.2364.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12995.2364.1
Unique NamemRNA_L-elsbetiae_contig12995.2364.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12995.2364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12995contigL-elsbetiae_contig12995:2138..2667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.5013585-CDS-L-elsbetiae_contig12995:2137..26651622815479.5013585-CDS-L-elsbetiae_contig12995:2137..2665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12995 2138..2665 +
1691682918.1618028-CDS-L-elsbetiae_contig12995:2137..26651691682918.1618028-CDS-L-elsbetiae_contig12995:2137..2665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12995 2138..2665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12995.2364.1prot_L-elsbetiae_contig12995.2364.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12995 2138..2665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12995.2364.1

>prot_L-elsbetiae_contig12995.2364.1 ID=prot_L-elsbetiae_contig12995.2364.1|Name=mRNA_L-elsbetiae_contig12995.2364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
SCVRWRTRKGEWEWTTRKVARTWRIHKAASECSERLFDTPPAFLSGIDTL
DKAGQVQSGSAEAPRGKRPRLVLPSSTTTTPSAAGRPLHDDKNDSAAAGI
EDSGSCYPVSVNKSPRARHVYPPTGLGSPASTVLSTTSGSPPGDNISSGR
EATKESGSSLPVSVNKSPTTTNVRQP
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mRNA from alignment at L-elsbetiae_contig12995:2138..2667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12995.2364.1 ID=mRNA_L-elsbetiae_contig12995.2364.1|Name=mRNA_L-elsbetiae_contig12995.2364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=530bp|location=Sequence derived from alignment at L-elsbetiae_contig12995:2138..2667+ (Laminarionema elsbetiae ELsaHSoW15)
TCTTGCGTGCGATGGCGGACGAGAAAGGGCGAGTGGGAGTGGACGACCCG
GAAGGTGGCGCGGACCTGGCGGATACACAAAGCAGCGAGTGAGTGCAGCG
AAAGGCTTTTTGATACCCCGCCAGCCTTCCTGTCTGGGATAGACACCTTG
GACAAGGCCGGCCAGGTTCAGTCCGGCTCGGCCGAGGCTCCCCGTGGGAA
AAGACCTAGGCTCGTTTTGCCTTCCTCCACCACTACCACACCCTCCGCAG
CGGGGCGTCCTCTGCATGATGACAAGAACGACTCCGCCGCAGCAGGCATA
GAAGATTCTGGCTCGTGTTATCCTGTGTCCGTCAACAAGTCCCCTAGGGC
GAGGCACGTCTACCCTCCCACGGGTCTCGGTTCGCCGGCCTCCACCGTAC
TCTCCACGACCTCAGGGTCTCCGCCTGGCGACAACATCAGTTCCGGAAGA
GAGGCCACCAAAGAATCTGGCTCGTCCCTCCCCGTGTCAGTCAACAAGTC
GCCGACGACCACCAACGTGCGCCAGCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12995:2138..2667+

>mRNA_L-elsbetiae_contig12995.2364.1 ID=mRNA_L-elsbetiae_contig12995.2364.1|Name=mRNA_L-elsbetiae_contig12995.2364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig12995:2138..2667+ (Laminarionema elsbetiae ELsaHSoW15)
TCTTGCGTGCGATGGCGGACGAGAAAGGGCGAGTGGGAGTGGACGACCCG
GAAGGTGGCGCGGACCTGGCGGATACACAAAGCAGCGAGTGAGTGCAGCG
AAAGGCTTTTTGATACCCCGCCAGCCTTCCTGTCTGGGATAGACACCTTG
GACAAGGCCGGCCAGGTTCAGTCCGGCTCGGCCGAGGCTCCCCGTGGGAA
AAGACCTAGGCTCGTTTTGCCTTCCTCCACCACTACCACACCCTCCGCAG
CGGGGCGTCCTCTGCATGATGACAAGAACGACTCCGCCGCAGCAGGCATA
GAAGATTCTGGCTCGTGTTATCCTGTGTCCGTCAACAAGTCCCCTAGGGC
GAGGCACGTCTACCCTCCCACGGGTCTCGGTTCGCCGGCCTCCACCGTAC
TCTCCACGACCTCAGGGTCTCCGCCTGGCGACAACATCAGTTCCGGAAGA
GAGGCCACCAAAGAATCTGGCTCGTCCCTCCCCGTGTCAGTCAACAAGTC
GCCGACGACCACCAACGTGCGCCAGCCCTCTTGCGTGCGATGGCGGACGA
GAAAGGGCGAGTGGGAGTGGACGACCCGGAAGGTGGCGCGGACCTGGCGG
ATACACAAAGCAGCGAGTGAGTGCAGCGAAAGGCTTTTTGATACCCCGCC
AGCCTTCCTGTCTGGGATAGACACCTTGGACAAGGCCGGCCAGGTTCAGT
CCGGCTCGGCCGAGGCTCCCCGTGGGAAAAGACCTAGGCTCGTTTTGCCT
TCCTCCACCACTACCACACCCTCCGCAGCGGGGCGTCCTCTGCATGATGA
CAAGAACGACTCCGCCGCAGCAGGCATAGAAGATTCTGGCTCGTGTTATC
CTGTGTCCGTCAACAAGTCCCCTAGGGCGAGGCACGTCTACCCTCCCACG
GGTCTCGGTTCGCCGGCCTCCACCGTACTCTCCACGACCTCAGGGTCTCC
GCCTGGCGACAACATCAGTTCCGGAAGAGAGGCCACCAAAGAATCTGGCT
CGTCCCTCCCCGTGTCAGTCAACAAGTCGCCGACGACCACCAACGTGCGC
CAGCCC
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