mRNA_L-elsbetiae_contig12990.2362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12990.2362.1
Unique NamemRNA_L-elsbetiae_contig12990.2362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12990.2362.1 vs. uniprot
Match: D8LG52_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG52_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.890e-28
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    4 QAVEVRPANGKSGPVSRSGPKKLEDLEAEGKLAMDRLEDIANYMGDYRDIVDEHAEIQRAQKRLESALP 210
            +AVEVR  NGKSGPVS+SGPKKLEDLEAEGKLAMDRLEDIANYMGDYRDIVDE+A++ R  KRLE A P
Sbjct:  293 KAVEVRAPNGKSGPVSKSGPKKLEDLEAEGKLAMDRLEDIANYMGDYRDIVDEYADLHRVHKRLEGATP 361
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12990.2362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG52_ECTSI1.890e-2882.61Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12990contigL-elsbetiae_contig12990:501..1514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue5.3e-24
Seed eggNOG ortholog2880.D8LG52
Preferred nameFAP73
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032838,GO:0034622,GO:0035082,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0044877,GO:0048870,GO:0050790,GO:0051179,GO:0051336,GO:0051674,GO:0060271,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070840,GO:0070925,GO:0071840,GO:0097014,GO:0097545,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:2000574
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs28JKH@1,2QRZS@2759
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-11_001920.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size257
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.3534994-CDS-L-elsbetiae_contig12990:500..5871622815479.3534994-CDS-L-elsbetiae_contig12990:500..587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12990 501..587 -
1691682918.0909002-CDS-L-elsbetiae_contig12990:500..5871691682918.0909002-CDS-L-elsbetiae_contig12990:500..587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12990 501..587 -
1622815479.3677711-CDS-L-elsbetiae_contig12990:1346..15141622815479.3677711-CDS-L-elsbetiae_contig12990:1346..1514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12990 1347..1514 -
1691682918.1028786-CDS-L-elsbetiae_contig12990:1346..15141691682918.1028786-CDS-L-elsbetiae_contig12990:1346..1514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12990 1347..1514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12990.2362.1prot_L-elsbetiae_contig12990.2362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12990 501..1514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12990.2362.1

>prot_L-elsbetiae_contig12990.2362.1 ID=prot_L-elsbetiae_contig12990.2362.1|Name=mRNA_L-elsbetiae_contig12990.2362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MQAVEVRPANGKSGPVSRSGPKKLEDLEAEGKLAMDRLEDIANYMGDYRD
IVDEHAEIQRAQKRLESALPPTTTTTTTAVAAAPP
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mRNA from alignment at L-elsbetiae_contig12990:501..1514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12990.2362.1 ID=mRNA_L-elsbetiae_contig12990.2362.1|Name=mRNA_L-elsbetiae_contig12990.2362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig12990:501..1514- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCTGTAGAGGTGCGGCCTGCAAACGGCAAGTCCGGACCCGTGAG
CAGATCGGGCCCGAAAAAGCTGGAGGATCTCGAGGCTGAGGGGAAGCTGG
CCATGGACCGCTTGGAAGATATCGCCAATTACATGGGCGACTACAGGGAT
ATTGTGGACGAGCACGCGGTGAGTTGTTGTTGTTGTTGTCACCGTTCCGA
TCTCTCTTTCCGGTACCTCTATCTCTCCGTACTAATCCAAACACTTGACG
CGGTCGATTCCCGTGGTCACAGTAGGCTAACTTACCCTTAGAATCGTCTA
GACAATACTTCTTGGTCTGCTGAAAAATATTAGAAAAATAAAAGTGGACG
CAAAAAACAACATACGTATCAGACACGAGATAGTCCGCCGGAAGTCCCCC
ACTCTCCTCTACGCGCTGCTGTGTGAGGTAACAAAACTGGGAAAACCTTA
GTCTATTGTAGGGAAATAAAAGTATGGAACGCTTTTCCTGACTATCTAGA
CTAATTGTTTTCAAGGCGCTTGCTCTATAATCGCTTGTTTCACCCTTCAA
CTCTCCTCCTCCTCTCGCACGCGCTAGCCACTCGCCGGCTTCAAATAGAT
AAGTTTTTCTTCCACGAAGGCTCCTCCCGCTCCACATCATAATACAAAAG
CGCACGCGGATTCGTGCACCATTCTTGTATGTTGTGGTAAGCGTACATGC
TACTCTGTGGGCTTGCATTAGTTGCAGATGAAACGTTGTGGTGGGCTTAC
TTTGCTGGAGTTCTCACGATAGCTAGACTAGTGCATTTCGACAAAAGCTC
CTTACGTTTTTTACAGGAGGTCTGCCGGGGGGGTCAACAATATATCTAGA
CTACTTCCATGTTGTGAGAACTTACTGTACGTGATTTCGATTCACTACTC
TGTTGTTGTGTTTCCCTGGTGGCGCAGGAGATCCAAAGGGCGCAAAAAAG
GCTGGAGAGCGCGCTCCCCCCGACCACAACAACAACAACAACAGCAGTAG
CGGCAGCACCACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12990:501..1514-

>mRNA_L-elsbetiae_contig12990.2362.1 ID=mRNA_L-elsbetiae_contig12990.2362.1|Name=mRNA_L-elsbetiae_contig12990.2362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig12990:501..1514- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCTGTAGAGGTGCGGCCTGCAAACGGCAAGTCCGGACCCGTGAG
CAGATCGGGCCCGAAAAAGCTGGAGGATCTCGAGGCTGAGGGGAAGCTGG
CCATGGACCGCTTGGAAGATATCGCCAATTACATGGGCGACTACAGGGAT
ATTGTGGACGAGCACGCGATGCAGGCTGTAGAGGTGCGGCCTGCAAACGG
CAAGTCCGGACCCGTGAGCAGATCGGGCCCGAAAAAGCTGGAGGATCTCG
AGGCTGAGGGGAAGCTGGCCATGGACCGCTTGGAAGATATCGCCAATTAC
ATGGGCGACTACAGGGATATTGTGGACGAGCACGCGGAGATCCAAAGGGC
GCAAAAAAGGCTGGAGAGCGCGCTCCCCCCGACCACAACAACAACAACAA
CAGCAGTAGCGGCAGCACCACCGGAGATCCAAAGGGCGCAAAAAAGGCTG
GAGAGCGCGCTCCCCCCGACCACAACAACAACAACAACAGCAGTAGCGGC
AGCACCACCG
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