mRNA_L-elsbetiae_contig12986.2359.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12986.2359.1
Unique NamemRNA_L-elsbetiae_contig12986.2359.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A0J8BG93_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BG93_BETVV)

HSP 1 Score: 136 bits (342), Expect = 2.570e-39
Identity = 68/92 (73.91%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   43 RIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            RIFT   ISLS CWRQRGSRY I AGRNLPDKEFRYLRTVIVTAAVYRG  S+      T+RHRAGV PYTSS + AE CVF KQ PPP LC
Sbjct:    3 RIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSVLAPLLLTFRHRAGVRPYTSSYDFAEPCVFVKQLPPPGLC 94          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A381WHK7_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381WHK7_9ZZZZ)

HSP 1 Score: 126 bits (317), Expect = 2.880e-35
Identity = 70/106 (66.04%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 SKGARGLSVQLRDGRIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            SK  RGL V LR  RIFT   IS SP  RQ  SRY I AGRNLPDK  RYLRTVIVTAAV+RG +      S TYRH AGVSPYTS   LA TCVF+KQS  PILC
Sbjct:   25 SKAPRGLFVLLRVTRIFTGPAISPSPSLRQCSSRYAIRAGRNLPDKGLRYLRTVIVTAAVHRGFSRKLSPPSLTYRHWAGVSPYTSPFGLARTCVFDKQSLKPILC 130          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A8D8MY37_CULPI (Uncharacterized protein ORF91 n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8MY37_CULPI)

HSP 1 Score: 127 bits (319), Expect = 7.560e-35
Identity = 69/106 (65.09%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 SKGARGLSVQLRDGRIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            SKG+RGLSV  R   IFT   ISLS  WRQ G  Y I AGRNLPDKEFRYLRTVIVTAAVY G  S       T++HRAGV PYTS+   AE+CVF+KQS  PILC
Sbjct:   86 SKGSRGLSVLPRVHCIFTASSISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFNSELAPLLLTFQHRAGVRPYTSTYVFAESCVFSKQSLLPILC 191          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A1V5J5Q1_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium ADurb.BinA012 TaxID=1852815 RepID=A0A1V5J5Q1_9BACT)

HSP 1 Score: 125 bits (315), Expect = 1.070e-34
Identity = 71/109 (65.14%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    1 SKGARGLSVQLRDGRIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTS---MRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            S+  RGLSVQ R   IFT+  IS S   RQ  SRY I AG+NLPDKEFRYLRTVIVTAAVY GL+S   +R     T++HRAGVSPYTSS +LAETCVF KQS  P LC
Sbjct:    5 SEALRGLSVQSRVTSIFTSATISPSALSRQCPSRYAIRAGQNLPDKEFRYLRTVIVTAAVYWGLSSKLRLRLPFPLTFQHRAGVSPYTSSFDLAETCVFAKQSLGPFLC 113          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A6A5LBS9_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LBS9_LUPAL)

HSP 1 Score: 131 bits (330), Expect = 1.420e-34
Identity = 66/92 (71.74%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   43 RIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            RIFT   ISLS CWRQRGSRY I AGRNLPDKEFRYLRTVIVTAAVY G +S       T++HRAGV PYTS C  AE CVF+KQS PP LC
Sbjct:  298 RIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFSSELAPLPLTFQHRAGVRPYTSYCYFAEPCVFDKQSLPPGLC 389          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 134 bits (338), Expect = 1.910e-34
Identity = 67/92 (72.83%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   43 RIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            RIFT   ISLS CWRQRGSRY I AGRNLPDKEFRYLRTVIVTAAVY G  S       T++HRAGV PYTSSC+ AE CVF+KQS PP LC
Sbjct:  416 RIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFDSKLAPLLLTFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLC 507          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A0N9HQQ1_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5E7 TaxID=1701324 RepID=A0A0N9HQQ1_9BACT)

HSP 1 Score: 125 bits (315), Expect = 1.060e-33
Identity = 69/107 (64.49%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 SKGARGLSVQLRDGRIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMR-KHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            SK  RGL V  R  RIFT   IS  P  RQR +RY+  AGRNLPDKEFRYLRTVIVTAAVY G +S R K    T++H AGVSPYTS+C LAETCVF KQS  P+ C
Sbjct:    5 SKAPRGLFVLSRVTRIFTRISISPGPPLRQRPTRYSFRAGRNLPDKEFRYLRTVIVTAAVYWGFSSQRLKPLPLTFQHWAGVSPYTSACALAETCVFVKQSVGPVHC 111          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A6G0W3P6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W3P6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.620e-33
Identity = 61/82 (74.39%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   43 RIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVF 288
            RIFT    SLS CWRQRG RYTIHAGRNLPDKEFRYLRTV VTAAVY    SMRKH    ++HRAGV PYTSSC+LAE+CV 
Sbjct:  188 RIFTDNSNSLSLCWRQRGCRYTIHAGRNLPDKEFRYLRTVRVTAAVYWDFYSMRKHFLLIFQHRAGVRPYTSSCDLAESCVL 269          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A0F9CWB7_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9CWB7_9ZZZZ)

HSP 1 Score: 121 bits (304), Expect = 6.630e-32
Identity = 66/106 (62.26%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 SKGARGLSVQLRDGRIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            SK  RGL V LR   IFT   +S  P  RQR  RYT  AGRNLPDKEFRYLRTVIVTAAV RG +S       T+RH AGVS YTSS + A+TCVF KQS  P LC
Sbjct:   70 SKAPRGLFVLLRVRSIFTPISVSPGPSLRQRPIRYTFRAGRNLPDKEFRYLRTVIVTAAVPRGFSSELSPLPLTFRHWAGVSLYTSSLDFAQTCVFGKQSTGPFLC 175          
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Match: A0A0P6BEK3_9CRUS (Uncharacterized protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6BEK3_9CRUS)

HSP 1 Score: 117 bits (294), Expect = 8.960e-32
Identity = 65/106 (61.32%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 SKGARGLSVQLRDGRIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRYLRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILC 318
            SK  RGLSV  R   IFT   IS     R    RY   AGRNLPDKEFRYLRTV VTAAVY G  S R+   FT++HRAGVSPYTS    AETCVF KQSP P+ C
Sbjct:   11 SKAPRGLSVLPRVVCIFTDIAISPGRLLRHCPDRYAFRAGRNLPDKEFRYLRTVTVTAAVYWGFGSERQLFPFTFQHRAGVSPYTSPFGFAETCVFGKQSPGPLHC 116          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12986.2359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J8BG93_BETVV2.570e-3973.91Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
A0A381WHK7_9ZZZZ2.880e-3566.04Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A8D8MY37_CULPI7.560e-3565.09Uncharacterized protein ORF91 n=1 Tax=Culex pipien... [more]
A0A1V5J5Q1_9BACT1.070e-3465.14Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A6A5LBS9_LUPAL1.420e-3471.74Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L965_LUPAL1.910e-3472.83Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A0N9HQQ1_9BACT1.060e-3364.49Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A6G0W3P6_9STRA7.620e-3374.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0F9CWB7_9ZZZZ6.630e-3262.26Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A0P6BEK3_9CRUS8.960e-3261.32Uncharacterized protein n=1 Tax=Daphnia magna TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12986contigL-elsbetiae_contig12986:3708..4034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score118.6
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog123214.PERMA_1142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG NOG15344 non supervised orthologous group
EggNOG OGs2B9ZZ@1,323DM@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.755546-CDS-L-elsbetiae_contig12986:3707..40341622815478.755546-CDS-L-elsbetiae_contig12986:3707..4034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12986 3708..4034 -
1691682917.736597-CDS-L-elsbetiae_contig12986:3707..40341691682917.736597-CDS-L-elsbetiae_contig12986:3707..4034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12986 3708..4034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12986.2359.1prot_L-elsbetiae_contig12986.2359.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12986 3708..4034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12986.2359.1

>prot_L-elsbetiae_contig12986.2359.1 ID=prot_L-elsbetiae_contig12986.2359.1|Name=mRNA_L-elsbetiae_contig12986.2359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
SKGARGLSVQLRDGRIFTTYVISLSPCWRQRGSRYTIHAGRNLPDKEFRY
LRTVIVTAAVYRGLTSMRKHQSFTYRHRAGVSPYTSSCELAETCVFNKQS
PPPILCQR*
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mRNA from alignment at L-elsbetiae_contig12986:3708..4034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12986.2359.1 ID=mRNA_L-elsbetiae_contig12986.2359.1|Name=mRNA_L-elsbetiae_contig12986.2359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=327bp|location=Sequence derived from alignment at L-elsbetiae_contig12986:3708..4034- (Laminarionema elsbetiae ELsaHSoW15)
AGTAAAGGTGCACGGGGTCTTTCCGTCCAGCTGCGGGATGGTCGCATCTT CACGACCTATGTAATTTCACTGAGTCCCTGTTGGAGACAGCGGGGAAGTC GTTACACCATTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTAC CTTAGGACCGTCATAGTTACAGCCGCCGTTTACCGGGGTTTGACCTCGAT GCGTAAACATCAAAGCTTTACCTACCGGCACCGGGCAGGTGTCAGTCCCT ATACATCCTCTTGCGAGTTAGCAGAGACCTGTGTTTTTAATAAACAGTCG CCACCCCCGATTTTGTGCCAAAGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12986:3708..4034-

>mRNA_L-elsbetiae_contig12986.2359.1 ID=mRNA_L-elsbetiae_contig12986.2359.1|Name=mRNA_L-elsbetiae_contig12986.2359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig12986:3708..4034- (Laminarionema elsbetiae ELsaHSoW15)
AGTAAAGGTGCACGGGGTCTTTCCGTCCAGCTGCGGGATGGTCGCATCTT
CACGACCTATGTAATTTCACTGAGTCCCTGTTGGAGACAGCGGGGAAGTC
GTTACACCATTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTAC
CTTAGGACCGTCATAGTTACAGCCGCCGTTTACCGGGGTTTGACCTCGAT
GCGTAAACATCAAAGCTTTACCTACCGGCACCGGGCAGGTGTCAGTCCCT
ATACATCCTCTTGCGAGTTAGCAGAGACCTGTGTTTTTAATAAACAGTCG
CCACCCCCGATTTTGTGCCAAAGATAAAGTAAAGGTGCACGGGGTCTTTC
CGTCCAGCTGCGGGATGGTCGCATCTTCACGACCTATGTAATTTCACTGA
GTCCCTGTTGGAGACAGCGGGGAAGTCGTTACACCATTCATGCGGGTCGG
AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACAGC
CGCCGTTTACCGGGGTTTGACCTCGATGCGTAAACATCAAAGCTTTACCT
ACCGGCACCGGGCAGGTGTCAGTCCCTATACATCCTCTTGCGAGTTAGCA
GAGACCTGTGTTTTTAATAAACAGTCGCCACCCCCGATTTTGTGCCAAAG
ATAA
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