mRNA_L-elsbetiae_contig12985.2357.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12985.2357.1
Unique NamemRNA_L-elsbetiae_contig12985.2357.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12985.2357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12985contigL-elsbetiae_contig12985:1584..2126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12985.2357.1prot_L-elsbetiae_contig12985.2357.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12985 1702..2046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.5414007-UTR-L-elsbetiae_contig12985:1583..17011622815478.5414007-UTR-L-elsbetiae_contig12985:1583..1701Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12985 1584..1701 +
1691682917.682802-UTR-L-elsbetiae_contig12985:1583..17011691682917.682802-UTR-L-elsbetiae_contig12985:1583..1701Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12985 1584..1701 +
1622815478.5685406-UTR-L-elsbetiae_contig12985:2046..21261622815478.5685406-UTR-L-elsbetiae_contig12985:2046..2126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12985 2047..2126 +
1691682917.711823-UTR-L-elsbetiae_contig12985:2046..21261691682917.711823-UTR-L-elsbetiae_contig12985:2046..2126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12985 2047..2126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.55485-CDS-L-elsbetiae_contig12985:1701..20461622815478.55485-CDS-L-elsbetiae_contig12985:1701..2046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12985 1702..2046 +
1691682917.6969438-CDS-L-elsbetiae_contig12985:1701..20461691682917.6969438-CDS-L-elsbetiae_contig12985:1701..2046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12985 1702..2046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12985.2357.1

>prot_L-elsbetiae_contig12985.2357.1 ID=prot_L-elsbetiae_contig12985.2357.1|Name=mRNA_L-elsbetiae_contig12985.2357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MAGLSSAVRSMAVPRIMTGLLSVVRNMVVLPSAGSGTTCSTKYGGKPLAG
IQFGGHVSVIFSFSFSSGIRRQLRNIHFCGVRTNCKPLPDDVNIKHKEPH
KTKTKKTKGNAKRN*
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mRNA from alignment at L-elsbetiae_contig12985:1584..2126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12985.2357.1 ID=mRNA_L-elsbetiae_contig12985.2357.1|Name=mRNA_L-elsbetiae_contig12985.2357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=543bp|location=Sequence derived from alignment at L-elsbetiae_contig12985:1584..2126+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTGGCCGTGCGCTCGCTCGATGTCCCACACCTTGCGAGGTCCGCAATG
TGTGGCAAGGAAGAAAAATAACACCAATATGGCGGTACCGCCTTCGGCAG
TGCCCAGTGCCGCGAATAATGGCGGGACTTTCGTCGGCGGTTCGCAGTAT
GGCGGTACCGCGAATAATGACGGGGCTTCTGTCGGTAGTTCGCAATATGG
TGGTACTGCCTTCGGCGGGAAGCGGTACTACTTGTAGTACCAAATATGGC
GGTAAACCTCTGGCGGGAATACAATTCGGTGGTCATGTTTCAGTGATTTT
TTCGTTTTCGTTTTCCAGCGGTATCCGACGCCAACTTAGGAACATACATT
TCTGTGGCGTCCGAACAAACTGCAAACCTCTTCCCGACGATGTCAACATA
AAGCACAAAGAACCCCACAAAACAAAAACAAAAAAGACGAAAGGAAATGC
AAAAAGGAACTGATGCAGGTTGAATCACAACTCCCTGCGTGGACGTGACG
TACTGTCCCTGTTAAGCTACCGGCGTACTGCTGATTTTTGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12985:1584..2126+

>mRNA_L-elsbetiae_contig12985.2357.1 ID=mRNA_L-elsbetiae_contig12985.2357.1|Name=mRNA_L-elsbetiae_contig12985.2357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig12985:1584..2126+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGACTTTCGTCGGCGGTTCGCAGTATGGCGGTACCGCGAATAAT
GACGGGGCTTCTGTCGGTAGTTCGCAATATGGTGGTACTGCCTTCGGCGG
GAAGCGGTACTACTTGTAGTACCAAATATGGCGGTAAACCTCTGGCGGGA
ATACAATTCGGTGGTCATGTTTCAGTGATTTTTTCGTTTTCGTTTTCCAG
CGGTATCCGACGCCAACTTAGGAACATACATTTCTGTGGCGTCCGAACAA
ACTGCAAACCTCTTCCCGACGATGTCAACATAAAGCACAAAGAACCCCAC
AAAACAAAAACAAAAAAGACGAAAGGAAATGCAAAAAGGAACTGAATGGC
GGGACTTTCGTCGGCGGTTCGCAGTATGGCGGTACCGCGAATAATGACGG
GGCTTCTGTCGGTAGTTCGCAATATGGTGGTACTGCCTTCGGCGGGAAGC
GGTACTACTTGTAGTACCAAATATGGCGGTAAACCTCTGGCGGGAATACA
ATTCGGTGGTCATGTTTCAGTGATTTTTTCGTTTTCGTTTTCCAGCGGTA
TCCGACGCCAACTTAGGAACATACATTTCTGTGGCGTCCGAACAAACTGC
AAACCTCTTCCCGACGATGTCAACATAAAGCACAAAGAACCCCACAAAAC
AAAAACAAAAAAGACGAAAGGAAATGCAAAAAGGAACTGA
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