mRNA_L-elsbetiae_contig12980.2356.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: D8LHT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT4_ECTSI) HSP 1 Score: 285 bits (729), Expect = 1.700e-94 Identity = 129/169 (76.33%), Postives = 145/169 (85.80%), Query Frame = 1 Query: 1 LGPQSAAQCIDALHGSSVIMGYVELLRHPMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPVQQ 507 +GP SA C+DALH SSVIMGYVELLR PM+ELGR+CD+FTMMRHPIDRLVSAFYYCP +D+QVRP KWCG SHP+ +TSRLLDFAR+DW CKAM+QLSFASYCPPGAFC+ + + PPT L EDWSLLA AED LLSY AVGIFEEWELSM+LFDA +SSPVQQ Sbjct: 64 IGPSSAEACLDALHHSSVIMGYVELLRDPMEELGRRCDYFTMMRHPIDRLVSAFYYCPTFHDKQVRPNKWCGGHSHPDPLTSRLLDFAREDWMCKAMFQLSFASYCPPGAFCEHDMVEEPPTHLNGVEDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQ 232
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI) HSP 1 Score: 188 bits (477), Expect = 3.400e-55 Identity = 84/161 (52.17%), Postives = 116/161 (72.05%), Query Frame = 1 Query: 25 CIDALHGSSVIMGYVELLRHPMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPVQQ 507 C++A++ S++I GY EL+R+P++ R+CD+FTM+RHPIDRLVSAF+YCP +D Q+RPRKWCG HP T RLLDFA++ W+ KA Q++F YCPP FCD+ ++P L E +L + ++TL Y AVGI E W+LSMQLF+A V SPV++ Sbjct: 190 CLEAINSSAIITGYAELIRYPLEVNRRECDYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHAEHPVPATERLLDFAQESWQNKAFKQMTFGLYCPPDTFCDEAEVESPQM-LDEPGMLDILQQVQNTLAGYTAVGIMEHWDLSMQLFNARVRSPVRE 349
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE) HSP 1 Score: 184 bits (466), Expect = 9.700e-54 Identity = 82/159 (51.57%), Postives = 112/159 (70.44%), Query Frame = 1 Query: 25 CIDALHGSSVIMGYVELLRHPMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPV 501 C+ A+H + VI+GY ELLR+P++ +GR+C++FT+MRHPIDRL+SAF+YCP D Q RP KWCG + P+ +T RL++FA+ W+ KA Q++F YCPP AFC+Q + E W LL + E L +Y AVGI E W+LSMQLF+A V+SPV Sbjct: 171 CLKAMHSAPVIVGYAELLRYPLEVIGRECEYFTVMRHPIDRLLSAFFYCPAYGDVQDRPPKWCGYANDPQPVTDRLVEFAKYGWKNKAFRQMTFGLYCPPNAFCEQA-EPGAQQAVHEPGGWILLEQIEAILATYTAVGILEYWDLSMQLFNARVTSPV 328
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: A0A6H5K0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M4_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.130e-53 Identity = 82/163 (50.31%), Postives = 115/163 (70.55%), Query Frame = 1 Query: 25 CIDALHGSSVIMGYVELLR--HPMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPVQQ 507 C++A++ S++I GY EL+R +P++ R+C +FTM+RHPIDRLVSAF+YCP +D Q+RPRKWCG + HP T RLLDFA++ WR +A Q++F YCPP FC++ D+P L E +L + +D L Y AVGI E W+LS+QLF+A V SPV++ Sbjct: 33 CLEAINSSAIITGYAELIRRVYPLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEEAEVDSPQM-LDEPGILDVLQQVQDILAGYTAVGIMEHWDLSIQLFNARVRSPVRE 194
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.240e-48 Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 1 Query: 4 GPQSAAQCIDALHGSSVIMGYVELLRH--PMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPVQ 504 G + C +A + S+VIMGY EL+R P++ + R C++FT++RHP+DRLVSAF+YCP +D Q+RP KWCG P T RLL+FA++ W+ A Q++F YCP G C+ T + P L E +L K ED L Y AVGI E W+LSMQLF+A V SPV+ Sbjct: 78 GGKRINSCKEAFNSSAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYCPTDHDLQLRPPKWCGYADDPLPATDRLLEFAQQHWKNMAYKQMTFGMYCPHGLICEATEVETAPG-LDEPHGLDVLQKVEDILSGYTAVGIMEHWDLSMQLFNARVRSPVR 245
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE) HSP 1 Score: 167 bits (423), Expect = 3.500e-48 Identity = 80/170 (47.06%), Postives = 109/170 (64.12%), Query Frame = 1 Query: 4 GPQSAAQCIDALHGSSVIMGYVELLRH--PMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPVQQ 507 G + C +A + S+VIMGY E +R P++ + + C++FT++RHP+DRLVSAF+YCP+ +D Q RP KWCG HP T RLLD+A++ W+ A Q++F YCP G C+ T P L E +L K ED L Y AVGI E W+LSMQLF+A V SPV++ Sbjct: 78 GGEKTNSCKEAFNSSAVIMGYAEAMRQDVPLEAVRKDCEYFTLLRHPVDRLVSAFFYCPKEHDVQSRPPKWCGYADHPLPATDRLLDYAQQYWKNMAYKQMAFGMYCPHGLICEATEVRTAPG-LDEPHGLDVLQKVEDILSRYTAVGIMEHWDLSMQLFNARVRSPVRE 246
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: A0A6H5JUF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF0_9PHAE) HSP 1 Score: 157 bits (397), Expect = 2.970e-45 Identity = 76/166 (45.78%), Postives = 100/166 (60.24%), Query Frame = 1 Query: 73 LLRHPMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDN---------------------PPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPVQQ 507 L +P++ R+C +FTM+RHPIDRLVSAF+YCP +D Q+RPRKWCG + HP T RLLDFA++ WR +A Q++F YCPP FC+ +N PP L E +L + +D L Y AVGI E W+LSMQLF+A V SPV++ Sbjct: 2 LCAYPLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEVAEVNNVSQCETFVVGVGSLDGLREVGPPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSMQLFNARVRSPVRE 167
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: A0A6H5JQY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY1_9PHAE) HSP 1 Score: 139 bits (351), Expect = 2.680e-39 Identity = 57/108 (52.78%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 25 CIDALHGSSVIMGYVELLR--HPMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQ 342 C++A++ S++I GY EL+R +P++ R+C++FTM+RHPIDRLVSAF+YCP +D Q+RPRKWCG + HP T RLLDFA++ W+ A Q++F YCPP FC++ Sbjct: 33 CLEAINSSAIITGYAELIRRVYPLEVERRECEYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATERLLDFAQESWQNMAFKQMTFGLYCPPDTFCEE 140
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: D7FJX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX1_ECTSI) HSP 1 Score: 127 bits (320), Expect = 9.230e-35 Identity = 62/125 (49.60%), Postives = 77/125 (61.60%), Query Frame = 1 Query: 127 MRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPPTKLQEFEDWSLLAKAEDTLLSYVAVGIFEEWELSMQLFDATVSSPV 501 MRHPIDRL+SAF+YCP D Q RP KWCG + P+ +T RL++FA W+ KA Q++F YCPP AFC+Q AE L +Y AVGI E W+LSMQLF+A V+SPV Sbjct: 1 MRHPIDRLLSAFFYCPADGDVQDRPTKWCGYANDPQPVTDRLVEFAEYGWKNKAFRQMTFGLYCPPNAFCEQ---------------------AEGILATYTAVGILEYWDLSMQLFNARVTSPV 104
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Match: A0A6H5JXF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF3_9PHAE) HSP 1 Score: 112 bits (279), Expect = 6.230e-29 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1 Query: 85 PMQELGRQCDFFTMMRHPIDRLVSAFYYCPQINDRQVRPRKWCGTQSHPESITSRLLDFARKDWRCKAMYQLSFASYCPPGAFCDQTISDNPP 363 P++ + + C++FT++RHP+DRLVSAF+YCP +D Q RPRKWCG HP T RLL+FA++ W+ A Q+++ YCP G C+ T N P Sbjct: 2 PLEAVRKDCEYFTLLRHPVDRLVSAFFYCPTDHDIQKRPRKWCGHVDHPLPATDRLLEFAQQFWKNMAYKQMAYGMYCPRGHICEATEVQNLP 94 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12980.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12980.2356.1 >prot_L-elsbetiae_contig12980.2356.1 ID=prot_L-elsbetiae_contig12980.2356.1|Name=mRNA_L-elsbetiae_contig12980.2356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp LGPQSAAQCIDALHGSSVIMGYVELLRHPMQELGRQCDFFTMMRHPIDRLback to top mRNA from alignment at L-elsbetiae_contig12980:2867..5296+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12980.2356.1 ID=mRNA_L-elsbetiae_contig12980.2356.1|Name=mRNA_L-elsbetiae_contig12980.2356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2430bp|location=Sequence derived from alignment at L-elsbetiae_contig12980:2867..5296+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12980:2867..5296+ >mRNA_L-elsbetiae_contig12980.2356.1 ID=mRNA_L-elsbetiae_contig12980.2356.1|Name=mRNA_L-elsbetiae_contig12980.2356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig12980:2867..5296+ (Laminarionema elsbetiae ELsaHSoW15)back to top |