prot_L-elsbetiae_contig1298.2353.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1298.2353.1
Unique Nameprot_L-elsbetiae_contig1298.2353.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length296
Homology
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: A0A6H5JC42_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC42_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 2.550e-91
Identity = 152/223 (68.16%), Postives = 170/223 (76.23%), Query Frame = 0
Query:   11 NLNLSAAEEGGVSATAATGSGSSSRANPDASIIPSST--RRTSRSSRVSLFGLRSRRFGIFLLMLSVYSLVEAGALNWALVAWGLCGSLLFVGLIWLARVMNAFAIRSNAARRRQHRIPRGALEARLQMHHPGIELGRLRLLLVDRDFTGEDYQALLDLDETNDVPSTVGASEGEIRRNPSFLVREPVPDSVVKPKSCSICLYPFKPGERVRIIPCLHQFHTE 231
            N +LS AEEGG                  A+I P  T  RR++   R SL  LRSRRF   LLM+ V+SLV+ G LNW L+AWG  GSLL V L  L R++N +AIRS+ ARRR+ RIPRGALEARLQ+HHPGIELGRLRLLLVDRDFTGEDYQALLDLDE NDVPSTVGASEGEI+RNPSF++ EP  DSVVKPK+CSICLYPFKP ERVRIIPCLHQFHTE
Sbjct:    9 NASLSNAEEGGA-----------------ATISPRDTASRRSAGPLRASLIPLRSRRFVGLLLMICVFSLVQVGVLNWTLMAWGFFGSLLVVSLFRLVRLVNGYAIRSDTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNDVPSTVGASEGEIKRNPSFVIPEPAADSVVKPKNCSICLYPFKPRERVRIIPCLHQFHTE 214          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: A0A836CGW1_9STRA (Ubiquitin-protein ligase/ zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.730e-26
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 0
Query:  126 IPRGALEARLQMHHPGIELG-RLRLLLVDRDFTGEDYQALLDLDETNDVPSTVGASEGEIRRNPSFLVREPVPDSVVKPKSCSICLYPFKPGERVRIIPCLHQFHTE 231
            + R   E+R+   HP +  G RL LLL+DRDF G+DYQ LL+LD  N  P+ VGA+E EIRRNP F V+E   D+    +SCSICL+ F  GE VRI+PCLHQ+H+E
Sbjct:  118 VTRTQWESRMLARHPQLANGGRLALLLMDRDFDGDDYQMLLELDADNVAPAAVGATEAEIRRNPCFTVQES--DAKQLARSCSICLHTFCAGEEVRIVPCLHQYHSE 222          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: W7T4H0_9STRA (Zinc finger, RING-type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4H0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.680e-16
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 0
Query:  130 ALEARLQMHHPGIELGRLRLLLVDRDFTGEDYQALLDLDETN-DVPSTVGASEGEIRRNPSFLVREPVPDSVVKPKSCSICLYPFKPGERVRIIPCLHQFH 229
            A+E  + +   G +  RL+L+L+DRDF+ EDY+ L  LDE   D    +GA++ E+ R P+++V     D+  K   C ICL  F  GE VRI+PCLHQFH
Sbjct:   85 AVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIV-----DTETKLNKCFICLNDFLKGEVVRILPCLHQFH 180          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: A0A7S0ERE3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ERE3_9CRYP)

HSP 1 Score: 79.0 bits (193), Expect = 1.040e-13
Identity = 59/171 (34.50%), Postives = 89/171 (52.05%), Query Frame = 0
Query:   71 LMLSVYSLVEAGALNWALVAWGLCGSLLFVGLIWLARVMNAFAIRSNAARRRQHRIPRGALEARLQ-MHHPGIELGR-----LRLLLVDRDFTGEDYQALLDLDETNDVPSTVGASEGEIRRNPSFLVREPVPDSVVKPKSCSICLYPFKPGERVRIIPCLHQFHTEVSGR 235
            +ML V+  +  GA    ++   + G+++ +G+I       +  +R  A R+R+ R   G + + ++ + H G  LG      LRL LV+RDFT  DY+ALL LD+     ST G ++  I   PS+ V E       K   C++CL P   GE  RI+PCLHQFH +   R
Sbjct:   62 IMLLVFLAIIQGASRMPMIF--VLGTIMSLGMI-------SMRVRLEAERQRRLRSMFGEVGSEMRVLQHWGRNLGNISQDHLRLSLVNRDFTSNDYEALLSLDQA--AGSTRGVNQDRIDHLPSYSVAEGN-----KAPPCAVCLDPLNAGELARILPCLHQFHKDCVDR 216          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: L1IY96_GUITC (RING-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IY96_GUITC)

HSP 1 Score: 71.2 bits (173), Expect = 8.160e-12
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 0
Query:  142 IELGRLRLLLVDRDFTGEDYQALLDLDETNDVPSTVGASEGEIRRNPSFLVREPVPDSVVKPKSCSICLYPFKPGERVRIIPCLHQFHTEVSGR 235
            I    LRL L++RDFT  DY+ALL LDE      + GA++  I R P + V E       K   C++CL P    ++ RI+PCLHQFH +   R
Sbjct:   22 ISQDHLRLSLINRDFTSNDYEALLSLDEA--AGRSRGANQDRIDRLPCYTVAEGS-----KAPPCTVCLDPLNVSDQARILPCLHQFHKDCIDR 108          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: A0A1Z5JX84_FISSO (E3 ubiquitin-protein ligase RNF130 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JX84_FISSO)

HSP 1 Score: 67.4 bits (163), Expect = 2.310e-9
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 0
Query:  131 LEARLQMH-HPGIELGRLRLLLVDRDFTGEDYQALLDLDE-----TNDVPSTVGASEGEIRRNPSFLVREPVPDSVVKP---KSCSICLYPFKPGERVRIIPCLHQFHT 230
            L A+ + H  P I +  LRL++ +RD TGEDY +LL   E        + + +GAS  EI R PS  +     D ++       C+ICL  ++ GER+R +PCLH FH+
Sbjct:  138 LNAQRRFHGQPPISVESLRLVMRERDMTGEDYGSLLQFHEEAGPAVGALLNQIGASSEEIARLPSRTLT--ATDDILTDHHQSRCAICLENYQAGERIRTVPCLHSFHS 244          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: A0A1Z5JU57_FISSO (RING-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU57_FISSO)

HSP 1 Score: 65.1 bits (157), Expect = 1.490e-8
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 0
Query:  147 LRLLLVDRDFTGEDYQALLDLDE-----TNDVPSTVGASEGEIRRNPSFLVREPVPDSVVKPKS-----CSICLYPFKPGERVRIIPCLHQFHTEVSGRTRGGRA 241
            LRL++ +RD TGEDY +LL  +E        + + +GAS  EIRR PS  +     D ++K        C+ICL  ++ GE +R +PCLH FH+    R    RA
Sbjct:  155 LRLVMRERDMTGEDYDSLLQFNEEAGPAVGALLNQMGASPEEIRRLPSRTLTPT--DDILKSMDHHQSRCAICLENYQIGELIRTVPCLHSFHSNCIDRWLADRA 257          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: M2XKQ1_GALSU (RING-type domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XKQ1_GALSU)

HSP 1 Score: 64.7 bits (156), Expect = 2.360e-8
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 0
Query:  148 RLLLVDRDFTGEDYQALLDLDETNDVPSTV-------GASEGEIRRNPSFLVREP-----------------VPDSVVKPK-----SCSICLYPFKPGERVRIIPCLHQFHT 230
            +L   DRDFT  DY+ALL+LD    +PST        GAS+  I R PS++  +P                 VP    K       SCSICL  +  GE++R++PC+HQFH+
Sbjct:  157 QLAFSDRDFTERDYEALLELDR---LPSTEALQEFLQGASDDLIERIPSYIFVQPDQNLAKNELQENTRQSSVPSFAPKENEDTAMSCSICLEAYVDGEQLRVLPCMHQFHS 265          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: A0A7S0SWH3_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWH3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.040e-8
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 0
Query:  146 RLRLLLVDRDFTGEDYQALLDLDETNDVP-----STVGASEGEIRRNPS--FLVREPVPDSVVKPKSCSICLYPFKPGERVRIIPCLHQFH 229
            RLR+ L+ R+FTG DY+ L +LDE          +  GA +  I R PS  F   E    +    ++CSICL PF+ G+ +R + CLHQFH
Sbjct:   88 RLRMTLMRREFTGNDYELLQELDEDTAFGGIRSNNNRGAQQEYINRLPSHVFSQSEHTSSNDSMTRNCSICLGPFEDGDTLRTLFCLHQFH 178          
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Match: A0A7S3D9V2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D9V2_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 6.190e-8
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 0
Query:  119 ARRRQHRIPRGALEARLQMHHPGIELGRLRLLLVDRDFTGEDYQALLDLDETNDVPSTVGASEGEIRRNPSFLV---REPVPDSVVKPKSCSICLYPFKPGERVRIIPCLHQFHTE 231
            AR  Q ++ R      +++H   ++  RL LL+ DRDF   DY+ALL LDE  +    V  +  ++ R P + +    + + D   +   CSICL    PG   R++PC+HQFH +
Sbjct:  100 ARTLQLQLDRSHSLTNMRVH---LDRERLNLLMTDRDFDANDYEALLALDEEMNH-GKVALTSTDLDRFPIYTMPPREDNLKDEGQEAYRCSICLELLLPGNVARLLPCMHQFHAD 211          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1298.2353.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC42_9PHAE2.550e-9168.16RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CGW1_9STRA2.730e-2654.21Ubiquitin-protein ligase/ zinc ion binding protein... [more]
W7T4H0_9STRA9.680e-1643.56Zinc finger, RING-type n=2 Tax=Nannochloropsis gad... [more]
A0A7S0ERE3_9CRYP1.040e-1334.50Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
L1IY96_GUITC8.160e-1241.49RING-type domain-containing protein n=1 Tax=Guilla... [more]
A0A1Z5JX84_FISSO2.310e-937.61E3 ubiquitin-protein ligase RNF130 n=1 Tax=Fistuli... [more]
A0A1Z5JU57_FISSO1.490e-838.10RING-type domain-containing protein n=1 Tax=Fistul... [more]
M2XKQ1_GALSU2.360e-837.50RING-type domain-containing protein n=1 Tax=Galdie... [more]
A0A7S0SWH3_9STRA3.040e-840.66Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3D9V2_9EUKA6.190e-833.62Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 167..263
e-value: 5.3E-7
score: 31.2
IPR001841Zinc finger, RING-typePFAMPF17123zf-RING_11coord: 206..230
e-value: 1.4E-8
score: 34.4
NoneNo IPR availablePANTHERPTHR45931:SF3E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATEDcoord: 136..230
NoneNo IPR availablePANTHERPTHR45931FAMILY NOT NAMEDcoord: 136..230
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..84
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..295
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 85..89
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 205..230
NoneNo IPR availableTMHMMTMhelixcoord: 92..114
NoneNo IPR availableTMHMMTMhelixcoord: 66..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1298contigL-elsbetiae_contig1298:12343..17010 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1298.2353.1mRNA_L-elsbetiae_contig1298.2353.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1298 10277..17419 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1298.2353.1 ID=prot_L-elsbetiae_contig1298.2353.1|Name=mRNA_L-elsbetiae_contig1298.2353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
MSADVVSGAPNLNLSAAEEGGVSATAATGSGSSSRANPDASIIPSSTRRT
SRSSRVSLFGLRSRRFGIFLLMLSVYSLVEAGALNWALVAWGLCGSLLFV
GLIWLARVMNAFAIRSNAARRRQHRIPRGALEARLQMHHPGIELGRLRLL
LVDRDFTGEDYQALLDLDETNDVPSTVGASEGEIRRNPSFLVREPVPDSV
VKPKSCSICLYPFKPGERVRIIPCLHQFHTEVSGRTRGGRARRAGGLAGC
TVPQVEELNSAPHFAAAGLQMDLWLISLDLSCGGAFAQRRKNASD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING