prot_L-elsbetiae_contig12976.2352.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig12976.2352.1
Unique Name	prot_L-elsbetiae_contig12976.2352.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	129

Homology

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BLAST of mRNA_L-elsbetiae_contig12976.2352.1 vs. uniprot
Match: A0A6H5JD07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.560e-28
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 0

Query:    3 YWTFWGVLF-GTILTWVFAVSAAADDAWLSVNGVKMVSFEGDCLSEALDD--DGDEACSLYTAAKAFQIMGTLIISFVLVVVAVAAFMQAPITGKLGLAAGIVLAVFSVFQLLAFALMAAFADKR 124
            YW +W VLF  TI TW+FAV+AAADDAW++           D     L +  DG + C LY AA AFQ + T+++S VLV+V VAAF  AP+TGKLGLA GI+L VF+VF+LLAF   AA+ ++R
Sbjct:    6 YWGYWIVLFVTTIFTWIFAVAAAADDAWIA-----------DAYEAGLGESCDGYDFCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPVTGKLGLAVGIMLFVFAVFELLAFCTYAAYIEER 119

[Close]

BLAST of mRNA_L-elsbetiae_contig12976.2352.1 vs. uniprot
Match: D7FWH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.120e-21
Identity = 58/131 (44.27%), Postives = 76/131 (58.02%), Query Frame = 0

Query:    1 QVYWTFWGVLFGTILTWVFAVSAAADDAWLSVNGVKMVSFEGDCLSEALDDDGDEACSLYTAAKAFQIMGTLIISFVLVVVAVAAFMQAPITGKLGLAAGIVLAVFSVFQLLAFALMAAFADK--RKTDTY 129
            +V+  +W V F T +TW+FAV+AA+DDAWL   G  ++     C   A        C  Y    AFQ    ++IS  +VV+ VAAF  AP TG+LG AAG +L VFSV QL AF++MAA A +  R  D Y
Sbjct:   44 KVFLVYWAVCFATAITWLFAVAAASDDAWLQFEGYPLLKLGERCEFSA------SFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNY 168

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig12976.2352.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig12976.2352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JD07_9PHAE	9.560e-28	52.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWH1_ECTSI	1.120e-21	44.27	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 26..67
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 90..94
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 68..89
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 122..129
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..25
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 95..121
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.915
None	No IPR available	TMHMM	TMhelix		coord: 99..121
None	No IPR available	TMHMM	TMhelix		coord: 65..87
None	No IPR available	TMHMM	TMhelix		coord: 2..24

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig12976	contig	L-elsbetiae_contig12976:151..2144 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig12976.2352.1	mRNA_L-elsbetiae_contig12976.2352.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig12976 151..2144 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig12976.2352.1 ID=prot_L-elsbetiae_contig12976.2352.1|Name=mRNA_L-elsbetiae_contig12976.2352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
QVYWTFWGVLFGTILTWVFAVSAAADDAWLSVNGVKMVSFEGDCLSEALD
DDGDEACSLYTAAKAFQIMGTLIISFVLVVVAVAAFMQAPITGKLGLAAG
IVLAVFSVFQLLAFALMAAFADKRKTDTY