prot_L-elsbetiae_contig1296.2344.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1296.2344.1
Unique Nameprot_L-elsbetiae_contig1296.2344.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length549
Homology
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BLAST of mRNA_L-elsbetiae_contig1296.2344.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 3.390e-74
Identity = 409/568 (72.01%), Postives = 435/568 (76.58%), Query Frame = 0 
Query:    1 MEADVVTYNSLINVLRWGGQWKKALEVLEGMNAKVAAGDGDGVQPXXXXXXXXXXXXXXXXXXXXXXRLIDEMRRRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDIVTXXXXXXXXXXXXXXXXXXXXXXXMREAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLTPDQASFNAVIRAARRGGQHKLSMKLLASMVEADLAPDAVTVGELISSLSDRGRWGEAQRVVEIAEKTGAIPPSSLDSSFEVDVSHLPSAIAKVKVRATLQNVLAIWKES-GPAEGGKSSSAAGPLEDLVFVTGXXXXXXXXXXXXXXXXW------DDG------DVIIDVANAD-------EIPXXXXXXXXXXXXXXXXXXXXXGPAGRGGWRVARYSDRSFSLGNLLADHLRTAFDPPLRAEPGEFVAGCLVVKAEDLEAWASAQQGGES 548
            +E DVVTYNSLINVLRWGGQ  +ALE+L+GMNAK  AG       XXXXXXXXXXXXXXXXXXXXXX LI EMRR+GL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPD+VTXXXXXXXXXXXXXXXXXXXXXXXMREAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXX     EG++PD ASF                                VTVGELISSLSDRGRW +AQRVVEIAEKTGAIP SSLDS FEVDVS LP AIAKVK R TLQ +L +W+ES G AEGG ++S+  PLEDLVFVTG                W      DDG      D++IDV  +D       E       XXX               AGRGGWRVAR+SDRSF LG +L +HLRTAF+PPL+A+P EFVAGCLVVK EDLE WA+AQ+GG S
Sbjct:  576 VEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGX---XXXXXXXXXXXXXXXXXXXXXXXXXXLIGEMRRKGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXXXMREAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXXSKLLEEGMSPDPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVKARGTLQRILDVWRESSGNAEGGGATSS--PLEDLVFVTGTGSATKPSPAPDTAAPWAGDVIDDDGSAGDGKDIVIDVTVSDDTSTTSTESARAEPTXXXSASVETMGTAASGAAAGRGGWRVARFSDRSFGLGRVLVEHLRTAFNPPLKAQPREFVAGCLVVKVEDLETWAAAQEGGGS 1138
[Close]
BLAST of mRNA_L-elsbetiae_contig1296.2344.1 vs. uniprot
Match: A0A835YR37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR37_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.990e-6
Identity = 58/209 (27.75%), Postives = 78/209 (37.32%), Query Frame = 0 
Query:  339 LISSLSDRGRWGEAQRVVEIAEKTGAIPPSSLDSSFEVDVSHLPSAIAKVKVRATLQNVLAIWKESGPAEGGKSSSAAGPLEDLVFVTGXXXXXXXXXXXXXXXXWDDGDVIIDVANADEIPXXXXXXXXXXXXXXXXXXXXXGPAGRGGWRVARYS-DRSFSLGNLLADHLRTAFDPPLRAEPGEFVAGCLVVKAEDLEAWASAQQGG 546
            ++++L + G    A  V   A   GA+P S LDS +E DVS LP A+A++KVRA L+ VLA       A        A   EDLVFV                                                           G G  R  R + +R F + + L+  L T + PPL A      AGC+ V  E + AW +A   G
Sbjct:    1 MVTALEEGGLREAADAVYADATARGALPDSVLDSDWEFDVSALPPAVARLKVRAVLRGVLAA------ARSXXXXXXAPAAEDLVFV----------------------------------------------------------CGTGVQRSVRGAHERRFDMRSYLSAVLATEYTPPLAAHTPPMQAGCIAVPRERVAAWIAAHIDG 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1296.2344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLG9_ECTSI3.390e-7472.01PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YR37_9STRA1.990e-627.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 209..323
e-value: 3.0E-9
score: 36.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 83..117
e-value: 2.8E-6
score: 25.1
coord: 121..152
e-value: 6.0E-7
score: 27.2
coord: 48..81
e-value: 2.0E-9
score: 35.0
coord: 265..297
e-value: 4.8E-6
score: 24.4
coord: 227..256
e-value: 1.9E-6
score: 25.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 115..162
e-value: 1.9E-11
score: 44.0
coord: 45..93
e-value: 7.8E-14
score: 51.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 6..31
e-value: 3.3E-4
score: 20.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 4..34
score: 9.284
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 225..259
score: 11.488
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 262..296
score: 11.444
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..80
score: 13.603
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 116..150
score: 11.323
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 332..366
score: 8.736
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 151..181
score: 8.791
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 297..331
score: 8.999
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 81..115
score: 10.643
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 186..216
score: 6.807
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 97..220
e-value: 2.4E-29
score: 104.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..96
e-value: 1.7E-26
score: 94.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 221..397
e-value: 4.8E-35
score: 123.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..127
coord: 42..180
coord: 186..361
coord: 125..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1296contigL-elsbetiae_contig1296:125..6230 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1296.2344.1mRNA_L-elsbetiae_contig1296.2344.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1296 116..6230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1296.2344.1 ID=prot_L-elsbetiae_contig1296.2344.1|Name=mRNA_L-elsbetiae_contig1296.2344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=549bp
MEADVVTYNSLINVLRWGGQWKKALEVLEGMNAKVAAGDGDGVQPDVVTY
NSAIAACASGGEWEKASRLIDEMRRRGLKPDRFSYTSAIHACGKARVPSE
ALRLLRAMETNNVVPDVIAMTACMDALAAGGKWSEAIKVLDEMRSKGIAP
NERTYKAAIQACGRGGQWQRALELLSRLENRASGATVQEYNCAMMACVTG
GESGRALDLLEQMKANKGGVNAGPDIVTYTSAIMACSSKGKWDKALSLLD
EMREAGPRTQPNVRSYTAAIAACGRARKWEEAVALHSKLREEGLTPDQAS
FNAVIRAARRGGQHKLSMKLLASMVEADLAPDAVTVGELISSLSDRGRWG
EAQRVVEIAEKTGAIPPSSLDSSFEVDVSHLPSAIAKVKVRATLQNVLAI
WKESGPAEGGKSSSAAGPLEDLVFVTGTGSGTAPPPAPAAATPWDDGDVI
IDVANADEIPTGSSSSSSSSSSTSVETATATGPAGRGGWRVARYSDRSFS
LGNLLADHLRTAFDPPLRAEPGEFVAGCLVVKAEDLEAWASAQQGGES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf