prot_L-elsbetiae_contig1290.2308.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1290.2308.1
Unique Nameprot_L-elsbetiae_contig1290.2308.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length415
Homology
BLAST of mRNA_L-elsbetiae_contig1290.2308.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 2.500e-96
Identity = 210/385 (54.55%), Postives = 224/385 (58.18%), Query Frame = 0
Query:    3 ISEENTLRTRALQRTRMLETRRL--SSSNGRFNAVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESQPSPAGKPEAG---------DSSVIAAWGAAPGGV-TPAPSAAXXXXXXXXXXXXXXXXXXXXXXXXSESG----------ANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDEEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIFATMQQRTNHFSTYARPTEVTYAHLIWASVEAGDFARALEVWRQQLSAGVPPGSRSTRAALAACGGAXXXXXXXXXXXXXXXXXXXXXXXXXLQLVNLCRANGLESVAARIMRERSKMAAT 365
            ISEENTLRTRALQRTRMLETRR   SSS  R  A  ++                                                         +  GK  A          + SVIAAW ++  G  T  P+                          +ES           ANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVD+ EGGGLQPDAVTYTSLIKAAARA PPRVEEAEEIFATMQQRTNHFST+ARPTEVTYAHL+ ASV A D+ RALE+WRQQLSAGV PG RSTRAALAACGGA                         L LVNLCRANGL+SVAARIMRERSK  AT
Sbjct:  694 ISEENTLRTRALQRTRMLETRRSPPSSSAVRRPAEGSSVAAAASAPGAPAQSSPLPSTAPGTTSGGASTLPRDGVDDRGKSLDVRADAVGTTKVVAGGGKGPAAAATRAHAKEEPSVIAAWSSSSSGRGTAGPATKAGGVGGYASSGRSEASLRGPTADPTESSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANGLQSVAARIMRERSKTDAT 1078          
BLAST of mRNA_L-elsbetiae_contig1290.2308.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 170 bits (431), Expect = 8.990e-43
Identity = 94/208 (45.19%), Postives = 127/208 (61.06%), Query Frame = 0
Query:  155 ANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDEEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIFATMQQRTNHFSTYARPTEVTYAHLIWASVEAGDFARALEVWRQQLSAGVPPGSRSTRAALAACGGAXXXXXXXXXXXXXXXXXXXXXXXXXLQLVNLCRANGLESVAARIMRERSKM 362
            ++PA DNLFRVFLVF EM+S+GV+PD  AYNAL+N+CA +G+ +RA+ V+R M ++E    L PDA+T+TSLIK AA A     + AEEIFA MQQRTNHFST+ RP+E T+ H+I A++    F+R  E+W Q L+ G+ P SR+    L AC                            L LV LC + G+   A  I+R+RS +
Sbjct:  653 SDPAADNLFRVFLVFGEMKSQGVQPDRPAYNALINSCAAVGDLERAMAVLRQMYEDEHC--LPPDAITFTSLIKTAAAAH--NADAAEEIFAAMQQRTNHFSTFHRPSERTFRHMITANMNIKRFSRVQELWAQMLAEGLAPSSRTCSLVLGACRHQGDLTQALSVYGVMNTAGIRPDNRSLLSLVRLCESAGMADKARDIIRDRSSL 856          
BLAST of mRNA_L-elsbetiae_contig1290.2308.1 vs. uniprot
Match: A0A7S0XEC2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEC2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.650e-20
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 0
Query:  160 DNLFRVFLVFQEMR-SRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDEEEGGGLQPDAVTYTSLIKAAA-RASPPRVEEAEEIFATMQQRTNHFSTYARPTEVTYAHLI 270
            D+LFR++LVFQEM+ +  ++ D   YN L+N CA +G+ DRAL  +  M +     G++P+ +TYTSLIKA A  +    +E AE IF  MQQR+NHFS Y +P E+TY  L+
Sbjct:  173 DDLFRLYLVFQEMKYNPAIQLDTAVYNTLINACAGVGDIDRALETMTAMQEN----GIEPNVITYTSLIKACAFNSRNEMIELAENIFNEMQQRSNHFSNYIQPNEMTYEKLM 281          
BLAST of mRNA_L-elsbetiae_contig1290.2308.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC)

HSP 1 Score: 75.5 bits (184), Expect = 6.540e-11
Identity = 58/204 (28.43%), Postives = 85/204 (41.67%), Query Frame = 0
Query:  160 DNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDEEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIFATMQQRTNHFSTYARPTEVTYAHLIWASVEAGDFARALEVW-RQQLSAGVPPGSRSTRAALAACGGAXXXXXXXXXXXXXXXXXXXXXXXXXLQLVNLCRANGLESVAARIMRERSKM 362
            +NLFR+FLVFQEM+S GV+PDL AYN L++ C   GE ++A+ V                                     A      MQQRTNHF++   P+E+T+  L+ A+  A    R  E++   Q   G+ P  R+   A+                                 L++L    GL  +A+RI ++RS M
Sbjct:  642 ENLFRIFLVFQEMQSSGVQPDLCAYNTLLDACGRAGEVEKAMEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA------MQQRTNHFASCVLPSELTFKQLMLANRNAYRLRRVFELFDMMQRQHGIRPTLRTGAIAIQLACEVKQVERALDIYRTLTANRVRLDNRSLHALLSLLNEKGLHDMASRIRQQRSLM 839          
BLAST of mRNA_L-elsbetiae_contig1290.2308.1 vs. uniprot
Match: A0A7S2E620_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E620_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.320e-8
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 0
Query:  156 NPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDEEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIF 245
            N A   L +VFLVFQEMR  G +PD   YN L+  CA  G+F RA  V+  ++D ++   L+P  V++  +++AA+R+        E+++
Sbjct:  751 NDAKTLLVKVFLVFQEMRDAGAKPDTACYNVLLGACARAGDFTRARDVLNKLMDSDD---LEPTHVSWREMLRAASRSKTASSHLVEQVW 837          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1290.2308.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI2.500e-9654.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEM1_9STRA8.990e-4345.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XEC2_9STRA5.650e-2046.90Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A0G4F8K7_VITBC6.540e-1128.43Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2E620_9STRA6.320e-836.67Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 183..210
e-value: 5.2E-4
score: 18.0
coord: 305..332
e-value: 2.7E-6
score: 25.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 168..207
e-value: 3.8E-4
score: 20.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..251
score: 9.01
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 297..331
score: 9.394
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 180..210
score: 8.824
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 262..296
score: 9.394
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 138..256
e-value: 6.5E-21
score: 77.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 257..370
e-value: 7.1E-16
score: 60.0
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 236..383
e-value: 2.3E-10
score: 40.2
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 165..353

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1290contigL-elsbetiae_contig1290:95..2799 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1290.2308.1mRNA_L-elsbetiae_contig1290.2308.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1290 95..2799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1290.2308.1 ID=prot_L-elsbetiae_contig1290.2308.1|Name=mRNA_L-elsbetiae_contig1290.2308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=415bp
QVISEENTLRTRALQRTRMLETRRLSSSNGRFNAVSAAAAAATAPAPTAA
ADGAAPPSPPPAAQALAAGSGSASGAATAEREQERDGGAEEESQPSPAGK
PEAGDSSVIAAWGAAPGGVTPAPSAAGGVGASSGGGRPEAAAAAAAAAAA
SESGANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRA
LGVVRLMVDEEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIFATMQQ
RTNHFSTYARPTEVTYAHLIWASVEAGDFARALEVWRQQLSAGVPPGSRS
TRAALAACGGAGDVDTALEVYELMREAGIRPNSRSLLQLVNLCRANGLES
VAARIMRERSKMAATTTRRSANVARRYTSSNKADGRRSGGGGSGGSSSSS
SSSSSSSSSSSSRHG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long