mRNA_L-elsbetiae_contig1018.229.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1018.229.1
Unique NamemRNA_L-elsbetiae_contig1018.229.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: D8LK18_ECTSI (Aldehyde dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK18_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 2.560e-119
Identity = 252/459 (54.90%), Postives = 287/459 (62.53%), Query Frame = 1 
Query:    1 FSRAGKGHDPSGAAAGAGAVDPLDVHVEPFAKGEEDSRDGVQEAEMSKEESVRRAAEHFSLFALDGDSGALRWRHDGGAHXXXXXXXXXXXXGRDGRGG---------GHDPDYPGLGGGDLFRRDERSGAA--FESLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVRAVLARTRDGLEAVELATGKPLSAVALPAAR-SGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDVEVGTTPPAVLQRVPAAAAAXXXRXXXXXGAGARSA-----------------GLGP-RSDVVFAVSSGVVSSYDDEGRLRWQDRRGPTWAKPEDSEDTPDSIGGYIVPFALEIGRPSRGGGXXPAGDGGGLTPPHRAEERVLVVGQVRM 1287
            F  +  G DPSG +   GA DPL VHVE F +GEEDSRD V+E +MS+EE  RRAAEHFSLFALDG++G +RW H GGAH      XXXXXX      G         G D DYPG G   L+ + E + AA  FE LA                                     RTRDGLEAVEL+TGKPLSAVALPAA  + AGV+VDLNGDGVVDHVQAVG+RGGQGWGHLH G+AMGHLS++  P+Q    R LPPCYALAVSGLP REQLFN SLCHDAGALF+ QERLSKP +SRS+SRS D+EVG   PA++ R  A  AAXXX XXXXX                        G GP R D VFAVSSGVVSSYDDEGRL+WQDRRGP W + +     P + GGY+VPF LE+G P RG G         + P   AEER+LVVGQ +M
Sbjct:  191 FHHSRAGRDPSGGSPVDGA-DPLGVHVEAFVEGEEDSRDTVEEEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKXXXXXXXXXXXXGIRDYDYFDFGFDLDYPGFGDDLLYNQTEGAAAALAFEGLAAVAGAVGGGSGQ-------------------------RTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQP-ARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKP-NSRSSSRSLDLEVGAASPAIIPRDSAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGEGPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRKDTEGGDPSNGGGYVVPFTLEVGWPGRGRGRI-------INPSPGAEERILVVGQDKM 614
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A6H5JP99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP99_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 5.540e-81
Identity = 187/383 (48.83%), Postives = 214/383 (55.87%), Query Frame = 1 
Query:    1 FSRAGKGHDPSGAAAGAGAVDPLDVHVEPFAKGEEDSRDGVQEAEMSKEESVRRAAEHFSLFALDGDSGALRWRHDGGAHXXXXXXXXXXXXG---RDGRGGGHDPDYPGLGGGDLFRRDERSGAA--FESLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------VVRAVLARTRDGLEAVELATGKPLSAVALPAAR-SGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARH-LPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDVEVGTTPPAVLQRVPAAAAA 951
            F  +  G  PSG +   GA DPL VHVE F +GEEDSRD  +E +MS EE  +RAAEHFSLFALDG++G +RW H GGAH            G    D    G D DYPG GG  L  + E + AA  FE LA                                                                                         +VR VLARTRDGLEAVEL+TGKPLSAVALPAA  + AGV+VDLNGDGVVDHVQAVG+RGGQGWGHLH G+AMG+LS++  P+Q   AR  LPPCYALAVSGLP REQLFN SLCHDAGALF+ QERLSKP +SRS+SRS D+EVG   PA++QR  A A A
Sbjct:  223 FHHSRAGRHPSGGSVVDGA-DPLGVHVEAFVEGEEDSRDTAEEEKMSAEEKGKRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNGGGSGIRDYDYFDFGFDLDYPGFGGDLLSNQTEGTAAALAFEGLAAVAGAVGGGGGRQYRRSLLNHLPHAWSAPSDTRLEITALHRRGTGDRRNGVSAGGVVGEGGGEDHPXXXXXXXXXXXXXXXXXXXXXXGLVRVVLARTRDGLEAVELSTGKPLSAVALPAATGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGYLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKP-NSRSSSRSLDLEVGVASPAIIQRGSAGAGA 603
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A7S2B999_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B999_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.680e-22
Identity = 74/218 (33.94%), Postives = 107/218 (49.08%), Query Frame = 1 
Query:  487 VLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLH----SGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDVEVGTTP-----PAVLQRVPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSYDDEGRLRWQDRRGPTWAK 1113
            V A +  G+EAV L  GKP+ A+ALP      G++ D+NGD ++DH+  V         H +    +   + HLS     A+  +   LPPC A+A+SG+PAREQLFNGSLC   G+L   ++R  +  + +    + +   G  P     P  L R+ A  A                       D +FAVSSGVV+SY  +G L WQ ++ P W +
Sbjct:  128 VFAYSEHGVEAVTLHHGKPVFALALPKG----GLYADVNGDNLIDHLSVVEQH------HANQDNPASPTLSHLSGSAVHARVRDHGLLPPCSAVALSGIPAREQLFNGSLCDHHGSLLSLRDRQERVFNRKRRMSNHEEVRGAEPITVERPQFLGRLVAQHAVTSAPKFY---------------DTIFAVSSGVVTSYRSDGELNWQVQKAPVWGE 320
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A6U3ESI5_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A6U3ESI5_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 5.590e-19
Identity = 74/209 (35.41%), Postives = 98/209 (46.89%), Query Frame = 1 
Query:  487 VLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDVEVGTTPPAVLQRVPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSYDDEGRLRWQDRRGPTWAK 1113
            V+A   +G+E + L +G+ L  + LP      G+ VD+NGDGVVDH++A GS GG G GH     A+G        A GH    +P C+A A SG+PARE LFNGS+C  A  +     R      S   + +  VEV    PAVL+R          R                  D+VF  S G V+ Y   G  RW  R   +WA+
Sbjct:   80 VVAHQEEGIEVLHLFSGRTLCKMLLPPP----GLHVDVNGDGVVDHIEAHGSAGGDGGGHA----AVG--------ADGHA---VPACWAQATSGVPAREHLFNGSICRGASGVTRHGSRHMNGEPSGGYAANAHVEVAA--PAVLRRGEETVVRSLRRAV---------------KDMVFLNSRGEVTCYTHAGHRRWLQRTEASWAR 252
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A5P1F657_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F657_ASPOF)

HSP 1 Score: 94.4 bits (233), Expect = 4.930e-17
Identity = 87/241 (36.10%), Postives = 114/241 (47.30%), Query Frame = 1 
Query:  475 VVRAVLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDVEVGTTPPAVLQRVPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSYDD----EGRL-RWQDRRGPTWAK-PEDSEDTPDSIGGYIVPFALEI 1179
            V   V+A  ++G+EAV LA+G+ +  + LP      G+  D+NGDGV+DHVQ VG                GH ++QR      E   L PC+A+A SG+P REQLFN S+CH A  LF+  +       SRS  RS  V+VGT   A    V         R         RS G     DVVF  + G V+SY      EG + RWQ   G TW+  P  S    D++   +  F L I
Sbjct:  362 VPNVVVAHQKEGIEAVHLASGRTICKLHLPEG----GLHADINGDGVLDHVQVVG----------------GHGAEQRVVTGSMEV--LKPCWAIATSGVPVREQLFNASICHHA--LFNLFQH-----DSRSFGRS--VDVGTLEVATPILVHRDDGQKHKR---------RSHG-----DVVFLTNRGEVTSYSPGLHGEGAIWRWQLTSGATWSNLPSPSGMMEDAVVPTLKSFRLRI 557
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A7R9XN42_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9XN42_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 5.000e-16
Identity = 72/215 (33.49%), Postives = 105/215 (48.84%), Query Frame = 1 
Query:  487 VLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDV--EVGTTPPAVLQR----VPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSYDDEGRLRWQDRRGPTWAK 1113
            ++A  ++G+E V L TG+ L  + LP    G G+  D+NGDGV+DHVQA       GW H H+    G                +P C+A A SG+P +EQLFNGS+C  A  +       ++ +S R+  R ++    + T  PA+L R    +P A+AA          +G      G   DVVF  S G V++Y  EG  RWQ +   +W +
Sbjct:  356 IVAHLQEGIEVVHLFTGRTLCKLLLP----GPGLHADINGDGVLDHVQA------HGW-HPHNSDTGG--------------ERIPRCWATATSGVPVKEQLFNGSICRSA--VTGLGSEHAQYSSRRNQDRDQETFSPLETALPALLPRHDSYLPHASAAAWDHSEN---SGTLHLRRGAAHDVVFLNSRGEVTAYGPEGGKRWQVQAHTSWQR 540
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: C1E2I0_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E2I0_MICCC)

HSP 1 Score: 89.4 bits (220), Expect = 2.870e-15
Identity = 72/235 (30.64%), Postives = 98/235 (41.70%), Query Frame = 1 
Query:  487 VLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDVEVGTTPPAVLQRVPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSYDDEGRLRWQDRRGPTWAKPEDSEDTPDSIGGYIVPFALEIGRPS 1191
            ++A    G+E + L +GK L  +A+P      G+  D+NGDGVVDHVQA GS G    GH               P  G + +  P C+A A SG+P RE LF GS+C  +  +        K         +R V++    PA L+R          R                  DVVF  S G V+ Y  +G  RWQ R   +WA P D       +   +  F L +G  S
Sbjct:  558 IVAHQEGGVEVIHLYSGKTLCKMAMPPG----GLHADINGDGVVDHVQAHGSEGVDAGGH---------------PVTGADGKPAPDCWAQATSGVPVREHLFGGSVCRGSAGVVRHGSGHFKGEPGGGYVSNRAVQI--VAPAQLRRGEEKIVRSLRRAV---------------KDVVFLNSRGEVTCYGHDGTRRWQQRTDASWA-PGDP-----GVVASLASFPLRVGGAS 750
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A2Z7BFW1_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BFW1_9LAMI)

HSP 1 Score: 88.6 bits (218), Expect = 3.920e-15
Identity = 74/243 (30.45%), Postives = 106/243 (43.62%), Query Frame = 1 
Query:  475 VVRAVLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGA-LFDFQERLSKPASSRSASRSRDV-EVGTTPPAVLQRVPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSY-----DDEGRLRWQDRRGPTWAK-PEDSEDTPDSIGGYIVPFALEI 1179
            V   V+A  ++G+EA+ LA+G+ L  + L       G+  D+NGDGV+DHVQ VG  G +        +  G +   RP            C+A+A SG+P REQLFN S+CH +   LF   E       SRS  R+ DV  +    P ++ R                 +      +G   DVVF  + G V+SY       +    WQ   G TW+K P  S      +   + PF L +
Sbjct:  392 VPNVVVAHEKEGIEAIHLASGRTLCKLHLQEG----GLHADINGDGVLDHVQVVGGNGAE------QSVVSGSMEVLRP------------CWAVATSGVPVREQLFNASICHHSPFNLFQHGEF------SRSYGRNSDVTSLDVATPILIPR-----------------SDGHRHRMGSHGDVVFLTNRGEVTSYAPGLHGHDANWNWQRLTGATWSKLPSPSGMMESDVVPTLKPFPLRM 589
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BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A8J9RT46_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RT46_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.690e-14
Identity = 71/211 (33.65%), Postives = 95/211 (45.02%), Query Frame = 1 
Query:  487 VLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRD---VEVGTTPPAVLQRVPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSYDDEGRLRWQDRRGPTWA 1110
            ++A   +G+EAV L +G+ L  + LP+     G+  DLNGDGV+DHVQ  G  G                 D R  A GH  RH P C+A+A SG+P RE LFN ++C        F  +    AS+R+ S   D   V +   PPA L  VP                G R          VF  S G V++Y+  G+  WQ   G +WA
Sbjct:  419 LVAHLEEGIEAVHLYSGRTLCKLHLPSP----GLHADLNGDGVLDHVQVAGGHGSP---------------DARGDAPGH--RHTPGCWAVAKSGIPPREPLFNATICR-------FPGQWGAEASARAFSFGSDGGVVPLEVAPPAFLP-VP----------------GPRGLYQQGHGIAVFLNSRGEVTAYNSHGQRLWQHAMGLSWA 584
[Close]
BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Match: A0A0K9QHC1_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QHC1_SPIOL)

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-14
Identity = 74/238 (31.09%), Postives = 104/238 (43.70%), Query Frame = 1 
Query:  475 VVRAVLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDLNGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPCYALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRD---VEVGTTPPAVLQRVPAAAAAXXXRXXXXXGAGARSAGLGPRSDVVFAVSSGVVSSYDD-----EGRLRWQDRRGPTWAKPEDSEDTPDSIGGYIVP 1164
            V   V+A  ++G+EA+ LA+G+ L  + L       G+  D+NGDGV+DHVQ VG  G +        +  G +   RP            C+A+A SG+P REQLFN S+CH       FQ        SR   R++D   +EV T  P ++ R                       G G   DV+F  S G V+SY       E   +WQ + G TW+         +S  G +VP
Sbjct:  392 VPNVVVAHEKEGIEALHLASGRTLCKLHLQEG----GLHADINGDGVLDHVQVVGGNGAE------QTVVSGSMEVLRP------------CWAVATSGVPVREQLFNASICHHYSPFDLFQHA----ELSRGYGRAQDFSSLEVAT--PILIPRDDG-----------------HHHGKGSHGDVIFLTSRGEVTSYSPGEHGHEAVWQWQIKTGATWSNLPSPSGMMES--GNVVP 582
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1018.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK18_ECTSI2.560e-11954.90Aldehyde dehydrogenase, putative n=1 Tax=Ectocarpu... [more]
A0A6H5JP99_9PHAE5.540e-8148.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B999_9STRA8.680e-2233.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U3ESI5_9CHLO5.590e-1935.41Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A5P1F657_ASPOF4.930e-1736.10Uncharacterized protein n=2 Tax=Asparagus officina... [more]
A0A7R9XN42_9CHLO5.000e-1633.49Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
C1E2I0_MICCC2.870e-1530.64Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A2Z7BFW1_9LAMI3.920e-1530.45Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A8J9RT46_9CHLO1.690e-1433.65Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A0K9QHC1_SPIOL2.200e-1431.09Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1018contigL-elsbetiae_contig1018:23593..29410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.0
Seed ortholog evalue2.9e-102
Seed eggNOG ortholog2880.D8LK18
Hectar predicted targeting categoryother localisation
EggNOG OGs28H9E@1,2QPN1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1287
Cds size1287
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.7423844-CDS-L-elsbetiae_contig1018:23592..237211622815248.7423844-CDS-L-elsbetiae_contig1018:23592..23721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 23593..23721 +
1691682794.8965635-CDS-L-elsbetiae_contig1018:23592..237211691682794.8965635-CDS-L-elsbetiae_contig1018:23592..23721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 23593..23721 +
1622815248.752-CDS-L-elsbetiae_contig1018:24550..248431622815248.752-CDS-L-elsbetiae_contig1018:24550..24843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 24551..24843 +
1691682794.9092531-CDS-L-elsbetiae_contig1018:24550..248431691682794.9092531-CDS-L-elsbetiae_contig1018:24550..24843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 24551..24843 +
1622815248.7614655-CDS-L-elsbetiae_contig1018:25064..252721622815248.7614655-CDS-L-elsbetiae_contig1018:25064..25272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 25065..25272 +
1691682794.9182825-CDS-L-elsbetiae_contig1018:25064..252721691682794.9182825-CDS-L-elsbetiae_contig1018:25064..25272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 25065..25272 +
1622815248.774841-CDS-L-elsbetiae_contig1018:25949..260391622815248.774841-CDS-L-elsbetiae_contig1018:25949..26039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 25950..26039 +
1691682794.932658-CDS-L-elsbetiae_contig1018:25949..260391691682794.932658-CDS-L-elsbetiae_contig1018:25949..26039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 25950..26039 +
1622815248.7843854-CDS-L-elsbetiae_contig1018:26289..264091622815248.7843854-CDS-L-elsbetiae_contig1018:26289..26409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 26290..26409 +
1691682794.9444747-CDS-L-elsbetiae_contig1018:26289..264091691682794.9444747-CDS-L-elsbetiae_contig1018:26289..26409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 26290..26409 +
1622815248.796388-CDS-L-elsbetiae_contig1018:27112..273891622815248.796388-CDS-L-elsbetiae_contig1018:27112..27389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 27113..27389 +
1691682794.9549017-CDS-L-elsbetiae_contig1018:27112..273891691682794.9549017-CDS-L-elsbetiae_contig1018:27112..27389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 27113..27389 +
1622815248.8110704-CDS-L-elsbetiae_contig1018:29240..294101622815248.8110704-CDS-L-elsbetiae_contig1018:29240..29410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 29241..29410 +
1691682794.9659688-CDS-L-elsbetiae_contig1018:29240..294101691682794.9659688-CDS-L-elsbetiae_contig1018:29240..29410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 29241..29410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1018.229.1prot_L-elsbetiae_contig1018.229.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1018 23593..29410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1018.229.1

>prot_L-elsbetiae_contig1018.229.1 ID=prot_L-elsbetiae_contig1018.229.1|Name=mRNA_L-elsbetiae_contig1018.229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=429bp
FSRAGKGHDPSGAAAGAGAVDPLDVHVEPFAKGEEDSRDGVQEAEMSKEE
SVRRAAEHFSLFALDGDSGALRWRHDGGAHHHHHYHADAAAAGRDGRGGG
HDPDYPGLGGGDLFRRDERSGAAFESLAAAAGAAGRGGGRRWGGGARCGG
GGGGGGGGVVRAVLARTRDGLEAVELATGKPLSAVALPAARSGAGVFVDL
NGDGVVDHVQAVGSRGGQGWGHLHSGLAMGHLSDQRPPAQGHEARHLPPC
YALAVSGLPAREQLFNGSLCHDAGALFDFQERLSKPASSRSASRSRDVEV
GTTPPAVLQRVPAAAAAAAGRSGGGRGAGARSAGLGPRSDVVFAVSSGVV
SSYDDEGRLRWQDRRGPTWAKPEDSEDTPDSIGGYIVPFALEIGRPSRGG
GGGPAGDGGGLTPPHRAEERVLVVGQVRM
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mRNA from alignment at L-elsbetiae_contig1018:23593..29410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1018.229.1 ID=mRNA_L-elsbetiae_contig1018.229.1|Name=mRNA_L-elsbetiae_contig1018.229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5818bp|location=Sequence derived from alignment at L-elsbetiae_contig1018:23593..29410+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTCGCGGGCCGGGAAGGGTCACGATCCGAGCGGCGCTGCGGCGGGGGC
CGGGGCGGTGGATCCCCTCGACGTTCACGTCGAGCCGTTCGCGAAAGGGG
AGGAGGATAGCCGCGATGGCGTCCAAGAGGTGCGTTGTCTTCGTTGATCG
ACCCCCCGGGAGCGAGGGGGGGGGGGGGGCATGAGAGGGACGAGAACAGA
CAGTATCCATGAGCGAAACGGTCGGGGGCCGCATTTCTAGGGCACCTACA
TTATGTGTACGCTTGTATGCCCACACTCTGCCTGTCTGTTTCCAGTAGAT
TCCAACCATTGCGTTGACGAACTCGGGGGGTACGCGTGGAAGAAGCTCAA
CCAGCCCATGTGCTAAGCGAGGTCCAACACAGCTGATACAATACATACAC
ACAGCAGCAACAGCAGTACCACCCCCCCCCCCCCCCGCCTCTTTTTTTAT
TGCTTCCCCCTGGTGGTGCGGGACCGGAAAAAGATAGCAAAACAAGCTTT
TTTAACAAATCANNNNNNNNNNGCGAACGGGGGCCCAACACCGCTCAAAC
AAACTTTTCACACTAAAGACACGGCGGCCCCCCCCCCCCCCCCCCCCAGC
TGTTTTCTTATGGGTTCCCGCTGTCGGTGCGGGACACGCAATATATGCCA
AAGATACGGTTTCTACACCATATGAGGCATGCCGGTGACGGAACGAAGAC
GCCACATCGACCTTTTGGCGGCCCCGGCTTTGTGTGTGTGTGTGAGGGGG
GGGGGTGGCGGCTGTGTTGGAGAGATGTCTGAGCCTGCATTGGTTGTCAC
CGCGTACGTACCGCCTGTTTGCCTGCGCGTCCCGCGGTTTTGGCTGACTT
TCAAAGTTTTTTTTTTTGTTTAACGTGCCTGGGATATAATCGCCTTCGCC
ACGTTTGTGCCTGCGACCACCGTCGTGGTGGTGGTGGTTTTGCACCGAAA
AACGGCAGGCGGAGATGAGCAAGGAGGAGAGCGTCAGGAGAGCGGCGGAG
CATTTCTCGCTCTTTGCGCTCGACGGAGACTCGGGGGCGCTGCGCTGGCG
ACATGACGGCGGCGCTCACCACCACCACCACTACCACGCCGACGCCGCCG
CCGCCGGCCGAGACGGCCGGGGCGGCGGCCACGACCCCGACTACCCGGGC
CTCGGCGGCGGCGACCTGTTCCGCCGGGACGAGAGATCGGGCGCCGCCTT
CGAGAGCCTCGCCGCCGCCGCCGGGGCGGCCGGCCGCGGGGGCGGGCGGA
GGTACCGGCGGTCTCTCCTCCGCCACCTGCCCCACGCGTGGTCGGCCCCG
TCCGACACGCGGCTCGAGATCACGGCGCTCCGCCGAAAAGGCCCCGGCGA
CGGTAGTCACACCGGCGGCGCCGGCGGCGCCGCCGTTAGCGGGGAAGAGG
GGGGCAGCCGTTCTTCCCCTGGGTGGCGACGGTCTCTTTTCCCTGCAGCA
GCAGCGGCCTCTGGGAGCAGAGGTGGGGCGGGGGGGCACGGTGCGGCGGC
GGCGGCGGGGGGGGGGGGGGGGGCGTGGTGAGGGCCGTCCTCGCGAGGAC
CAGGGACGGGCTTGAGGCGGTGGAGCTGGCGACGGGGAAGCCGCTGAGCG
CGGTGGCGCTGCCGGCCGCGAGGTCGGGCGCCGGTGTGTTCGTGGACCTG
AATGGCGACGGTGTCGTGGACCACGTTCAGGTGAGTGACGGACAGGGAGG
TCGGGTTTGGTGCATAGCATGGCATGGCATGGCATGGGTGTTTTCGGTGC
GTCCCATGGCGTGGAGTGTGGGATTTGATGGTGGTATCGTGAGGCAACGA
GATGAGAGAAGAAGGGGGGAGGGCGGGGGGGGGGCGGCAGAGAGGACGAG
AGAGAGGACGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGCA
GCAGCAGCAAGAACGGGGGTGTTGATCGCACACCTTGTGCTGTCATGATT
TCGTGGTGTTAATACTCGGCACCCTTCTATTGTACGGGGATCGGGATTTT
GTGGGATTCCCTGAACTGGTCTGCATCATCTCGCGTGCTTCTCTAGTCTG
CCACTGGCCGCCTCTGTACCTTGGTGCCTTTCATGGCTCTCTCATGGCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTCTAAAAAT
AAACAATGAATCAAAGATGGAACCTACCCCACGCTAGAGCAATGACTCGA
TATGGGGTTCAAACGGTATTCCATCTCTCTCTTCTCTCTCTCTCTCTCTC
TTCTCCCTCTCTCTTCCTCTCCGGTTGCTAAATGTCACGGTGTGGGCGGC
GGGCTGGCCTCGTCTTGCCACCTTTCTGTCGCGCGACATCGATTTCTTCT
TTGCCAGGCGGTGGGTTCGCGCGGCGGGCAAGGGTGGGGGCACCTTCATT
CGGGTCTGGCTATGGGCCATCTGTCGGACCAACGCCCCCCTGCTCAGGTT
AGTTTGTTGTTTTGGGGTGGATACATAGCTCGTTACACAGCTCGCCTGCA
ACGCCCTGTTGCTAAACAGCAGAGGCTTGGATGTGCTTCATATTTGAGTG
CTCCGAAGTGCATGTATAAAATAATTGAAACTGGATCGTATATAACTCTC
CCCTCCCTCTCTCTCTCTCGACTCCCCTCCTCCCCTTCACTCGTTCGTGT
GCGTGCCCCCTGGCTTCCTTGCTCTCGGGCTTGGTGCGCGAGTAAAGGGG
CATGAGGCGCGACACCTGCCCCCGTGTTACGCCCTCGCAGTCAGCGGCCT
CCCTGCTCGAGAGCAGCTCTTCAACGGTTCGCTCTGCCACGATGCCGGCG
CTCTCTTCGACTTTCAGGTGTGCTATGTACTACTAACTGTGGTGTGCACC
ATGTGCTGCCGGCGGCTTTTAAGTACGACAGCGAAGAGGATTTTCTTGGA
AGCGATGAAATGTAATCGTTTCTCTTTCGTCGTGTGGAGTGGTTGGAAGG
CCTGCGTGTTTCTTGTGCCGTGATTGGAGGAAACGTATTTTGGTCGGTAG
CCCCCCCCTCCCCCCTCCCCCTTCTCCTCTCGACACAGCATTCTCTGTGC
CCCCACCCCCGTCCCTAGAGCGCAGGCACCGCTCGAGTGTGTTGGCGGAT
GTGTCTCTGCTTCGGGAGCCAGGGATCGAACGAACGGTGCTCCTGCTGTC
TCGAAAAAGGGGCTGCTAGTTTGTACTGCTACAAGCAATCTGATTGGTCA
AAATCGCACGCTGACCAAGCCAAGAAAGGCGCACCACCCGACCCGAGTAT
GTATGCATGCCCCCCCCCCCCGCCGCCCCCGCCCCCCCCCCCCCCCCCCC
CCCCCCGCCACACCCCGCGTGAGCGGGGCGGGGCGTTGGGTTCGGTCGTC
GGCGGGGGGCNNNNNNNNNNCCAACAGCGCACGCTGACCGAACCAAGAAC
GGCGCTCCCCCCCACCCGAGTATGTATGCATGCCCCCCCCCCCCGCCGCC
CCCGCCCCCCCCTCAATCCATTCGATAACTCACTCCTCATGGTGGCGACA
ACGAAAACAATCATATCCAGGAACGCCTCAGCAAGCCGGCCTCATCTCGA
TCAGCCTCCCGGTCCCGTGACGTCGAGGTGGGCACGACACCCCCAGCCGT
CCTCCAGAGAGTTCCGGCGGCGGCGGCGGCGGCAGCGGGGCGCTCGGGCG
GGGGCAGGGGAGCGGGGGCGCGAAGCGCCGGGCTTGGTCCCCGCTCGGAC
GTGGTGTTTGCCGTGAGCAGCGGGGTCGTGAGCAGCTACGACGATGAGGG
ACGGCTGAGGTGGCAGGACCGCCGCGGGCCCACGTGGGCAAAACCTGGTC
AGTCTACCGTAGGTGACACAATATACCACACCCCCTGGACCGACTTTTAG
AGCTCCATTACTAGTAGCAAAGGTCGTGAGTTCGAATGAATCCCTGTCGG
GGTGAAAAATTTGCAAATTTGCAGTTGAAAGCGAATAAAGCTGAAAAGCT
CCTGAGTAAGCAAACTTCGACTTACTTCACCGTTGACGAGGGAAGGAACA
GCGGTACCCATCTCGCGATAAAACCCAAGGCAAGAACCGCAGGAGGAAGG
TGGGGCAAAAAACAGAAAATAAAAAATAGAAAAGAAGGAAAAAGCCCCAG
TGTTTACCCCCCTCCTGTGTGAACCCGGCGGATACATCATGCTGTATAAA
GAAGCAGCACCGCAACGTGCATGTTGTACACACACCGAAACGTGTAGCAG
GCGCCCGAAATAAATGGGACGAAAACACAACCCACACATTACTCCGTAAC
CAAGAGGGTGCCACCAGCACCAAACGACACATTTATTTTCGGACAGCGCT
CGACCAGATCTTTCCAACGCCGTCACCCCCTTTCGGCACAGGTACTCTTC
TTTTTGGGAAGGAATCGAGCTTTGAAAACCTTGTCCAAGGGGTGTGGTAC
CTTGTGTCACCTACGGTAGTCCGGTGGAATCCGGTCCAATCCAGTCAGCC
AGATAGCCCGACGGGTGGTTTTTCGTTTTGAGAAGATAAAAACCAGATAT
AAAGAACCAAACAAACGGAACCTATTGTAGCCGACATCGCTTTCTTTTTT
TCTCTCTTGCTTCTTAATGAATCAAAGATGGAACCTCCTACCCCACACTT
AGAGCAAGGACTCGATATGGGGTTCAAACGGTATTCCATACAGTTAGTGA
CGTAATATTTGGCGAAGCGAGCAGAAAAACAAACCTAAAATATCAGAAGA
GTTCAACATCTCCCCTGCAAAGATTTAAAAAGATTTGCGCGGGGCCGCGA
GTTTTATCGCTGGCATTTTGGCTGATTGCTCTTCTTCAAGGTTATCTTTC
TTCCGCACGTTTTTTGGAGTCGGTTCGGGTGCTCTCGGCTGGGTTGTTGG
ATGGGTTTGTGTGTTGTTGTTGTTGTTGTTGTTTCTCACATTAGCTCTCT
AGTCCAAAACATCCTTGGGGGCCCGTGGTCACAAAACAAGGCACACTCGA
CGCCGCGGAAGAAAAATAAAACAAAATTATGGTACATATGCGCCCGGTGG
TACTAAACTGGACCCCCGGGGGGGTCTTGCGTCTCGCCAGCACAAAATCA
AAGGTATAGTACATACTACTCGGAGGAGAAAATAAAAGAAAGTTCGAAAA
AGCAAAAACCAAATAAATACCAAATACCACGCCAGGGGAGGAAAGAGAGC
TACAGACAGCCGAAGGCTTCCCACACCAAAAAGAGGCAGGAAAAAGGCCG
GGAGGCGGAGGTCCGCGAGTGTGTTGCGGGGAGCCGCGTGTTTCCGTGTG
TTTTGTTGTCTTGATTGTCGCTTGCAGAGCCAGTCAGGCTCGATGCCCCC
CCCTGTTCTGGTGCGAGTATTAAGCGTTCCATGCCCTCCTTCCGCGGCCC
GTGGGTTGTCTCTTTTTCTGTGTCGTGGTGCTTGTGTGCCCCTCCCGACC
GGGCGGTCCAGCTTCGGCGAAAGCATCGCGCAACTGCTGTATGTAGCGGT
GTTTTCCGCATGCTTTTCACCAGTACTCTATAAGACGCTCCCCCTCCATT
TTGTACCCTGAAAAGAGTGCCATTCTCGTCTCAACAATGAGTTAATTCAA
CGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGCCGCTGCTGCTGTCA
CTGGTGCATTTTTTTCGGTGACGTCCTTGTCTGCGGCGGTCCCGAAAGAA
GATTCCGAAGATACCCCTGACTCCATCGGGGGCTACATCGTCCCCTTCGC
CCTGGAGATCGGCAGGCCAAGTCGCGGTGGAGGCGGGGGCCCAGCAGGGG
ATGGCGGGGGGTTGACCCCCCCCCACCGCGCCGAGGAGCGGGTACTGGTT
GTGGGGCAGGTAAGGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1018:23593..29410+

>mRNA_L-elsbetiae_contig1018.229.1 ID=mRNA_L-elsbetiae_contig1018.229.1|Name=mRNA_L-elsbetiae_contig1018.229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2574bp|location=Sequence derived from alignment at L-elsbetiae_contig1018:23593..29410+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTCGCGGGCCGGGAAGGGTCACGATCCGAGCGGCGCTGCGGCGGGGGC
CGGGGCGGTGGATCCCCTCGACGTTCACGTCGAGCCGTTCGCGAAAGGGG
AGGAGGATAGCCGCGATGGCGTCCAAGAGTTTTCGCGGGCCGGGAAGGGT
CACGATCCGAGCGGCGCTGCGGCGGGGGCCGGGGCGGTGGATCCCCTCGA
CGTTCACGTCGAGCCGTTCGCGAAAGGGGAGGAGGATAGCCGCGATGGCG
TCCAAGAGGCGGAGATGAGCAAGGAGGAGAGCGTCAGGAGAGCGGCGGAG
CATTTCTCGCTCTTTGCGCTCGACGGAGACTCGGGGGCGCTGCGCTGGCG
ACATGACGGCGGCGCTCACCACCACCACCACTACCACGCCGACGCCGCCG
CCGCCGGCCGAGACGGCCGGGGCGGCGGCCACGACCCCGACTACCCGGGC
CTCGGCGGCGGCGACCTGTTCCGCCGGGACGAGAGATCGGGCGCCGCCTT
CGAGAGCCTCGCCGCCGCCGCCGGGGCGGCCGGCCGCGGGGGCGGGCGGA
GGCGGAGATGAGCAAGGAGGAGAGCGTCAGGAGAGCGGCGGAGCATTTCT
CGCTCTTTGCGCTCGACGGAGACTCGGGGGCGCTGCGCTGGCGACATGAC
GGCGGCGCTCACCACCACCACCACTACCACGCCGACGCCGCCGCCGCCGG
CCGAGACGGCCGGGGCGGCGGCCACGACCCCGACTACCCGGGCCTCGGCG
GCGGCGACCTGTTCCGCCGGGACGAGAGATCGGGCGCCGCCTTCGAGAGC
CTCGCCGCCGCCGCCGGGGCGGCCGGCCGCGGGGGCGGGCGGAGGTGGGG
CGGGGGGGCACGGTGCGGCGGCGGCGGCGGGGGGGGGGGGGGGGGCGTGG
TGAGGGCCGTCCTCGCGAGGACCAGGGACGGGCTTGAGGCGGTGGAGCTG
GCGACGGGGAAGCCGCTGAGCGCGGTGGCGCTGCCGGCCGCGAGGTCGGG
CGCCGGTGTGTTCGTGGACCTGAATGGCGACGGTGTCGTGGACCACGTTC
AGGTGGGGCGGGGGGGCACGGTGCGGCGGCGGCGGCGGGGGGGGGGGGGG
GGGCGTGGTGAGGGCCGTCCTCGCGAGGACCAGGGACGGGCTTGAGGCGG
TGGAGCTGGCGACGGGGAAGCCGCTGAGCGCGGTGGCGCTGCCGGCCGCG
AGGTCGGGCGCCGGTGTGTTCGTGGACCTGAATGGCGACGGTGTCGTGGA
CCACGTTCAGGCGGTGGGTTCGCGCGGCGGGCAAGGGTGGGGGCACCTTC
ATTCGGGTCTGGCTATGGGCCATCTGTCGGACCAACGCCCCCCTGCTCAG
GCGGTGGGTTCGCGCGGCGGGCAAGGGTGGGGGCACCTTCATTCGGGTCT
GGCTATGGGCCATCTGTCGGACCAACGCCCCCCTGCTCAGGGGCATGAGG
CGCGACACCTGCCCCCGTGTTACGCCCTCGCAGTCAGCGGCCTCCCTGCT
CGAGAGCAGCTCTTCAACGGTTCGCTCTGCCACGATGCCGGCGCTCTCTT
CGACTTTCAGGGGCATGAGGCGCGACACCTGCCCCCGTGTTACGCCCTCG
CAGTCAGCGGCCTCCCTGCTCGAGAGCAGCTCTTCAACGGTTCGCTCTGC
CACGATGCCGGCGCTCTCTTCGACTTTCAGGAACGCCTCAGCAAGCCGGC
CTCATCTCGATCAGCCTCCCGGTCCCGTGACGTCGAGGTGGGCACGACAC
CCCCAGCCGTCCTCCAGAGAGTTCCGGCGGCGGCGGCGGCGGCAGCGGGG
CGCTCGGGCGGGGGCAGGGGAGCGGGGGCGCGAAGCGCCGGGCTTGGTCC
CCGCTCGGACGTGGTGTTTGCCGTGAGCAGCGGGGTCGTGAGCAGCTACG
ACGATGAGGGACGGCTGAGGTGGCAGGACCGCCGCGGGCCCACGTGGGCA
AAACCTGGAACGCCTCAGCAAGCCGGCCTCATCTCGATCAGCCTCCCGGT
CCCGTGACGTCGAGGTGGGCACGACACCCCCAGCCGTCCTCCAGAGAGTT
CCGGCGGCGGCGGCGGCGGCAGCGGGGCGCTCGGGCGGGGGCAGGGGAGC
GGGGGCGCGAAGCGCCGGGCTTGGTCCCCGCTCGGACGTGGTGTTTGCCG
TGAGCAGCGGGGTCGTGAGCAGCTACGACGATGAGGGACGGCTGAGGTGG
CAGGACCGCCGCGGGCCCACGTGGGCAAAACCTGAAGATTCCGAAGATAC
CCCTGACTCCATCGGGGGCTACATCGTCCCCTTCGCCCTGGAGATCGGCA
GGCCAAGTCGCGGTGGAGGCGGGGGCCCAGCAGGGGATGGCGGGGGGTTG
ACCCCCCCCCACCGCGCCGAGGAGCGGGTACTGGTTGTGGGGCAGGTAAG
GATGAAGATTCCGAAGATACCCCTGACTCCATCGGGGGCTACATCGTCCC
CTTCGCCCTGGAGATCGGCAGGCCAAGTCGCGGTGGAGGCGGGGGCCCAG
CAGGGGATGGCGGGGGGTTGACCCCCCCCCACCGCGCCGAGGAGCGGGTA
CTGGTTGTGGGGCAGGTAAGGATG
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