mRNA_L-elsbetiae_contig1018.228.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1018.228.1
Unique NamemRNA_L-elsbetiae_contig1018.228.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.580e-27
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQA+QKRTTLTVAHRLTTIRNSDKIAV
Sbjct: 1103 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAV 1168
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.660e-26
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARAIL NPPILLLDEATSALDNESEKVVQEALDQLQA+QKRTTLTVAHRLTTIRNSDKIAV
Sbjct: 1192 QRIAIARAILRNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAV 1257
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A6H5JWI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.310e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:   19 RAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            RAIL NPPILLLDEATSALDNESEKVVQEALDQLQA+QKRTTLTVAHRLTTIRNSDKIAV
Sbjct:  308 RAILRNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAV 367
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.460e-20
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARAIL NP ILLLDEATSALDNESE+ VQ ALD LQ+ Q+RTTL VAHRLTTIRN+DKIAV
Sbjct: 1120 QRIAIARAILRNPNILLLDEATSALDNESERQVQAALDHLQSLQRRTTLVVAHRLTTIRNADKIAV 1185
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.510e-20
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARAIL NP ILLLDEATSALDNESE+ VQ ALD+L+A QKRTTL VAHRL+TIRN+DKIAV
Sbjct: 1444 QRIAIARAILKNPAILLLDEATSALDNESERQVQAALDRLRALQKRTTLVVAHRLSTIRNADKIAV 1509
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.610e-20
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARAIL NP I+LLDEATSALDNESE+ VQ ALD+LQ+ Q+RTTL VAHRLTTIRN+DKIAV
Sbjct: 1264 QRIAIARAILRNPNIVLLDEATSALDNESERQVQAALDRLQSLQRRTTLVVAHRLTTIRNADKIAV 1329
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A7S2SGJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGJ5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.790e-20
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIAR ++ NP ILLLDEATSALD+ESE VVQEALDQL A  KRTT+ +AHRLTTIRN+D I V
Sbjct:   30 QRIAIARVLVGNPKILLLDEATSALDSESELVVQEALDQLLATDKRTTIIIAHRLTTIRNADAIFV 95
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A7S1CBQ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBQ7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.500e-20
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARAIL NP ILLLDEATSALDNESEKVVQEALD+L   QKRTT+ +AHRLTT+R++DK+ V
Sbjct:  606 QRIAIARAILRNPSILLLDEATSALDNESEKVVQEALDRLVKGQKRTTIVIAHRLTTVRDADKLVV 671
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BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A0G4H968_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H968_9ALVE)

HSP 1 Score: 95.9 bits (237), Expect = 8.590e-20
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARA++ +PPILLLDEATSALDNESE++VQEALD+L   +KRTT+ +AHRLTTIRN+DKI V
Sbjct:  580 QRIAIARAMIRDPPILLLDEATSALDNESERIVQEALDRLLQMKKRTTIVIAHRLTTIRNADKIVV 645
[Close]
BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Match: A0A7S1G7G2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7G2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.770e-20
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLTVAHRLTTIRNSDKIAV 198
            QRIAIARAIL NP ILLLDEATSALDNESEKVVQEALD+L   QKRTT+ +AHRLTT+R++DK+ V
Sbjct: 1266 QRIAIARAILRNPSILLLDEATSALDNESEKVVQEALDRLVKGQKRTTIVIAHRLTTVRDADKLVV 1331
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1018.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHL4_ECTSI2.580e-2798.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHL1_ECTSI1.660e-2696.97ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]
A0A6H5JWI0_9PHAE1.310e-2396.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGZ9_9STRA2.460e-2083.33ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A836CNL1_9STRA2.510e-2083.33P-loop containing nucleoside triphosphate hydrolas... [more]
A0A835Z4J1_9STRA4.610e-2081.82ATP-binding cassette, sub-family B, member 1A n=2 ... [more]
A0A7S2SGJ5_9STRA4.790e-2075.76Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1CBQ7_9STRA8.500e-2078.79Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0G4H968_9ALVE8.590e-2075.76Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S1G7G2_9STRA8.770e-2078.79Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1018contigL-elsbetiae_contig1018:19957..21342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue4.6e-25
Seed eggNOG ortholog2880.D7FHL4
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Exons4
Model size520
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1018.228.1prot_L-elsbetiae_contig1018.228.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1018 20159..21342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.5487716-UTR-L-elsbetiae_contig1018:19956..201581622815248.5487716-UTR-L-elsbetiae_contig1018:19956..20158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1018 19957..20158 -
1691682794.8422322-UTR-L-elsbetiae_contig1018:19956..201581691682794.8422322-UTR-L-elsbetiae_contig1018:19956..20158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1018 19957..20158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.5604703-CDS-L-elsbetiae_contig1018:20158..202291622815248.5604703-CDS-L-elsbetiae_contig1018:20158..20229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 20159..20229 -
1691682794.8536234-CDS-L-elsbetiae_contig1018:20158..202291691682794.8536234-CDS-L-elsbetiae_contig1018:20158..20229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 20159..20229 -
1622815248.5725257-CDS-L-elsbetiae_contig1018:20800..208501622815248.5725257-CDS-L-elsbetiae_contig1018:20800..20850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 20801..20850 -
1691682794.8623195-CDS-L-elsbetiae_contig1018:20800..208501691682794.8623195-CDS-L-elsbetiae_contig1018:20800..20850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 20801..20850 -
1622815248.5854204-CDS-L-elsbetiae_contig1018:20872..209731622815248.5854204-CDS-L-elsbetiae_contig1018:20872..20973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 20873..20973 -
1691682794.8740416-CDS-L-elsbetiae_contig1018:20872..209731691682794.8740416-CDS-L-elsbetiae_contig1018:20872..20973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 20873..20973 -
1622815248.7136953-CDS-L-elsbetiae_contig1018:21246..213421622815248.7136953-CDS-L-elsbetiae_contig1018:21246..21342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 21247..21342 -
1691682794.8850708-CDS-L-elsbetiae_contig1018:21246..213421691682794.8850708-CDS-L-elsbetiae_contig1018:21246..21342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1018 21247..21342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1018.228.1

>prot_L-elsbetiae_contig1018.228.1 ID=prot_L-elsbetiae_contig1018.228.1|Name=mRNA_L-elsbetiae_contig1018.228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
QRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAQQKRTTLT
VAHRLTTIRNSDKIAVSWARTTSSWHSRACTPRCGSNRQASSTAKNETKP
CSLGR*
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mRNA from alignment at L-elsbetiae_contig1018:19957..21342-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1018.228.1 ID=mRNA_L-elsbetiae_contig1018.228.1|Name=mRNA_L-elsbetiae_contig1018.228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig1018:19957..21342- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCATTGCTATCGCCCGCGCCATCTTGAACAATCCGCCAATTCTTCT
TCTTGACGAGGCTACGTCGGCGCTCGACAACGAGAGTGAAAAAGTGGTGA
GATTGCTTGTCCGGAACGCGGCATTGTGCACTTTAGTCGACGTCCCAGAA
ACCAGCAGGAGACGGCGCAGCCAAGTGCCCAGAGACCATAGTGCATACAT
AAATATCTACATAATTATCGAGGTACGTAAGCTTATGTGTTTTGCTCGGG
AAGCCGTCGGTACGTATGTATGTAGTGTTCGGTCAACCTTGTGTAGTTGG
TGTGTAAAGGCGTGACTCCGGACGCTAACCCGTAGCTGTTGGTGTATCAT
AATCCGTCGGTTGTTGCAGGTGCAAGAGGCCCTGGATCAACTGCAGGCGC
AGCAGAAGCGCACTACCTTGACGGTGGCGCACAGGCTGACCACCATCCGC
AACTCCGACAAGATCGCCGTGCTCAACGGGGGCGGGGTGCAGGAGCTGGG
CACGCACGACGAGCTCCTGGCACTCAAGGGCTTGTACTCCACGTGCGTGT
GCCGAGAGACGTTTATGTATCGTTCTGTGCAGCATCGAATTACACCATTT
TATGTCTCGCCTCGATGGGGGTCATTTTGACGGTAGCGAAGACCATGACT
CACGTAGGTAGATCGCACGACGCCGTCGTTGTTGAGCGTGCCTTATTGCA
TTCCATTGCAACATAAGTTCCTTCTCTTTGAGTCCTTGAAATGGCTACAC
CTGCTCGTGGGCGCTGTTGGTTCTTAAAACATTGTGCCCGGGTCCTGAAA
GATCGTCGCTGCCTCCCCCCAAAAATGCCCCTTTCGTATGTACTTTATTT
GACCTTGTTCTGTAGAATAGCTTGAGCGGCTCTTGGAGTACACTTACTGC
ACGAGCGTGCGATGCCGTACCCGACCTAGCCGTACAGGTTGCCGTGTAGC
CCGCCCGCGGTCAAGCCACGCTAGCCTCAACCAGACGCCTCGAAAACATT
GGCGCAAGCTTATGTACAACTTGCTCTCGGTGCTGCCCTTTTTTCTCTCG
TACCCGTCCCGTTGGGCCGCGGGTCGAATGCAACACGACCGACCCCCCAC
CCTCATTCAATAGGCTGTGGCTCCAACAGACAAGCAAGCTCAACGGCGAA
GAATGAGACCAAGCCCTGCTCTCTTGGCCGCTAACATTTGCGGTTCCTTC
CGTTCGCGATCTTGTCGCTGCTGGCGCTATTGGAATTTTGGTTCTTGCTG
ACGCTGCCGTGGGAGGTTGTATTTTGCGTGTGGGTCGTAGCGCTGGGCTG
CGCGGAGTTGGGTGCAGGAGGGCAGTCAGCCGTTTTCGAAAGCCGAATAC
AAAGATTTTGCGCCGCCACCGGGACGTTTAATCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1018:19957..21342-

>mRNA_L-elsbetiae_contig1018.228.1 ID=mRNA_L-elsbetiae_contig1018.228.1|Name=mRNA_L-elsbetiae_contig1018.228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1018:19957..21342- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCATTGCTATCGCCCGCGCCATCTTGAACAATCCGCCAATTCTTCT
TCTTGACGAGGCTACGTCGGCGCTCGACAACGAGAGTGAAAAAGTGCAGC
GCATTGCTATCGCCCGCGCCATCTTGAACAATCCGCCAATTCTTCTTCTT
GACGAGGCTACGTCGGCGCTCGACAACGAGAGTGAAAAAGTGGTGCAAGA
GGCCCTGGATCAACTGCAGGCGCAGCAGAAGCGCACTACCTTGACGGTGG
CGCACAGGCTGACCACCATCCGCAACTCCGACAAGATCGCCGTGTGCAAG
AGGCCCTGGATCAACTGCAGGCGCAGCAGAAGCGCACTACCTTGACGGTG
GCGCACAGGCTGACCACCATCCGCAACTCCGACAAGATCGCCGTGAGCTG
GGCACGCACGACGAGCTCCTGGCACTCAAGGGCTTGTACTCCACGAGCTG
GGCACGCACGACGAGCTCCTGGCACTCAAGGGCTTGTACTCCACGCTGTG
GCTCCAACAGACAAGCAAGCTCAACGGCGAAGAATGAGACCAAGCCCTGC
TCTCTTGGCCGCTAAGCTGTGGCTCCAACAGACAAGCAAGCTCAACGGCG
AAGAATGAGACCAAGCCCTGCTCTCTTGGCCGCTAA
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