prot_L-elsbetiae_contig1282.2266.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1282.2266.1
Unique Name	prot_L-elsbetiae_contig1282.2266.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	345

Homology

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BLAST of mRNA_L-elsbetiae_contig1282.2266.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.800e-90
Identity = 196/281 (69.75%), Postives = 210/281 (74.73%), Query Frame = 0

Query:    3 VQEEGEALPKGEHINSPT----EASFETRFEQFYLQLSEGKTGGMVACIDEMQRIVESTRQLQQQXXXXXXXXXXXXXXXXXXXXXXXXXEVYDEMLQDCRRKAGEATLDRLRKLCQRPSRPNADRDVNGDXXXXXXXXXXXXXXLMMSEEETVIVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKNLSSLRALYRLSLASGGGXXXXXXXXXXXTDRGXXXXXAAAASDPHPHITALATVLGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKAQA 279
            V +E  A P G H    +    EA+FE RFEQFYLQL+EGKTGGMVAC+DEMQRIV+STRQ +QQ               XXXXXX     VYDEMLQDCRRKAGE TLDRLRKLCQ+ SRP+A+R  +G                 + EEETV+VSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVK LSSLR LYRLSLASG  XXXXXXXXXXX    XXXXX    +DPHPHITALATVLGEGSKLMVRLAESSLGDGVMEPVAELLHKDSK QA
Sbjct:   19 VLQENPAAP-GAHAQDGSGGLLEATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQREQQLDPVKPPSAAAPPQGXXXXXXSPSAAVYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPDANRHDDGGRMGGDGGTA-------LGEEETVVVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXXXXXXXXXXXADPHPHITALATVLGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQA 291

[Close]

BLAST of mRNA_L-elsbetiae_contig1282.2266.1 vs. uniprot
Match: A0A836CHF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.150e-9
Identity = 69/181 (38.12%), Postives = 90/181 (49.72%), Query Frame = 0

Query:   90 VYDEMLQDCRRKA----------GEATLDRLRKLCQRPSRPNADRDVNGDXXXXXXXXXXXXXXLMMSEEETVIVSYHAAL-LGKAEGAANIYGGFLRNRLKQANDAAVKNLSSLRALYRLSLASGGGXXXXXXXXXXXTDRGXXXXXAAAASDPHPHITALATVLGEGSKLMVRLAESSL 259
            VY EML  CR K           GEA ++ LR+ C+      A R+        XXXXXXXXXX     +E +  + H A+ LG+ + AANI+GG+LR+R K   D A+K LS+ RALYRLS                   R       A A D HPH+TA+A VLG  +  + RL  + L
Sbjct:   10 VYAEMLDACRAKVPPPTAELTTGGEAAVEALRQQCK------AAREA----MVQXXXXXXXXXXXXXXXDEMLDATCHLAVCLGREKQAANIFGGYLRSRAKGVADRALKRLSAQRALYRLSQV-----------------RCIQACTEADAEDAHPHVTAVAAVLGTAAAQLARLRGAGL 163

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1282.2266.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1282.2266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JUH3_9PHAE	1.800e-90	69.75	Conserved oligomeric Golgi complex subunit 4 n=1 T...	[more]
A0A836CHF9_9STRA	4.150e-9	38.12	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 176..196

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1282	contig	L-elsbetiae_contig1282:2348..18104 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1282.2266.1	mRNA_L-elsbetiae_contig1282.2266.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1282 708..18158 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1282.2266.1 ID=prot_L-elsbetiae_contig1282.2266.1|Name=mRNA_L-elsbetiae_contig1282.2266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
MAVQEEGEALPKGEHINSPTEASFETRFEQFYLQLSEGKTGGMVACIDEM
QRIVESTRQLQQQRQGATATATAAAAAATAAPSPSAEAEVYDEMLQDCRR
KAGEATLDRLRKLCQRPSRPNADRDVNGDGGGGGSGMGGEGEGLMMSEEE
TVIVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKNLSSLRALYRLS
LASGGGGAGMLGGGGDATDRGEGGTAAAAASDPHPHITALATVLGEGSKL
MVRLAESSLGDGVMEPVAELLHKDSKAQASGGFWSGSSTTLTCPSGRRRF
RGGGAPPDGEGYPLLLLRRRWVPRPRSAATAAAGRRGRGGSEEE*