prot_L-elsbetiae_contig1017.220.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1017.220.1
Unique Nameprot_L-elsbetiae_contig1017.220.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length454
Homology
BLAST of mRNA_L-elsbetiae_contig1017.220.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.530e-113
Identity = 181/195 (92.82%), Postives = 189/195 (96.92%), Query Frame = 0
Query:  260 MELKHEKNKAYERMTSWTQHELSSGGYTVQGLVGARVGRLFREHVVRFSLPPRRKDNRVKGNPVRRPPMPYHRFTAGDIVAISPGKAPPTQAEMDSGSVLDGVVLQRMPHFIDVVVKIAPEGLADATPSGRVIVGGSTSTFRLDQFVNGVSYERMLQALQTATAPATLSVCPVVRGLVVDSLFPTLDRIAQVEKA 454
            MELKHEKNKAYERMTSWTQHELSSGGYTVQGLVGARVGRLFREHVVRFSLPPRR+DNR KG+PVRRPPMPYHRFTAGDIVAI+ GK+PPTQAEMDSGSVLDGVVLQRMPHFIDVVVKIAPEGLADATPSGRVIVG ST+TFRLDQFVNGVSYERMLQALQTATAP TLSVCP+VR LVVDSLFPTLDRI Q+E+A
Sbjct:    1 MELKHEKNKAYERMTSWTQHELSSGGYTVQGLVGARVGRLFREHVVRFSLPPRRRDNRSKGSPVRRPPMPYHRFTAGDIVAITRGKSPPTQAEMDSGSVLDGVVLQRMPHFIDVVVKIAPEGLADATPSGRVIVGASTATFRLDQFVNGVSYERMLQALQTATAPETLSVCPIVRSLVVDSLFPTLDRIEQMERA 195          
BLAST of mRNA_L-elsbetiae_contig1017.220.1 vs. uniprot
Match: A0A6H5L473_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L473_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 1.790e-104
Identity = 168/182 (92.31%), Postives = 174/182 (95.60%), Query Frame = 0
Query:  273 MTSWTQHELSSGGYTVQGLVGARVGRLFREHVVRFSLPPRRKDNRVKGNPVRRPPMPYHRFTAGDIVAISPGKAPPTQAEMDSGSVLDGVVLQRMPHFIDVVVKIAPEGLADATPSGRVIVGGSTSTFRLDQFVNGVSYERMLQALQTATAPATLSVCPVVRGLVVDSLFPTLDRIAQVEKA 454
            MTSWTQHELSSGGYTVQGLVGARVGRLFREHVVRFSLPPRR DNR KG+PVRRPPMPYHRFTAGDIVAI+ GK+PPTQAEMDSGSVLDGVVLQRMPHFIDVVV IAPEGLADATPSGRVIVG ST+TFRLDQFVNGVSYERMLQALQTATAP TLSVCP+VR LVVDSLFPTLDRI QV+KA
Sbjct:    1 MTSWTQHELSSGGYTVQGLVGARVGRLFREHVVRFSLPPRRGDNRSKGSPVRRPPMPYHRFTAGDIVAITRGKSPPTQAEMDSGSVLDGVVLQRMPHFIDVVVNIAPEGLADATPSGRVIVGASTATFRLDQFVNGVSYERMLQALQTATAPETLSVCPIVRSLVVDSLFPTLDRIEQVKKA 182          
BLAST of mRNA_L-elsbetiae_contig1017.220.1 vs. uniprot
Match: W7TMD0_9STRA (Regulator of nonsense n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMD0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.350e-24
Identity = 84/258 (32.56%), Postives = 129/258 (50.00%), Query Frame = 0
Query:  227 PPSTGQGRGRGAKRAVVYAGLAAYNAHFASLVVMELKHEKNKAYERMTSWTQHELSSGGYTVQGLVGARVGRLFREHVVRFSLPPRR--------------------------KDNRVKGNPV------RRPPMPYHRFTAGDIVAISPGKAPPTQAEMDSGSVLDGVVLQRMPHFIDVVVKIAPEGLA--DATPSGRVIVGGSTSTFRLDQFVNGVSYERMLQALQTATAPAT-LSVCPVVRGLVVDSLFPTLDRIA 449
            P   G GR RGAK+A  +  L++Y+ HF  L+  EL +E+ +  +R+  W +  L   G  V G+V    GRLF+E+++RF+LP RR                          + +R KG+        R PP+ YHR   GDI++I+P K  P    + S  V++G+VL+R    +DVVVK  P G+      P+G          FRLD ++N +S++RM+ A+   T   T  +V P +R ++V S     D +A
Sbjct:  149 PVQDGGGRQRGAKKAATFHALSSYSLHFLRLLEEELVYEEAEVMQRLRYWPRSRLMEEGLGVFGVVARPRGRLFKEYILRFTLPARRGGGGRRPGNAPAGALGKKGASMDTPPQTSRKKGDAEPPGPFPRAPPLAYHRLGPGDIISITPDKQNP----LGSDQVIEGLVLERGAAHVDVVVKEIPPGVVWRRGDPTGG-------ERFRLDLYLNRISFQRMVAAVHQVTGLETGYTVSPEIRDILVKSFAERFDVVA 395          
BLAST of mRNA_L-elsbetiae_contig1017.220.1 vs. uniprot
Match: A0A7R9YGU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGU8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.000e-14
Identity = 68/223 (30.49%), Postives = 108/223 (48.43%), Query Frame = 0
Query:  234 RGRGAKRAVVYAGLAAYNAHFASLVVMELKHEKNKAYERMTSWTQHELSSGGYTVQGLVGARV--GRLFREHVVRFSLPPRRKDNRVKGNPVR-------------RPP-----------------MPYHRFTAGDIVAISPGKAPPTQAEMDSGSVLDGVVLQRMPHFIDVVVKIAPEGLADATPSGRVIVGGSTSTFRLDQFVNGVSYERMLQALQTATAP 424
            R RG KR   +     Y  HF  L+  E+ +E++   +R+ +W+  +L++ G+ V  L  A++  GRLF++ VVRF  P  R+ N  +G  +              R P                 +P+HR TAGDIV +S G   P  +E  SG+ L+G V+ R  +++D+ + + P    D               FR+DQF+N V+YERM+ A+ T + P
Sbjct:  127 RSRGDKRKESHIVAMTYATHFVDLITKEMMYEEDVVNDRLLNWSPDQLATEGHAVFNL-NAQITKGRLFKDFVVRFYRP--RERNAARGGVMEGASSDIAQDEVAARGPQGQEIMSSATESSWAELLPFHRLTAGDIVMVSEGIENPLISEF-SGA-LEGTVVSRTEYYLDLAMPVPPVCRPDIQ-------------FRIDQFMNQVTYERMVLAVSTLSDP 331          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1017.220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK70_ECTSI1.530e-11392.82tRNA-splicing endonuclease positive effector n=1 T... [more]
A0A6H5L473_9PHAE1.790e-10492.31AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
W7TMD0_9STRA5.350e-2432.56Regulator of nonsense n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7R9YGU8_9STRA3.000e-1430.49Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.30.270coord: 273..405
e-value: 5.6E-8
score: 34.2
NoneNo IPR availableGENE3D3.40.50.300coord: 256..423
e-value: 5.6E-8
score: 34.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..454
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1017contigL-elsbetiae_contig1017:13653..18449 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1017.220.1mRNA_L-elsbetiae_contig1017.220.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1017 13653..18451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1017.220.1 ID=prot_L-elsbetiae_contig1017.220.1|Name=mRNA_L-elsbetiae_contig1017.220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=454bp
RPFQLAALGSLFLLGASDAVVLSRGCFGSRIQPLPGISTSCRTRVTSTTS
TTMAMGRSFSRTRSGPGKQGRSRRSGCGGTPGGADGRAGVRARARRTSYY
GDSAASSGSSRGGGEPLGFFEIGDVVWGAGRQQKRSAGTVGARRSGFGNY
QPTRTAGGTFTARASTSENLLGAPPKWDFKKVDLSLLPRGFQERSANPRV
NEGGKKRRGSLSSPSAVSTAVATDFAPPSTGQGRGRGAKRAVVYAGLAAY
NAHFASLVVMELKHEKNKAYERMTSWTQHELSSGGYTVQGLVGARVGRLF
REHVVRFSLPPRRKDNRVKGNPVRRPPMPYHRFTAGDIVAISPGKAPPTQ
AEMDSGSVLDGVVLQRMPHFIDVVVKIAPEGLADATPSGRVIVGGSTSTF
RLDQFVNGVSYERMLQALQTATAPATLSVCPVVRGLVVDSLFPTLDRIAQ
VEKA
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