mRNA_L-elsbetiae_contig1274.2200.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1274.2200.1
Unique NamemRNA_L-elsbetiae_contig1274.2200.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1274.2200.1 vs. uniprot
Match: D8LDB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB3_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.700e-49
Identity = 82/123 (66.67%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:   79 GAAFTFLAVAISVDAGFSNVKVSQFQQAGLDLSFLVSWDTAGS----PSTDSHLIDIWLETRQPDPSTFVETALHKGIENVGTLWIDTGESWAARSSWDSNISGEAAVCVYNASDLFDNACSE 435
            G A   LA A S DA FSNVK+SQFQQAGLDLSFLVSWDTA +    PS+ S LIDIWLETRQ + S+ VET L +G+EN G++W+D G+SWA RSSWD  ISGE  VCVY++ DLFDNACSE
Sbjct:   26 GVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTANTTSENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGEGIVCVYHSDDLFDNACSE 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1274.2200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDB3_ECTSI2.700e-4966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1274contigL-elsbetiae_contig1274:441..1319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815462.0785723-CDS-L-elsbetiae_contig1274:441..5821622815462.0785723-CDS-L-elsbetiae_contig1274:441..582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1274 442..582 -
1691682909.3112442-CDS-L-elsbetiae_contig1274:441..5821691682909.3112442-CDS-L-elsbetiae_contig1274:441..582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1274 442..582 -
1622815462.0982416-CDS-L-elsbetiae_contig1274:1025..13191622815462.0982416-CDS-L-elsbetiae_contig1274:1025..1319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1274 1026..1319 -
1691682909.321423-CDS-L-elsbetiae_contig1274:1025..13191691682909.321423-CDS-L-elsbetiae_contig1274:1025..1319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1274 1026..1319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1274.2200.1prot_L-elsbetiae_contig1274.2200.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1274 442..1319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1274.2200.1

>prot_L-elsbetiae_contig1274.2200.1 ID=prot_L-elsbetiae_contig1274.2200.1|Name=mRNA_L-elsbetiae_contig1274.2200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
PTPDPRFPGDYTDIYLHQIDTMLRTSGAAFTFLAVAISVDAGFSNVKVSQ
FQQAGLDLSFLVSWDTAGSPSTDSHLIDIWLETRQPDPSTFVETALHKGI
ENVGTLWIDTGESWAARSSWDSNISGEAAVCVYNASDLFDNACSE
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mRNA from alignment at L-elsbetiae_contig1274:441..1319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1274.2200.1 ID=mRNA_L-elsbetiae_contig1274.2200.1|Name=mRNA_L-elsbetiae_contig1274.2200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=879bp|location=Sequence derived from alignment at L-elsbetiae_contig1274:441..1319- (Laminarionema elsbetiae ELsaHSoW15)
CCAACACCTGACCCACGTTTTCCTGGCGATTACACAGATATCTATCTACA
TCAGATAGACACCATGCTTCGCACATCAGGTGCAGCTTTCACGTTTCTGG
CTGTCGCCATATCTGTGGATGCAGGCTTTTCGAACGTCAAGGTCTCGCAA
TTCCAGCAGGCAGGTTTGGATTTATCCTTTCTGGTATCGTGGGACACCGC
CGGAAGCCCATCCACCGATTCGCATTTAATCGACATTTGGCTCGAGACCA
GGCAGCCGGATCCCTCCACTTTCGTCGAGACTGCCCTTCACAAGGTTGGT
TGAAAGCTATTTACCCATTCAGGCTGCGTGAGTTGAGAAGATTGAGGATC
CCGTGTGTGTAGATATCTGTAGTGAGGTGCGTGAATATCATGTGATCAAA
TGTTCATTTGTAGCCACGAGAGCTTTCTCTGAAGGCATGTGGTGTTTCTT
CCCTCTGAGGATAGCTTGAAGCTCTTTACATAGTCGAGCTATGTGTCTAT
CTAGATAGATAGCTACTTGCACGAACCGGTAGATCCTCGTGATGCAGTAC
GTATGTATATATGGTGCCATTGGCACCCCCGAAGCTCACGAATCTGGATC
ATCAACAGCCGTTAAAATAGTACCTTCCGCGCACGAGACCATGACTCATG
TCGCGCGTGTGCCCGAAGGCCATCCCATCACTGCTTCCAACCAACGGAGA
CCTTTTCGAATGCCGCTTGCGCTTTGTGCTCGCAAAGGGCATTGAAAATG
TAGGTACCCTGTGGATCGACACCGGGGAATCCTGGGCAGCTCGATCATCT
TGGGACAGCAACATCAGCGGGGAAGCGGCCGTGTGCGTCTACAACGCTAG
TGATCTCTTCGACAATGCCTGCAGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1274:441..1319-

>mRNA_L-elsbetiae_contig1274.2200.1 ID=mRNA_L-elsbetiae_contig1274.2200.1|Name=mRNA_L-elsbetiae_contig1274.2200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1274:441..1319- (Laminarionema elsbetiae ELsaHSoW15)
CCAACACCTGACCCACGTTTTCCTGGCGATTACACAGATATCTATCTACA
TCAGATAGACACCATGCTTCGCACATCAGGTGCAGCTTTCACGTTTCTGG
CTGTCGCCATATCTGTGGATGCAGGCTTTTCGAACGTCAAGGTCTCGCAA
TTCCAGCAGGCAGGTTTGGATTTATCCTTTCTGGTATCGTGGGACACCGC
CGGAAGCCCATCCACCGATTCGCATTTAATCGACATTTGGCTCGAGACCA
GGCAGCCGGATCCCTCCACTTTCGTCGAGACTGCCCTTCACAAGCCAACA
CCTGACCCACGTTTTCCTGGCGATTACACAGATATCTATCTACATCAGAT
AGACACCATGCTTCGCACATCAGGTGCAGCTTTCACGTTTCTGGCTGTCG
CCATATCTGTGGATGCAGGCTTTTCGAACGTCAAGGTCTCGCAATTCCAG
CAGGCAGGTTTGGATTTATCCTTTCTGGTATCGTGGGACACCGCCGGAAG
CCCATCCACCGATTCGCATTTAATCGACATTTGGCTCGAGACCAGGCAGC
CGGATCCCTCCACTTTCGTCGAGACTGCCCTTCACAAGGGCATTGAAAAT
GTAGGTACCCTGTGGATCGACACCGGGGAATCCTGGGCAGCTCGATCATC
TTGGGACAGCAACATCAGCGGGGAAGCGGCCGTGTGCGTCTACAACGCTA
GTGATCTCTTCGACAATGCCTGCAGCGAGGGCATTGAAAATGTAGGTACC
CTGTGGATCGACACCGGGGAATCCTGGGCAGCTCGATCATCTTGGGACAG
CAACATCAGCGGGGAAGCGGCCGTGTGCGTCTACAACGCTAGTGATCTCT
TCGACAATGCCTGCAGCGAG
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