mRNA_L-elsbetiae_contig12722.2193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12722.2193.1
Unique NamemRNA_L-elsbetiae_contig12722.2193.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12722.2193.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.480e-55
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:    1 CKTRRSRFNKHCRDLGHEQKGVKKTLRFFECTNCRKRCSSTDRVPQTGCESCGRHNEWKRCGARPGRGHAEGPRDKRFVAAMSEWTDQRDLSLAAPDFR 297
            CKTRRSRFNKHC+DLGH+QKGVK TLRFFECTNCRKRCSST+RVP+TGCESCGRH+ WKRCGARPGRG AEGPRDKRFVAA+SEWTDQRDLSLAAPD R
Sbjct:  751 CKTRRSRFNKHCKDLGHDQKGVKATLRFFECTNCRKRCSSTERVPRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSEWTDQRDLSLAAPDCR 849
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BLAST of mRNA_L-elsbetiae_contig12722.2193.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.100e-46
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 CKTRRSRFNKHCRDLGHEQKGVKKTLRFFECTNCRKRCSSTDRVPQTGCESCGRHNEWKRCGARPGRGHAEGPRDKRFVAAMSEWTDQR 267
            CKTRRSRFNK CRDLGH+QKGVK TLRFFECTNCRKRCSST+RVP+TGCESCGRH+ WKRCGARPGRG AEGPRDKRFVAA+SE   +R
Sbjct:  374 CKTRRSRFNKRCRDLGHDQKGVKATLRFFECTNCRKRCSSTERVPRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSESGGER 462
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12722.2193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS36_9PHAE1.480e-5589.90Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI3.100e-4685.39Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12722contigL-elsbetiae_contig12722:4105..5292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.2e-38
Seed eggNOG ortholog2880.D8LM23
Preferred nameMCM10
KEGG koko:K10736
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG3056@1,KOG3056@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032
Exons2
Model size404
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12722.2193.1prot_L-elsbetiae_contig12722.2193.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12722 4209..5292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.3821611-UTR-L-elsbetiae_contig12722:4104..42081622815461.3821611-UTR-L-elsbetiae_contig12722:4104..4208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12722 4105..4208 -
1691682908.9378679-UTR-L-elsbetiae_contig12722:4104..42081691682908.9378679-UTR-L-elsbetiae_contig12722:4104..4208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12722 4105..4208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.3965025-CDS-L-elsbetiae_contig12722:4208..42561622815461.3965025-CDS-L-elsbetiae_contig12722:4208..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12722 4209..4256 -
1691682908.9504683-CDS-L-elsbetiae_contig12722:4208..42561691682908.9504683-CDS-L-elsbetiae_contig12722:4208..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12722 4209..4256 -
1622815461.4104512-CDS-L-elsbetiae_contig12722:5040..52921622815461.4104512-CDS-L-elsbetiae_contig12722:5040..5292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12722 5041..5292 -
1691682908.9602787-CDS-L-elsbetiae_contig12722:5040..52921691682908.9602787-CDS-L-elsbetiae_contig12722:5040..5292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12722 5041..5292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12722.2193.1

>prot_L-elsbetiae_contig12722.2193.1 ID=prot_L-elsbetiae_contig12722.2193.1|Name=mRNA_L-elsbetiae_contig12722.2193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
CKTRRSRFNKHCRDLGHEQKGVKKTLRFFECTNCRKRCSSTDRVPQTGCE
SCGRHNEWKRCGARPGRGHAEGPRDKRFVAAMSEWTDQRDLSLAAPDFR*
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mRNA from alignment at L-elsbetiae_contig12722:4105..5292-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12722.2193.1 ID=mRNA_L-elsbetiae_contig12722.2193.1|Name=mRNA_L-elsbetiae_contig12722.2193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig12722:4105..5292- (Laminarionema elsbetiae ELsaHSoW15)
TGCAAGACTCGCCGCAGTCGATTCAACAAGCACTGCAGAGACCTTGGCCA
CGAGCAGAAGGGGGTCAAGAAGACCCTCCGGTTCTTCGAGTGCACCAACT
GCAGGAAGCGGTGCTCGAGCACCGACCGCGTCCCGCAGACCGGCTGCGAG
AGCTGCGGCCGGCACAACGAGTGGAAGCGGTGCGGCGCTCGGCCCGGGAG
GGGGCACGCAGAAGGTCCGAGGGACAAGCGGTTCGTCGCCGCCATGTCCG
AGGTGAGTAGTAAACCTAGACGGTCGTTGTGGATATATAGGGTGTAACCT
AGACGATTGAGTTATCCGCGTGGGAAAAGAGGTGATGTTAGTTGTCGCAG
AATCAAGGCGGTGGGTGAGGCTGGGCGAGGAGAGAGGATCGCGGGCTGGT
TATCTGTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTATCTCTCCCCC
CTCTCTAGTAGGTACTCAGTGCGGGAATATGTCGCGTTGTGAACGATGAC
AATGTTGCAAACTCTGGTCTACCCATTCGCTCTGGGGAATAAATAGCCAC
TGGCTCGAGAGACGTACACTGCATGTACGAAATCAGAACATGAATATATG
AATATGCACAACGTGCATGCCTGTATAGGTCGGATCGCTAACAGTTCAGC
TTTATGGAGCTAAATACCCTCTAAAAACCTTACTGGGTTCCGCACCTCCG
AAACGTACCCGTTGCAATCTGGGGTTTCATACGATGTACTGTAGTAATGT
CACCATAATATGCAAAGGTTGTGCGGGGAGCTCGGAAGTACAATTAGTGA
AGACGAAACTACTTGCAATGCGGGTTTCGGGAGGGCTCCATCTTTTTTTT
GTTAGGCTGTGCGATCTGCCTGTATCGGGGGTCAACCTTCCTTGTCCAAG
CATCTACGGTGCCGTGCCTGCAGCTGGATTATGGACCAAACACGGGACCC
CTCACCCCCCCCCGCTGCGCTCCGTTCCCGCCCCGCCCGGCCCCCTCCTC
TTTCCCCTGTGGCACGAACGGACGGTGGACGAACAGTGGACGGACCAGAG
AGACCTCAGCCTGGCAGCTCCGGACTTCCGATGACGCCAGCCCACTGTTT
TGTGTTTTGTTTTTATCTCTAGACTATGGGTTTAGCGATTTTCCGGTCTT
TGCTTGCTGGCCTGGGAGGACAAGACACCCAGAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12722:4105..5292-

>mRNA_L-elsbetiae_contig12722.2193.1 ID=mRNA_L-elsbetiae_contig12722.2193.1|Name=mRNA_L-elsbetiae_contig12722.2193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig12722:4105..5292- (Laminarionema elsbetiae ELsaHSoW15)
TGCAAGACTCGCCGCAGTCGATTCAACAAGCACTGCAGAGACCTTGGCCA
CGAGCAGAAGGGGGTCAAGAAGACCCTCCGGTTCTTCGAGTGCACCAACT
GCAGGAAGCGGTGCTCGAGCACCGACCGCGTCCCGCAGACCGGCTGCGAG
AGCTGCGGCCGGCACAACGAGTGGAAGCGGTGCGGCGCTCGGCCCGGGAG
GGGGCACGCAGAAGGTCCGAGGGACAAGCGGTTCGTCGCCGCCATGTCCG
AGTGCAAGACTCGCCGCAGTCGATTCAACAAGCACTGCAGAGACCTTGGC
CACGAGCAGAAGGGGGTCAAGAAGACCCTCCGGTTCTTCGAGTGCACCAA
CTGCAGGAAGCGGTGCTCGAGCACCGACCGCGTCCCGCAGACCGGCTGCG
AGAGCTGCGGCCGGCACAACGAGTGGAAGCGGTGCGGCGCTCGGCCCGGG
AGGGGGCACGCAGAAGGTCCGAGGGACAAGCGGTTCGTCGCCGCCATGTC
CGAGTGGACGGACCAGAGAGACCTCAGCCTGGCAGCTCCGGACTTCCGAT
GATGGACGGACCAGAGAGACCTCAGCCTGGCAGCTCCGGACTTCCGATGA
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