prot_L-elsbetiae_contig12722.2193.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12722.2193.1
Unique Nameprot_L-elsbetiae_contig12722.2193.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length100
Homology
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BLAST of mRNA_L-elsbetiae_contig12722.2193.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.680e-56
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 0 
Query:    1 CKTRRSRFNKHCRDLGHEQKGVKKTLRFFECTNCRKRCSSTDRVPQTGCESCGRHNEWKRCGARPGRGHAEGPRDKRFVAAMSEWTDQRDLSLAAPDFR 99
            CKTRRSRFNKHC+DLGH+QKGVK TLRFFECTNCRKRCSST+RVP+TGCESCGRH+ WKRCGARPGRG AEGPRDKRFVAA+SEWTDQRDLSLAAPD R
Sbjct:  751 CKTRRSRFNKHCKDLGHDQKGVKATLRFFECTNCRKRCSSTERVPRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSEWTDQRDLSLAAPDCR 849
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BLAST of mRNA_L-elsbetiae_contig12722.2193.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 7.960e-47
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 0 
Query:    1 CKTRRSRFNKHCRDLGHEQKGVKKTLRFFECTNCRKRCSSTDRVPQTGCESCGRHNEWKRCGARPGRGHAEGPRDKRFVAAMSEWTDQR 89
            CKTRRSRFNK CRDLGH+QKGVK TLRFFECTNCRKRCSST+RVP+TGCESCGRH+ WKRCGARPGRG AEGPRDKRFVAA+SE   +R
Sbjct:  374 CKTRRSRFNKRCRDLGHDQKGVKATLRFFECTNCRKRCSSTERVPRTGCESCGRHDMWKRCGARPGRGPAEGPRDKRFVAALSESGGER 462
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12722.2193.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS36_9PHAE2.680e-5689.90Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI7.960e-4785.39Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015411Replication factor Mcm10, C-terminalPFAMPF09332Mcm10coord: 1..62
e-value: 2.1E-7
score: 30.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12722contigL-elsbetiae_contig12722:4209..5292 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12722.2193.1mRNA_L-elsbetiae_contig12722.2193.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12722 4105..5292 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12722.2193.1 ID=prot_L-elsbetiae_contig12722.2193.1|Name=mRNA_L-elsbetiae_contig12722.2193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
CKTRRSRFNKHCRDLGHEQKGVKKTLRFFECTNCRKRCSSTDRVPQTGCE
SCGRHNEWKRCGARPGRGHAEGPRDKRFVAAMSEWTDQRDLSLAAPDFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015411Rep_factor_Mcm10_C