mRNA_L-elsbetiae_contig12702.2171.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12702.2171.1
Unique NamemRNA_L-elsbetiae_contig12702.2171.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12702.2171.1 vs. uniprot
Match: D8LD46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD46_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 4.330e-47
Identity = 120/192 (62.50%), Postives = 134/192 (69.79%), Query Frame = 1 
Query:    1 RPSSKSGHGATLAVEVAAHEIALSATPTALSWALLSLLADGGVGVGVGADSGAGGTPGARRRGQGHLLPRSRDKYPTPGTPGVDVRRVGRRITTRWATLLDIFHARWRGFGAALLVRLVEALLGNAASPSPXXXXXXXXXXXXXPNDASRPGVAGISSXXXXXXXXXXXXXXXXX----LERQAAFIEIWVR 564
            R SS + +  T A+EVAAHEIALSATPTALSWA+++LLADGG     G   G     G   R QGHLLPRSRDKYPTPGTPGVD R+V RR++ RWATLLD+FH+RWRGFGAALLVRLVEALL N +S                P +A      G S+ XXXXXXXXXXXXXXXX    LERQAAFIEIW R
Sbjct:   63 RGSSAASNPGTAAMEVAAHEIALSATPTALSWAVVALLADGG-----GRVRGGDFVGGVGGREQGHLLPRSRDKYPTPGTPGVDSRQVSRRLSARWATLLDMFHSRWRGFGAALLVRLVEALLDNDSST---------------PGEAVNADDDGTSACXXXXXXXXXXXXXXXXXXXXLERQAAFIEIWAR 234
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BLAST of mRNA_L-elsbetiae_contig12702.2171.1 vs. uniprot
Match: A0A6H5JW11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW11_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.540e-43
Identity = 120/192 (62.50%), Postives = 132/192 (68.75%), Query Frame = 1 
Query:   37 AVEVAAHEIALSATPTALSWALLSLLADGGVGVGVGADSGAGGTPGARRRGQGHLLPRSRDKYPTPGTPGVDVRRVGRRITTRWATLLDIFHARWRGFGAALLVRLVEALLGNAASPSPXXXXXXXXXXXXXPNDASRPGVAGISSXXXXXXXXXXXXXXXXXLERQAAFIEIWVRHLLSRRWHLRGGDVSV 612
            A+EVAAHEI LSATPTALSWA++SLLADGG    V  +   GG  G + RGQGHLLPRSRDKYPTP      VR +G      WATLLD+FH+RWRGFGAALLVRLVEALL NA+S +P               +A   G +      XXXXXXXXXXXXXX LERQAAFIEIWV HLLSRRWHLR  D  V
Sbjct:  260 AMEVAAHEIVLSATPTALSWAVVSLLADGGGR--VRGEYFVGGVGGTKGRGQGHLLPRSRDKYPTP------VRGLGGGW---WATLLDMFHSRWRGFGAALLVRLVEALLDNASS-TPGAAV-----------NADENGRSACGGGNXXXXXXXXXXXXXXGLERQAAFIEIWVNHLLSRRWHLRTSDARV 428
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BLAST of mRNA_L-elsbetiae_contig12702.2171.1 vs. uniprot
Match: D7FGU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.160e-26
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    7 SSKSGHGATLAVEVAAHEIALSATPTALSWALLSLLADGGVGVGVGADSGAGGTPGARRRGQGHLLPRSRDKYPTPGTPGVDVRRVGRRITTRWATL 297
            SS +      A+EVAAHEIALSATPTALSWA+++LLADGG  VG G D   GG  G + RGQGHLLPRSRDKYPTPGTPGVD R+V RR+T R +TL
Sbjct:  235 SSAASKPGAAAMEVAAHEIALSATPTALSWAVVALLADGGGRVG-GGDC-VGGVSGTKGRGQGHLLPRSRDKYPTPGTPGVDSRQVSRRLTARCSTL 329
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12702.2171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD46_ECTSI4.330e-4762.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW11_9PHAE1.540e-4362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGU4_ECTSI1.160e-2668.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12702contigL-elsbetiae_contig12702:2890..5123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue2.8e-23
Seed eggNOG ortholog2880.D7FGU4
Preferred nameLAS1L
KEGG koko:K05956,ko:K16912
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000469,GO:0000470,GO:0000478,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0035097,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0046483,GO:0051276,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.endonucleolytic cleavage involved in rRNA processing
EggNOG OGsKOG2425@1,KOG2425@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_000410.3
EC2.5.1.60
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko03009,ko04131
Exons3
Model size612
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12702.2171.1prot_L-elsbetiae_contig12702.2171.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12702 2890..5123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815459.3552241-CDS-L-elsbetiae_contig12702:2889..32171622815459.3552241-CDS-L-elsbetiae_contig12702:2889..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 2890..3217 -
1691682908.1944666-CDS-L-elsbetiae_contig12702:2889..32171691682908.1944666-CDS-L-elsbetiae_contig12702:2889..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 2890..3217 -
1622815459.8594906-CDS-L-elsbetiae_contig12702:4113..41631622815459.8594906-CDS-L-elsbetiae_contig12702:4113..4163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 4114..4163 -
1691682908.206717-CDS-L-elsbetiae_contig12702:4113..41631691682908.206717-CDS-L-elsbetiae_contig12702:4113..4163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 4114..4163 -
1622815459.8692036-CDS-L-elsbetiae_contig12702:4889..51231622815459.8692036-CDS-L-elsbetiae_contig12702:4889..5123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 4890..5123 -
1691682908.217654-CDS-L-elsbetiae_contig12702:4889..51231691682908.217654-CDS-L-elsbetiae_contig12702:4889..5123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 4890..5123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12702.2171.1

>prot_L-elsbetiae_contig12702.2171.1 ID=prot_L-elsbetiae_contig12702.2171.1|Name=mRNA_L-elsbetiae_contig12702.2171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
RPSSKSGHGATLAVEVAAHEIALSATPTALSWALLSLLADGGVGVGVGAD
SGAGGTPGARRRGQGHLLPRSRDKYPTPGTPGVDVRRVGRRITTRWATLL
DIFHARWRGFGAALLVRLVEALLGNAASPSPPPSPPPPPPHLPPPNDASR
PGVAGISSGSGGSGGGGGGGGGGGGLERQAAFIEIWVRHLLSRRWHLRGG
DVSV
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mRNA from alignment at L-elsbetiae_contig12702:2890..5123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12702.2171.1 ID=mRNA_L-elsbetiae_contig12702.2171.1|Name=mRNA_L-elsbetiae_contig12702.2171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2234bp|location=Sequence derived from alignment at L-elsbetiae_contig12702:2890..5123- (Laminarionema elsbetiae ELsaHSoW15)
AGGCCGTCGTCGAAGTCCGGCCACGGCGCTACCCTGGCGGTGGAGGTCGC
CGCGCACGAGATTGCGTTGTCCGCGACGCCTACCGCGCTGTCCTGGGCGC
TCCTGTCCCTTCTCGCAGATGGCGGGGTGGGGGTGGGGGTGGGGGCCGAT
AGCGGCGCCGGCGGAACCCCCGGGGCCCGGAGGAGAGGGCAGGGGCACCT
GCTCCCTCGCTCAAGAGACAAGTACCCGACTCCGGTGAGAAGCGGGGGCG
GCGGTGGAGGGGGGGGGGGGGGGGGGGGGGTGGTAAAAGGGGGCCTTCCC
CGGGAGGACCNNNNNNNNNNGGGGGCCCCGGGGGGGAGGGGGGGGGGGGG
GGGGCACCCGGCGCCTCGGCAAGGGGAGAGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGAGTATGTAAA
CGGAGTCCTCTCCGATGAGCACCGGGCTCCGGTGTCGGGTTGAAAGACTT
GTTGGATTGGAGGATGTACAATGTATGTATGTATGTATGTATGTATGTAT
GTAGGCGTTGTTTTTTTGTGGGAAGATGGGTGGTGGCGTTTTTTTTAGGC
CCATCAGCGCTGTGCGTTGTCGTTCTCCGAACTGTCCTTCGTGAGTGCAC
CGTGCCCGATACCTGCATCCGCTCGTGCGCACTGAAAGGAGGCGTATGCA
TGTCTGTTGTGCCGGCGTTTTCCCTGCCTTTTGCCCATGGAATCCCGGGA
GTGGACGCCCGAGGAGTCGTTAGAACAAAAAAAATAGAACAAAATGCAAA
AATTATTGCACAAAAATAATAAATAAAAATATTAAAAATCACCTAGTTTT
AATATTTGTGTTATACGTATATACACAAAAAAATATGTACTTGTACTCCA
AAAATATACGCATGTATGTATATTTTAATGAAGTTCAATTATGTCTACTA
TTTTCATCAGGGAACCCCAGGAGTGGACGTCCGGAGAGTCGGCCGCCGAA
TAACTACCAGGTGAGCGCGGAAGCTTGTGTTGGCACGAGGCATGTGCTCT
CGGGCATCCATGTAGGTGTTGGTCGAGGTGGCGTTTTTTGGGCGATAAGA
CAAGGATGGGATGAGATAAAACAAGGATGGGATGGGATAAGACAAGGATG
GGATGAGATAAGACAAGGATGGGATGAGATAAGACAAGGATGGGATGAGA
TAAGACAAGGATGGGATGGGATAAGGCAAGGATTGGATGATATAAGACAA
GGATGGGATGGGATAAGACAAGAATGGGGTGGTATAAGGGATGGGATAAG
ACAAGAATGGGGTGGTATAAGACAAGGATGGGATGGGATAAGACAAGCAT
GGGATGAGATAAGTCAAGAATGGGGTGGGATAAGACAAGGATGGGATGGG
ATAAGACAAGGATGGGATGAGATAAGACAAGGATGGGATGAGATAAGACA
AAGGCAGTCGACAAAGCTCTACCTTGGGTTCGCTCGCACTGCTGTCTCAG
TTTTGTCTGGTGCACGAGCCACAAGCTTTGTTTTCCGTGGCAACGAAAAG
TTGTGTTTTTTCGCCTCTTTATTGTTGTTTGTTCTTGTTTGTTGACCCTC
GTATCACACGATACGATTGGGCAACGGGCATGAAAACGGGGGGCTCCGAG
ACGTGTCTGTAGACCCTGGCTGTGGGTGTGCCGCCACTTGTTGCAGGCAG
GGAGATATAACTGACGTGTATGTACATACACACGTAGCTCGCTCCAGAGT
TAAGGCTGGACCCCTCCTCTCTTATCTCCCCGTGTTCTGCTCCCTCCTTG
ACACACCCTCCACCCGCGGCCGCCTTACCCCGAAACCAACCAATCAAATT
TAAACCCGAATGGTTGGATTGGATTCGATTCGATTCGCATCTCATCGATT
TCGCAGGTGGGCCACCCTCCTGGACATATTTCACGCCCGGTGGCGGGGCT
TTGGAGCGGCGCTGCTGGTTCGTCTCGTGGAAGCGCTTCTCGGCAACGCG
GCGTCGCCGTCGCCACCACCATCACCGCCGCCGCCGCCGCCGCACCTACC
GCCGCCCAACGACGCTTCCCGGCCCGGCGTTGCTGGCATCAGTAGCGGCA
GCGGCGGCAGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGATTG
GAGCGGCAGGCCGCATTCATCGAGATCTGGGTGCGGCATCTTTTGAGTCG
TCGGTGGCATCTACGCGGCGGCGACGTGAGTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12702:2890..5123-

>mRNA_L-elsbetiae_contig12702.2171.1 ID=mRNA_L-elsbetiae_contig12702.2171.1|Name=mRNA_L-elsbetiae_contig12702.2171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig12702:2890..5123- (Laminarionema elsbetiae ELsaHSoW15)
AGGCCGTCGTCGAAGTCCGGCCACGGCGCTACCCTGGCGGTGGAGGTCGC
CGCGCACGAGATTGCGTTGTCCGCGACGCCTACCGCGCTGTCCTGGGCGC
TCCTGTCCCTTCTCGCAGATGGCGGGGTGGGGGTGGGGGTGGGGGCCGAT
AGCGGCGCCGGCGGAACCCCCGGGGCCCGGAGGAGAGGGCAGGGGCACCT
GCTCCCTCGCTCAAGAGACAAGTACCCGACTCCGAGGCCGTCGTCGAAGT
CCGGCCACGGCGCTACCCTGGCGGTGGAGGTCGCCGCGCACGAGATTGCG
TTGTCCGCGACGCCTACCGCGCTGTCCTGGGCGCTCCTGTCCCTTCTCGC
AGATGGCGGGGTGGGGGTGGGGGTGGGGGCCGATAGCGGCGCCGGCGGAA
CCCCCGGGGCCCGGAGGAGAGGGCAGGGGCACCTGCTCCCTCGCTCAAGA
GACAAGTACCCGACTCCGGGAACCCCAGGAGTGGACGTCCGGAGAGTCGG
CCGCCGAATAACTACCAGGGAACCCCAGGAGTGGACGTCCGGAGAGTCGG
CCGCCGAATAACTACCAGGTGGGCCACCCTCCTGGACATATTTCACGCCC
GGTGGCGGGGCTTTGGAGCGGCGCTGCTGGTTCGTCTCGTGGAAGCGCTT
CTCGGCAACGCGGCGTCGCCGTCGCCACCACCATCACCGCCGCCGCCGCC
GCCGCACCTACCGCCGCCCAACGACGCTTCCCGGCCCGGCGTTGCTGGCA
TCAGTAGCGGCAGCGGCGGCAGCGGCGGCGGCGGCGGCGGAGGAGGAGGA
GGAGGAGGATTGGAGCGGCAGGCCGCATTCATCGAGATCTGGGTGCGGCA
TCTTTTGAGTCGTCGGTGGCATCTACGCGGCGGCGACGTGAGTGTGGTGG
GCCACCCTCCTGGACATATTTCACGCCCGGTGGCGGGGCTTTGGAGCGGC
GCTGCTGGTTCGTCTCGTGGAAGCGCTTCTCGGCAACGCGGCGTCGCCGT
CGCCACCACCATCACCGCCGCCGCCGCCGCCGCACCTACCGCCGCCCAAC
GACGCTTCCCGGCCCGGCGTTGCTGGCATCAGTAGCGGCAGCGGCGGCAG
CGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGATTGGAGCGGCAGG
CCGCATTCATCGAGATCTGGGTGCGGCATCTTTTGAGTCGTCGGTGGCAT
CTACGCGGCGGCGACGTGAGTGTG
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