mRNA_L-elsbetiae_contig10163.215.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10163.215.1
Unique NamemRNA_L-elsbetiae_contig10163.215.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10163.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10163contigL-elsbetiae_contig10163:2303..3871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1569
Cds size795
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10163.215.1prot_L-elsbetiae_contig10163.215.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10163 2336..3130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.5750754-UTR-L-elsbetiae_contig10163:2302..23351622815247.5750754-UTR-L-elsbetiae_contig10163:2302..2335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10163 2303..2335 +
1691682794.3001149-UTR-L-elsbetiae_contig10163:2302..23351691682794.3001149-UTR-L-elsbetiae_contig10163:2302..2335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10163 2303..2335 +
1622815247.594548-UTR-L-elsbetiae_contig10163:3130..38711622815247.594548-UTR-L-elsbetiae_contig10163:3130..3871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10163 3131..3871 +
1691682794.3190534-UTR-L-elsbetiae_contig10163:3130..38711691682794.3190534-UTR-L-elsbetiae_contig10163:3130..3871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10163 3131..3871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.5850077-CDS-L-elsbetiae_contig10163:2335..31301622815247.5850077-CDS-L-elsbetiae_contig10163:2335..3130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10163 2336..3130 +
1691682794.309005-CDS-L-elsbetiae_contig10163:2335..31301691682794.309005-CDS-L-elsbetiae_contig10163:2335..3130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10163 2336..3130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10163.215.1

>prot_L-elsbetiae_contig10163.215.1 ID=prot_L-elsbetiae_contig10163.215.1|Name=mRNA_L-elsbetiae_contig10163.215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=265bp
MEYLLDAVEARSEAAVEVTGVLNMMVDEIEKEEEQGKGMRYDAMLDAHCA
QSGLPAPTAVTGTEKGRQENPRLVISGLLEKITGSREVSDEEKEPEGEEQ
TADDDDTKATMGFLPEAAETRAEASDDMPLTMEALSQLMEKNKLIITRRD
ILNIMMRDQEYEESLVEEVTGEPRLPVTALKEAGRAGNDGKENAAADEEL
EHEEEQREGSMEKRTKKKKRRRKTRAEKNETRRKNEAAKAASKAAETTPA
SGPEGQACDEEHQA*
back to top

mRNA from alignment at L-elsbetiae_contig10163:2303..3871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10163.215.1 ID=mRNA_L-elsbetiae_contig10163.215.1|Name=mRNA_L-elsbetiae_contig10163.215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1569bp|location=Sequence derived from alignment at L-elsbetiae_contig10163:2303..3871+ (Laminarionema elsbetiae ELsaHSoW15)
GACGACGACTTTGACACTGCGACAAGGGGGACTATGGAGTATCTGCTGGA
TGCGGTTGAGGCTAGGAGTGAGGCGGCAGTCGAGGTGACGGGAGTACTGA
ACATGATGGTAGATGAGATCGAGAAAGAGGAAGAACAAGGGAAGGGCATG
AGGTACGATGCTATGCTAGATGCTCATTGCGCTCAATCTGGACTTCCCGC
GCCTACAGCTGTCACCGGTACCGAGAAGGGTCGACAGGAAAATCCGCGCC
TCGTCATTTCTGGGCTCCTCGAAAAAATTACGGGGTCAAGGGAGGTGTCT
GATGAAGAGAAAGAGCCAGAGGGAGAAGAACAGACAGCCGACGACGACGA
TACCAAGGCGACGATGGGGTTCCTGCCCGAGGCAGCTGAGACTAGAGCTG
AGGCGTCCGATGATATGCCGTTGACGATGGAGGCGCTGTCGCAACTTATG
GAGAAGAATAAGCTAATCATAACGCGACGAGATATTTTGAATATTATGAT
GAGGGACCAAGAATATGAGGAATCTCTAGTGGAGGAGGTAACGGGAGAGC
CGAGATTGCCCGTGACGGCACTGAAGGAAGCAGGGAGGGCCGGTAACGAC
GGCAAGGAGAACGCAGCTGCGGATGAAGAACTCGAACACGAGGAAGAGCA
ACGGGAGGGGAGCATGGAGAAGAGAACGAAGAAGAAGAAGAGGAGGCGTA
AAACTAGGGCCGAGAAGAACGAAACGCGAAGAAAAAACGAAGCGGCAAAG
GCAGCCTCCAAGGCAGCCGAAACGACCCCAGCAAGTGGGCCTGAAGGACA
AGCATGCGACGAGGAGCACCAAGCATGAATCGACACGGAGAAGAGAAGAG
GGAGAAAAATAAAACACCCAGCGCACAGGAGAATAAGGCGGGCCGAGACG
GCATCTCCAAAGTAGCTGCTCAGGTAGACGGTATCTCCTCGACAAAGCCG
TGGTACCGCACAAGCCACCTGCCTGCTACAGTCGCAGTCACTTACCCCGT
AGCGGAAGAGGAACGGGTTTGGATGTGATTGGTTTGCTGGAGAGCGTCTG
AAGATAAGAATACATCTATCTAGAGTATTCGATTGCGCTCGGCGGGAAAG
TGGTATGAATGAATGTTTGGCATCATGGCATGACGTGCAGTTTCCCGAAT
AGGTTAGGACTGCCTCGAAACGACTGAATCGGGGTAGAAGTAGATAGATG
CATCCTTGGAGCGGGCCCCCCTCGTGCTGCCTTGTCTCTGCGTAGTATAC
GACTGGCGTGCTCGATGGATTTGTGTTGTATCTGTTTTTCGGTGATCGCT
CCTAGGCCGATGCGTGAGTAATAATAAGTGCCTTTCGCAAATTCCTCCTC
TGACGAAGGGTTAGGGTTAGACTATACTAGACGAGTTGATACATAGCTTA
TTTTCGTCAATTATCGTTTTACCTTGCCTGCTGGACAATAATTTCAACGT
CCCCACGTTGCGCCAAAGGGTGTAATTTACTAGGGGAAGAGACAGCCCCC
CCCCGACTCACAGGTACTGAAGGGTAGGTATAGGCTGAAGAACACAAAAA
ATGTAAAAACTAAAGGTGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10163:2303..3871+

>mRNA_L-elsbetiae_contig10163.215.1 ID=mRNA_L-elsbetiae_contig10163.215.1|Name=mRNA_L-elsbetiae_contig10163.215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1590bp|location=Sequence derived from alignment at L-elsbetiae_contig10163:2303..3871+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGTATCTGCTGGATGCGGTTGAGGCTAGGAGTGAGGCGGCAGTCGA
GGTGACGGGAGTACTGAACATGATGGTAGATGAGATCGAGAAAGAGGAAG
AACAAGGGAAGGGCATGAGGTACGATGCTATGCTAGATGCTCATTGCGCT
CAATCTGGACTTCCCGCGCCTACAGCTGTCACCGGTACCGAGAAGGGTCG
ACAGGAAAATCCGCGCCTCGTCATTTCTGGGCTCCTCGAAAAAATTACGG
GGTCAAGGGAGGTGTCTGATGAAGAGAAAGAGCCAGAGGGAGAAGAACAG
ACAGCCGACGACGACGATACCAAGGCGACGATGGGGTTCCTGCCCGAGGC
AGCTGAGACTAGAGCTGAGGCGTCCGATGATATGCCGTTGACGATGGAGG
CGCTGTCGCAACTTATGGAGAAGAATAAGCTAATCATAACGCGACGAGAT
ATTTTGAATATTATGATGAGGGACCAAGAATATGAGGAATCTCTAGTGGA
GGAGGTAACGGGAGAGCCGAGATTGCCCGTGACGGCACTGAAGGAAGCAG
GGAGGGCCGGTAACGACGGCAAGGAGAACGCAGCTGCGGATGAAGAACTC
GAACACGAGGAAGAGCAACGGGAGGGGAGCATGGAGAAGAGAACGAAGAA
GAAGAAGAGGAGGCGTAAAACTAGGGCCGAGAAGAACGAAACGCGAAGAA
AAAACGAAGCGGCAAAGGCAGCCTCCAAGGCAGCCGAAACGACCCCAGCA
AGTGGGCCTGAAGGACAAGCATGCGACGAGGAGCACCAAGCATGAATGGA
GTATCTGCTGGATGCGGTTGAGGCTAGGAGTGAGGCGGCAGTCGAGGTGA
CGGGAGTACTGAACATGATGGTAGATGAGATCGAGAAAGAGGAAGAACAA
GGGAAGGGCATGAGGTACGATGCTATGCTAGATGCTCATTGCGCTCAATC
TGGACTTCCCGCGCCTACAGCTGTCACCGGTACCGAGAAGGGTCGACAGG
AAAATCCGCGCCTCGTCATTTCTGGGCTCCTCGAAAAAATTACGGGGTCA
AGGGAGGTGTCTGATGAAGAGAAAGAGCCAGAGGGAGAAGAACAGACAGC
CGACGACGACGATACCAAGGCGACGATGGGGTTCCTGCCCGAGGCAGCTG
AGACTAGAGCTGAGGCGTCCGATGATATGCCGTTGACGATGGAGGCGCTG
TCGCAACTTATGGAGAAGAATAAGCTAATCATAACGCGACGAGATATTTT
GAATATTATGATGAGGGACCAAGAATATGAGGAATCTCTAGTGGAGGAGG
TAACGGGAGAGCCGAGATTGCCCGTGACGGCACTGAAGGAAGCAGGGAGG
GCCGGTAACGACGGCAAGGAGAACGCAGCTGCGGATGAAGAACTCGAACA
CGAGGAAGAGCAACGGGAGGGGAGCATGGAGAAGAGAACGAAGAAGAAGA
AGAGGAGGCGTAAAACTAGGGCCGAGAAGAACGAAACGCGAAGAAAAAAC
GAAGCGGCAAAGGCAGCCTCCAAGGCAGCCGAAACGACCCCAGCAAGTGG
GCCTGAAGGACAAGCATGCGACGAGGAGCACCAAGCATGA
back to top