mRNA_L-elsbetiae_contig12602.2100.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12602.2100.1
Unique NamemRNA_L-elsbetiae_contig12602.2100.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12602.2100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12602contigL-elsbetiae_contig12602:3369..5295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size329
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12602.2100.1prot_L-elsbetiae_contig12602.2100.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12602 3369..5293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815451.6674757-CDS-L-elsbetiae_contig12602:3368..34211622815451.6674757-CDS-L-elsbetiae_contig12602:3368..3421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12602 3369..3421 +
1691682904.7315915-CDS-L-elsbetiae_contig12602:3368..34211691682904.7315915-CDS-L-elsbetiae_contig12602:3368..3421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12602 3369..3421 +
1622815451.6783907-CDS-L-elsbetiae_contig12602:4472..46251622815451.6783907-CDS-L-elsbetiae_contig12602:4472..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12602 4473..4625 +
1691682904.7408545-CDS-L-elsbetiae_contig12602:4472..46251691682904.7408545-CDS-L-elsbetiae_contig12602:4472..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12602 4473..4625 +
1622815451.688541-CDS-L-elsbetiae_contig12602:5172..52931622815451.688541-CDS-L-elsbetiae_contig12602:5172..5293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12602 5173..5293 +
1691682904.7513974-CDS-L-elsbetiae_contig12602:5172..52931691682904.7513974-CDS-L-elsbetiae_contig12602:5172..5293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12602 5173..5293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12602.2100.1

>prot_L-elsbetiae_contig12602.2100.1 ID=prot_L-elsbetiae_contig12602.2100.1|Name=mRNA_L-elsbetiae_contig12602.2100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
VDDALDDARGLSLDYINQVSRQVTGHWKPLVDDLVGRGRKAEEGVKAAKE
ALAALAVRQEAQWQAARDRVRKQQSALKRLQALLGPSRGGGGAASTKSTG
ELEREWQVE
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mRNA from alignment at L-elsbetiae_contig12602:3369..5295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12602.2100.1 ID=mRNA_L-elsbetiae_contig12602.2100.1|Name=mRNA_L-elsbetiae_contig12602.2100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1927bp|location=Sequence derived from alignment at L-elsbetiae_contig12602:3369..5295+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGACGACGCCTTGGACGATGCCCGCGGACTCAGCCTTGACTACATCAA
CCAGTAAGTGATTTCCTGCCTCCTTCTGGTGGGCTGTCTGTAGCTCTCTT
TCCTCCCCTGGCGTGGTATTTGGTATTTATTTGGTTTGCTTTTCGAACTT
TCTTTTATTTTGTCTCCCGAGTACGCATGTACTATACCTTTGATTTTGTG
CTGGCAGACGCAAGACCCCCCGGGGTCCAGTTTAGTACCACCGGGCGCGT
ATGTACCATATTTTGTGTATTTTTCTTCCGTGGCGTAAGTGTGCCCCCTT
GAGTGTTTTGTGACCACGGGCCCCCAAGGATGTTTTGGACTAGAGAGCTA
ATGTGAGAAACAACAACAACAACAACAAGTGAGAGCGAAGTAAAGCCAGC
GCGTTCGACACGCGTGTGTGCCGTAATCGTCTCTGAGCCCCCCCCCCCCC
CCGGGGGGGTGTCAACATCTTTGACAGCCGGTTCTCTCCACAATGGATGG
GGTGGAGGGGNNNNNNNNNNCTTGGCCCCCCCCCCCCCCCCGGGGGGGGG
GCACGATCGCGCACGCGGGGTACTCCCCACTCGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGCTATAGCCGAGTGATGCTGTAATCATGTCTGAGTT
CCCCCCGGGGTGTCAAACAAGCTTGAAAGCCGGTCTCTCGGCTGGGATGC
GTGCGCCCTTGGAAGGATTTCGTCGAGATCTTTTGGAATTATTTATTGAA
TTAATTCATGCTTTTCTTCATCTCGTTCCCTCTCGGTGGTGGCAGAGAAA
AATCGGCTGTGGAAATTGTTTGACAATTTCCGATTTTGTTTGAAGAAAAC
TGAGAGACGATACGGTAGGTATATTAACTCGGTAGGTAGGTAGGCAGACG
AACTCGCCGATCGTATGTGTCCAGCAGCTACTTACACCGAAAAGAAAACA
TTAAAAACTCCCATATTATTATATCGGTTCGATAATTCATCGCTGTGCAA
GGAACTGTCGATTCACCCCGGAGCTCCTTCCGCCTCCAGTGTGGGGGACG
ATATTTTCTTTGATTTCTTGATTTTCCTGATTTCTTTTAAAAACGAAAAC
ACAGAGTCTCGCGGCAAGTGACGGGCCATTGGAAGCCCCTGGTGGACGAT
CTGGTCGGGCGTGGGCGGAAGGCCGAGGAGGGCGTGAAGGCGGCGAAAGA
GGCACTTGCGGCCCTGGCTGTCAGGCAGGAGGCCCAGTGGCAGGCTGCGA
GGGACAGGCGAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGGTGTTGGTGTTGGTGTTGGTGTTGTTGGTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGTTGGTGTTGGTGTTG
TTGGTGGTGGTGGTGTTGGTGTTGGTGTTGTTTTTTGTTGTTGTTGTTGC
TGTTGTTGTTGTTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTAGT
GTTTGCGGTCGAGTGGCGCCTGATATTGTGGGCGCTGTGCTCGGCAAATC
TAGATATATTGTTGGCAGCTTTGTTTTCCTTGTTTCTTGATACATATTCA
TTCCCGAGTATGGTGGTATTTACCGCGTCAGCAGAAAATGAATAGCAAAG
GATACACACCACTGGTACGTATGTACCTAGAAGTACAAACTAACCGCGAC
AATCTGACCATCCCTGTGCTGACTGCGTAATGCATGTATGCCGTGCTGCT
GCAGGGTGAGGAAGCAACAGTCCGCGCTGAAACGCCTGCAAGCGCTGCTG
GGCCCCTCCCGAGGGGGGGGCGGGGCAGCGAGCACGAAGTCGACCGGCGA
GCTGGAGAGGGAGTGGCAGGTGGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12602:3369..5295+

>mRNA_L-elsbetiae_contig12602.2100.1 ID=mRNA_L-elsbetiae_contig12602.2100.1|Name=mRNA_L-elsbetiae_contig12602.2100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig12602:3369..5295+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGACGACGCCTTGGACGATGCCCGCGGACTCAGCCTTGACTACATCAA
CCAGTGGACGACGCCTTGGACGATGCCCGCGGACTCAGCCTTGACTACAT
CAACCAAGTCTCGCGGCAAGTGACGGGCCATTGGAAGCCCCTGGTGGACG
ATCTGGTCGGGCGTGGGCGGAAGGCCGAGGAGGGCGTGAAGGCGGCGAAA
GAGGCACTTGCGGCCCTGGCTGTCAGGCAGGAGGCCCAGTGGCAGGCTGC
GAGGGACAGAGTCTCGCGGCAAGTGACGGGCCATTGGAAGCCCCTGGTGG
ACGATCTGGTCGGGCGTGGGCGGAAGGCCGAGGAGGGCGTGAAGGCGGCG
AAAGAGGCACTTGCGGCCCTGGCTGTCAGGCAGGAGGCCCAGTGGCAGGC
TGCGAGGGACAGGGTGAGGAAGCAACAGTCCGCGCTGAAACGCCTGCAAG
CGCTGCTGGGCCCCTCCCGAGGGGGGGGCGGGGCAGCGAGCACGAAGTCG
ACCGGCGAGCTGGAGAGGGAGTGGCAGGTGGAAGGTGAGGAAGCAACAGT
CCGCGCTGAAACGCCTGCAAGCGCTGCTGGGCCCCTCCCGAGGGGGGGGC
GGGGCAGCGAGCACGAAGTCGACCGGCGAGCTGGAGAGGGAGTGGCAGGT
GGAA
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