mRNA_L-elsbetiae_contig1259.2088.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1259.2088.1
Unique NamemRNA_L-elsbetiae_contig1259.2088.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: D7FTE1_ECTSI (Tocopherol phytyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE1_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 9.950e-131
Identity = 201/260 (77.31%), Postives = 216/260 (83.08%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEIDK+NKPYLPIPAGNLT R AK TV+LCLLAG  LGLAPC+LGSPGLA               PP RLKRFPQVAALCILVVRGSIINGGFYSHA+LAGYGLS EKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDV GDR FNIPSFSVVLGE KLF+FARRLLT LLWSTA  LGV AK AA+ASLP T+  R  ++A AL+ GQ VR RAA  +P++P QVY FYM LWK+FY+SYLFLPLAR
Sbjct:  119 NQITDVEIDKINKPYLPIPAGNLTSRAAKLTVTLCLLAGAVLGLAPCSLGSPGLAXXXXXXXXXXXXXXXPPFRLKRFPQVAALCILVVRGSIINGGFYSHAQLAGYGLSREKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVEGDRMFNIPSFSVVLGETKLFAFARRLLTALLWSTAGVLGVGAKAAASASLPLTSGLRGLMSAVALIAGQLVRRRAAGVDPKQPKQVYDFYMDLWKLFYLSYLFLPLAR 378          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A6H5JCM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM7_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 9.780e-129
Identity = 205/260 (78.85%), Postives = 217/260 (83.46%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEIDKVNKPYLPIPAGNLT R AK TV+LCLLAG  LGLAPC+LGSPGLA                 LRLKRFPQVAALCILVVRGSIINGGFYSHA+LAGYGLSGEKTALW LTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDR FNIPSFSVVLGE KLF+FARRLLT LLWSTAAALGV AK AA+ASLP T+     V+A AL+ GQ +R RAA  +PE+P QVY FYM LWKIFY+SYLFLPLAR
Sbjct:  230 NQITDVEIDKVNKPYLPIPAGNLTSRAAKLTVTLCLLAGAVLGLAPCSLGSPGLAXXXXXXXXXXXXXXXXXLRLKRFPQVAALCILVVRGSIINGGFYSHAQLAGYGLSGEKTALWTLTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRMFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTS---GLVSALALITGQLMRRRAAGVDPEQPKQVYDFYMDLWKIFYLSYLFLPLAR 486          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A835ZGZ5_9STRA (Tocopherol phytyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ5_9STRA)

HSP 1 Score: 230 bits (586), Expect = 3.200e-70
Identity = 135/275 (49.09%), Postives = 171/275 (62.18%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALG-LAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWA---LT--------LPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAAS---LPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEID+VNKP LPI AG L++R A  TV+ CL+ GV LG L P  L S  L   +V S L+G  YSLPP+RLKRFP +AA+CIL VRG+++N  FY+H  L    L        +   LT        LP RDA+C L + +F VF VVIAL+KDVPD  GD + NI SF+V +G  ++F+ A  L+  LLW T AA+  +A  AA+A+   L W   +RA +   A   G+TV  +    NP +P QVYKFYMFLW +FY SYL LP  R
Sbjct:   95 NQITDVEIDRVNKPELPIAAGRLSMRAAIATVTACLVGGVGLGYLMPAALTSHALQGVIVGSTLLGGMYSLPPIRLKRFPLLAAMCILSVRGAVMNACFYAHFALKSGALXXXXXXXLSPPSLTSGIRDVCLLPLRDARCGLLVGFFAVFGVVIALLKDVPDFKGDAQHNIRSFTVRMGRERVFAAASNLMIALLWGTGAAMAAAAVRAASAAGTPLSWVVGARAALXXVAGAAGRTVLLKRRAVNPTDPKQVYKFYMFLWGLFYTSYLCLPFVR 369          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: B7G488_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G488_PHATC)

HSP 1 Score: 230 bits (586), Expect = 8.490e-70
Identity = 131/260 (50.38%), Postives = 169/260 (65.00%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEIDK+NKP+LPI AG L+ +    T+ L L   + LG A     + GL + +  S ++GT YSLPP RLKRFP +AA CI+ VRG+IIN  F++HAK A +G SG  T L  L     D +C L+  +F VF +VIALMKDVPDVAGDR  N+ +FSV LG+ ++F  +RRLL+ L W+     G +A +A  A L   AASR+  A  A + G +VR  A   +PE  GQVY +YM LWK+FY+SYL LP AR
Sbjct:  152 NQITDVEIDKINKPFLPIAAGILSKKDGIATILLALFGSLWLGAANPVFSTQGLNVALWGSGILGTMYSLPPFRLKRFPLLAAFCIVAVRGAIINASFFAHAKAAAFGGSGV-TVLNCLA---TDPRCYLSSIFFAVFGIVIALMKDVPDVAGDRNSNVRTFSVRLGQGRIFQASRRLLSGLFWTVGVGFGKAAFQAPTAGL---AASRSLTAVAAFLGGCSVRKDAQGVDPENAGQVYSYYMHLWKLFYLSYLVLPFAR 404          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S3P573_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P573_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.170e-67
Identity = 134/260 (51.54%), Postives = 169/260 (65.00%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEIDKVNKPYLPI AG LT++ A  TV L L+A +A+GL   + G+ GL + +  S ++GT YSL P R KRFP +AA CI+ VRG+IIN  FY+HAK +  G S   T L  L     D  C L+  +F VF +VIALMKDVPDV GDR  N+ +FSV LG+A++F+  RRLL+ L W+ +AA    A  A + S    AA R   AA +   G +VR  +   NPE+  QVY +YM LWK+FYMSYL LP AR
Sbjct:  195 NQITDVEIDKVNKPYLPIAAGLLTMKDAIVTVVLALVASLAMGL---SYGTQGLNVALWGSAILGTIYSLEPFRFKRFPVLAAFCIVAVRGAIINASFYAHAKASVLG-SPVATVLGCLA---TDRACFLSSLFFGVFGLVIALMKDVPDVVGDRLANVKTFSVRLGQAQVFTGMRRLLSGLFWAVSAAFVNQAVRAFSNSSMGLAACRLVTAAASAWAGWSVRQESQSVNPEDSDQVYSYYMHLWKLFYMSYLVLPFAR 447          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A448ZLS0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLS0_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.180e-66
Identity = 127/262 (48.47%), Postives = 167/262 (63.74%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAAL--GVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQ+TDVEIDK+NKP LPI +G+L+++ A+  V   L+  +ALG +   L + GL + + +S ++GT YSLPP R KRFP +AA CI+ VRG++IN GF++HA  A YG SG  + L  L     D +C L+  YF VF +VIALMKDVPDV GD   NI + SV LG + ++    RLLT L W    A   G  A  A+AA      + RA V A AL+ G +VR  A+  +P  P +VY FYM LWK+FY+SYLFLP AR
Sbjct:  176 NQVTDVEIDKINKPDLPIASGDLSVKDARLLVVGSLVLSLALGASVPALATEGLGVALGVSAVLGTVYSLPPFRFKRFPLLAAFCIVAVRGAVINAGFFAHAHAAAYGGSGRGSVLGCLA---GDLRCGLSSLYFAVFGLVIALMKDVPDVEGDALSNIRTASVRLGPSAVYQAMHRLLTGLFWGVGLAFFRGALAAPASAA----VRSGRALVGAAALLAGASVRREASPVDPHNPREVYGFYMHLWKLFYLSYLFLPFAR 430          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S2CJS5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJS5_9STRA)

HSP 1 Score: 220 bits (561), Expect = 3.220e-66
Identity = 135/272 (49.63%), Postives = 174/272 (63.97%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALG-LAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWAL----------TLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVS-AKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEID+VNKPYLP+ AG+LT+  AK  V L LLAG+ALG L PC+  +  L +T+VLS LIGT YSL P RLKRFP  AALCIL VRG++IN GFY HA +   GL  + TA  AL          TLPF  AKC LA  +F +F  VIALMKDVPDV GD+ + I S +V LG  ++F+ AR  L  L+  T  AL  + A    +  +      R  V A +L+  +T+++ + + +  + GQVY+FYMF+WK+FY SY+ LP  R
Sbjct:  124 NQITDVEIDRVNKPYLPLAAGHLTMPEAKWVVGLSLLAGLALGFLHPCS--TFPLRMTLVLSALIGTFYSLEPFRLKRFPFFAALCILTVRGAVINIGFYGHA-VQNLGL--DVTAQNALASPVIRKILSTLPFESAKCGLATLFFALFGTVIALMKDVPDVVGDKLYGIKSLTVRLGPERVFTIARDALCLLMGVTGGALAATGALLVFSQGVVGRGLLRVIVGASSLLIARTLKTMSCRVDTADQGQVYQFYMFVWKVFYASYILLPFVR 390          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S0ULR7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0ULR7_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.280e-65
Identity = 126/267 (47.19%), Postives = 164/267 (61.42%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSP-----GLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAAL--GVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEIDK+NKP LPI AG+L+++GA  TV L L+  + +G+    +GSP     GL + + +S ++GT YSLPP RLKRFP +AA CI+ VRG++IN GF++HAK A YG S        L  P    +C L+  YF VF +VIALMKDVPD+ GD   NI + SV LG   ++    RLLT L W    A   G      A  ++      RA V   AL+ G +V+  AA  +PE P +VY +YM LWK+FY+SY  LPLAR
Sbjct:   23 NQITDVEIDKINKPNLPIAAGDLSVKGATITVILSLVLSLVMGV----VGSPAFATEGLNMALGMSAILGTLYSLPPFRLKRFPLLAAFCIVSVRGAVINAGFFAHAKAAAYGSSAGSLLGCLLNNP----RCLLSSLYFAVFGLVIALMKDVPDIKGDELSNIRTVSVRLGAKTVYKMMHRLLTGLFWGAGVAFFRGAIVNNKATMTVRL---GRAVVGISALLAGASVQKEAAPVDPENPKEVYDYYMHLWKLFYLSYFVLPLAR 278          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S0KBA4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBA4_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.290e-65
Identity = 121/256 (47.27%), Postives = 162/256 (63.28%), Query Frame = 2
Query:   14 DVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            +V  D++ KPYLPIPAG L +  AK  VS+CL  G++LGL    +G+PGL + +  S ++GT YSLPP RLKRFP +AA CI+ VRG+IIN GF++HA+   +G S        L L   D KC L+  ++ +F +VIALMKDVPDV GD K NI SFSV +G+ K+F  ARR L+ LL+   A    + + A+  S+    ASR  V   ++ FG   R  +   NPE   +VY +YM+LWKIFY+SY  LP AR
Sbjct:    1 EVNFDRLKKPYLPIPAGQLAVPDAKKIVSVCLTVGLSLGL---LMGTPGLNMALWGSAILGTIYSLPPFRLKRFPFLAATCIVAVRGTIINVGFFAHAQKFVFGNSSG-----ILKLFLSDRKCLLSSLFYGIFGIVIALMKDVPDVEGDEKANIRSFSVRVGQKKIFKGARRTLSLLLFGYGAGFLNAGRSASTFSV---LASRMIVGLSSIYFGVKARENSRDVNPESSSEVYDYYMYLWKIFYLSYFSLPFAR 245          
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A1E7F9X4_9STRA (Homogentisate phytyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9X4_9STRA)

HSP 1 Score: 220 bits (560), Expect = 4.610e-65
Identity = 124/264 (46.97%), Postives = 166/264 (62.88%), Query Frame = 2
Query:    2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALG----VSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
            NQITDVEIDK+NKP LPI AG+L+++ A   V + LL  V LG++  +L + GL + + +S ++GT YSLPP RLKRFP +AA CI+ VRG +IN GF++HAK+A +G SG       L     D +C L+  YF VF VVIAL+KDVPDV GD   NI + +V LG   +F    RLLTTL W    A      +++  + ++S       R  V   ALV G +V+  AA  +P+ P +VY FYM LWK+FY+SY  LP+AR
Sbjct:  223 NQITDVEIDKINKPDLPIAAGDLSMKNATIIVLVSLLLSVVLGVSIPSLTTSGLTMALGVSAVLGTVYSLPPFRLKRFPVLAAFCIVAVRGGVINAGFFAHAKVAAFGGSGS-----ILHYLLTDPRCYLSSLYFAVFGVVIALIKDVPDVKGDNLSNIRTVAVRLGPNSVFRGMHRLLTTLFWGVGIAFFRAAVITSSTSTSSSTMMVRLGRIIVGISALVAGASVQKEAAPVDPDNPTEVYGFYMHLWKLFYLSYFVLPIAR 481          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE1_ECTSI9.950e-13177.31Tocopherol phytyltransferase n=1 Tax=Ectocarpus si... [more]
A0A6H5JCM7_9PHAE9.780e-12978.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGZ5_9STRA3.200e-7049.09Tocopherol phytyltransferase n=1 Tax=Tribonema min... [more]
B7G488_PHATC8.490e-7050.38Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3P573_9STRA1.170e-6751.54Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZLS0_9STRA1.180e-6648.47Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2CJS5_9STRA3.220e-6649.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0ULR7_9STRA2.280e-6547.19Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S0KBA4_9STRA3.290e-6547.27Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A1E7F9X4_9STRA4.610e-6546.97Homogentisate phytyltransferase n=1 Tax=Fragilario... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1259contigL-elsbetiae_contig1259:21208..26977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontocopherol phytyltransferase
Ec32 orthologEc-21_000990.1
Exons6
Model size847
Cds size474
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.9012418-UTR-L-elsbetiae_contig1259:21207..214271622815449.9012418-UTR-L-elsbetiae_contig1259:21207..21427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1259 21208..21427 -
1691682904.0688255-UTR-L-elsbetiae_contig1259:21207..214271691682904.0688255-UTR-L-elsbetiae_contig1259:21207..21427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1259 21208..21427 -
1622815449.9116213-UTR-L-elsbetiae_contig1259:23137..232901622815449.9116213-UTR-L-elsbetiae_contig1259:23137..23290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1259 23138..23290 -
1691682904.078028-UTR-L-elsbetiae_contig1259:23137..232901691682904.078028-UTR-L-elsbetiae_contig1259:23137..23290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1259 23138..23290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.9266343-CDS-L-elsbetiae_contig1259:23290..233251622815449.9266343-CDS-L-elsbetiae_contig1259:23290..23325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 23291..23325 -
1691682904.0858362-CDS-L-elsbetiae_contig1259:23290..233251691682904.0858362-CDS-L-elsbetiae_contig1259:23290..23325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 23291..23325 -
1622815449.9413688-CDS-L-elsbetiae_contig1259:24656..247851622815449.9413688-CDS-L-elsbetiae_contig1259:24656..24785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 24657..24785 -
1691682904.0935438-CDS-L-elsbetiae_contig1259:24656..247851691682904.0935438-CDS-L-elsbetiae_contig1259:24656..24785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 24657..24785 -
1622815449.953136-CDS-L-elsbetiae_contig1259:25296..253771622815449.953136-CDS-L-elsbetiae_contig1259:25296..25377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 25297..25377 -
1691682904.1012528-CDS-L-elsbetiae_contig1259:25296..253771691682904.1012528-CDS-L-elsbetiae_contig1259:25296..25377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 25297..25377 -
1622815449.9673777-CDS-L-elsbetiae_contig1259:25777..258401622815449.9673777-CDS-L-elsbetiae_contig1259:25777..25840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 25778..25840 -
1691682904.1092205-CDS-L-elsbetiae_contig1259:25777..258401691682904.1092205-CDS-L-elsbetiae_contig1259:25777..25840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 25778..25840 -
1622815449.9781902-CDS-L-elsbetiae_contig1259:26811..269771622815449.9781902-CDS-L-elsbetiae_contig1259:26811..26977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 26812..26977 -
1691682904.1172078-CDS-L-elsbetiae_contig1259:26811..269771691682904.1172078-CDS-L-elsbetiae_contig1259:26811..26977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1259 26812..26977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1259.2088.1prot_L-elsbetiae_contig1259.2088.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1259 23291..26977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1259.2088.1

>prot_L-elsbetiae_contig1259.2088.1 ID=prot_L-elsbetiae_contig1259.2088.1|Name=mRNA_L-elsbetiae_contig1259.2088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
QSDHGRGNRQGQQAVPPDTRRQPDTQGRQDHGLAVPPRRSGSRPRTVHAW
LSGPCADGGSLGADRHQLLAPSSAPEAIPAGGSVVHLGGEGIYHQRRVLL
ARQVGRVRPLRRKDGLVGLDVAVQGRQVRPGPGVLYGLRRGDCSHEGRAG
RGWRPQV*
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mRNA from alignment at L-elsbetiae_contig1259:21208..26977-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1259.2088.1 ID=mRNA_L-elsbetiae_contig1259.2088.1|Name=mRNA_L-elsbetiae_contig1259.2088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5770bp|location=Sequence derived from alignment at L-elsbetiae_contig1259:21208..26977- (Laminarionema elsbetiae ELsaHSoW15)
CAATCAGATCACGGACGTGGAAATCGACAAGGTCAACAAGCCGTACCTCC CGATACCCGCCGGCAACCTGACACTCAGGGGCGCCAAGACCACGGTCTCG CTGTGCCTCCTCGCCGGAGTGGCTCTCGGCCTCGCACCGTGCACGCTTGG CTCTCCGGGCCTTGCGGTAGGATTTTCACCAAAGTGGCTTCGTTAGTTTT TTTTTTTTTTTTCTTGAACTTTTTTCAGAATTTTCTAGAAATTTTAGTGT TTCAGGCACGGTAGGTACAGGGTACGTCAAAGGCTTGAACTCGGCACAAG TATGCTTTCTGCGAGATTGCGGAGGAACAAAAGTCCTTATTTTACTGATT TTAGTGTTTTTAGGTGTAGCTACTGTTGTAAAACGAAGAAAGCAAACGCC TACCGAGTTCCAAGCCTAGGGGGTAAAACAGCACGGTGGATGGGGGTCTG GCGAACCTTCGCCGTCCGCGTCGCACCCTAAGTCTGCTTGTCGTAAATAC TGTTTGTTTAGACTAAGCTGATGGCGGCTGCTGCATTTGGGCTCTTCTGT GTAAAACCTTGCGTATCGGATTTATGTATGTAGCGGGGGGGTGTACATGA GCTGATCCGGGTTCTCTTGGCAATACCGAATGATGCACAAGGGAGAGCGT CGCCGCCCGTGCCAGGAACACACGGGTGGTATGTATGTACATCACGACGG TGCCCCCACAGCCCCAATCCGCGGCCCTCACTATCGCGTGCCATTGTCTC GCCCCCCCCTCCGCCCATCCAAGTTCCTCGACGGTTGTTGGTTTTACTGC AAATGCTAAATTTCGTGCGTGTTTGTCTGGGTTCTCGCTCCCCTCAGCCC CTCCCCCCTGATCCTCTCTGTTTATTTCTTCATCATGCAGAGTGTACTAC ATCAGATACTACTTTACTGCTGAACATCATTTTTTGTATTTTGTTCCACA TACTTCTGAACTCATTTTTCGGTTTTTTGTTCTACTTCTGAACATCATTT TTGCGTTTTGCCCATTTTTGTTCCTCTCTTCCACTCCGTCCGCGGGATCG AATCGATCGTTGAATCAACCCGCGGCTAACTTAAAACGCGCCCATCCCCA CTTCTATGTGCGCTCCGCCTCTGCCGATTGGTTGCAGCTGACGGTGGTTC TCTCGGTGCTGATCGGCACCAGCTACTCGCTCCCTCCTCTGCGCCTGAAG GTGGGAGGTTCGGCTCGGAAGGCAGAGGGGAACAGGGAGTCGGTTGTGAT TTCTTCCAGTAGTAGTCAAACCTGCGAAGACGTAGGTGACACAAGATACC ACACCCCCTGGATATATTTTCAAAACTCGATTCCTCCCCCTTAAGAAGAG CGCCACTGCCGAAAGGAGTGGCGTTGGAAATATCTAGTCGAGGGCTGTCC GAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCGTTACGGTGTAATGGAG CTCTAAAAGTGGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTACT GTGTGCACCGTACAGTAGTAGCCTCACACAGCAGCAGGCACACTCACCCC TTTTTTCTCCCTGCCCCCTTCCCAAACCTCCAAACCTTCCCCGCCCACAG CGATTCCCGCAGGTGGCAGCGTTGTGCATCTTGGTGGTGAGGGGATCTAT CATCAACGGCGGGTTTTACTCGCACGCCAAGGTGTGTATGTGTTGTGTGT GTGTGTGTGTGTGTGTTGTGTGTGTATTTTTTTTTTTTTGTCTGCCCATT ATTGGATTTTGTCGTCTGCCCCTCTGGCCCCCATCCTCCACTTCTACTCT AGCTAGACGACCCAACCGGGGTCACATAGGAGGGGGGGGTTGGACCCCGT CCTGCGGCGCCTGCCTAATTTTTTTTTTTATCGCGTGTGTTTGTGTGTGT GTTTATCTCTGTACAGCCTCGCCTCGCGGTTCGACTATATGATATATGCC GGATTTTGTAGGGTATACATAGCGTGCTTCTTCTTGCTGCCGCTGCTGCT CCGCCCTCCCGAGCACCTTTACGCTGTCCTCTTCAGCGTCGACATTAACT GTTGTCGCCCTTTCGTTCACTTCACCTGTCGCTTTGGATTCATTTTTCTC TTTGCGCTGCTGCCGCTGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCCCTGTCGTTGGTCCGGTCGCCTTAGTTGGCCGG GTACGGCCTCTCCGGCGAAAAGACGGCCTTGTGGGCCTTGACGTTGCCGT TCAGGGACGCCAAGTGCGCCCTGGCCCTGGCGTACTTTACGGTCTTCGCC GTGGTGATTGCTCTCATGAAGGTATGCATGTATATAAACACGTGTAAGTC TAAAAGTCGGTCGAGGGGGTATGGTATTTTGTGTCACCTACGGTGGTACG TGGGCCTACTCCATGGAAGTCCATTTCCATCTTCTGCTCTTAAAAAGCCA TATATGTATACCATACCATACTTGTGACTTGGTACATAGATCTACAAGGG TTGGCCGCTCACGCGGCCCCGCTTTATTGAAATCGCTTCCAAGGCAATGC TAAATATAGTCATACCTTATGTATTTGTCGAGGTGAACACAAATCTGCAC AAATCGGCAGCCAATGGCATATGACTATATATAGTCATATACCATTGTCG GCAGCAGCAGTTGCTTTTTTAACAAAACTTCCGAAAAACACCCGTCAGCA GGAGGCGGATGCTATTTAGCTTCCACCAGCGACTTCATTAGAGTGCACGT AAAGGATGAGCAGAGGTGTGCCCTCCGTATTTGGCGGCGCTGCCGTGAGA GTGTAGCCGTGTACACCATCTTGCACAATGTGTATCTAGGGTGCCTCGGG GAGGGTACACGTTTGGCTCGCGCTTGACCCCTTCGGCGAGTCAAAACGAA GTTTCAAGCAAGAGTCAAGTTTTTGAAAAATCCATGTTTGTCTAGAGACA GAGAGACAGAGGCGGAAAGAGAGAAACCTGTACAGAGAGAGGGAAAGTGA GCCAGAGTGAGAAGGCTTGAATTGTACTGTGAAGGGTGTGTGGCCACAGA GGACGCGCTGATAATGTGGGAGCGGAGCGATAAATCCGAAATAGAGGCCT CTCGAACCGAGAGTCACACATCAATTCAAATCGATATACGGATACGATAA CAGGATGCGGTCTGAACACCGGCCAGGACTCACACATATCATATCATTTC AAACCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGGTGGGAGGCGG TGCAAAGCTCTTACTTCCGCCTCGGAAAGATGGCTCCGGACAATATCCCA CGCGACAGTCATCATTCCAAAAAAATAAATGCAACTGCTCTGCATACAGA GAGCGAGAAAAGAGCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGGAGCATAAACTGTGCAAGGTGTGTTGTAGTGGGGGTTGAGAGAG AGAGAGAGACAGGAGGTAGGACCCGAAATCCATTCCCAACGGGTCAAATG GTGGCATCACAGAGCCCTAAAAGTCCGAATACTCCGCTCACAGAGGCCGA GAGGCGGTGAAATGCAGGCTTCTCACGAAAATGTCAATTCTTAACAGATT TATACCATACCATACTTCGGACTTGGTACATCCATCCCCGCTCGATTCGC AGGACGTGCCGGACGTGGCTGGAGACCGCAAGTTTAACATCCCGTCGTTC TCCGTGGTGCTGGGAGAAGCCAAGCTTTTCTCCTTTGCCCGTCGCCTGCT GACGACGCTGCTGTGGTCCACGGCGGCGGCTCTCGGCGTGAGCGCTAAGG AGGCCGCCGCGGCTAGCCTGCCTTGGACAGCCGCGTCGAGGTGAATATGT ACTCTACTTGCTTGTGTAGCTCGCAAACTATTACGGTGCCAGACAGACAG ATGTGCATGCATAGTTTGGGTCGTCTAGCTAGTCGTAGTGGAGTATGGGG GCCAGTGGGGCAGACGACGAATATGTATGCCACTAATGGGAGGAGGAAAA AAAAAAAAAACAGATGTGCAGTGTCTGCAAATGTCGCAAGTAGATAGATA TGTGATGCAGAGTGTGTGTATTTTGAATCTACCTGCAATTTTTGTCGGGA GGCAAACGTTATCTGGGTGTCGTGGCTTCCCGCCAGATGATAGGTGCCCA TGTTCTGAACTTGGGAGAACTTGTTTTTGTTATTTTTTGCTCTCAGTAAA TAGCGCCAATGCTGCTGTTTGTTTTGTTTTTTCCTTTCTTCTTTTCCCTT TTCAATGTTGGATTATTCGTCGTCTGCCCCACTGGCCCCCTTCCTCCACT ACGGCTAGCTAGACGACCCAACCAGGGTCACACAGGAGGGGGCATTGGAC CCCCTACCTGTTATGTCTTTATCGCGAGCTGTGTGCCCACATGAATATAC ACCCATGATATCCATGTATGTATGTACACGTGCATTTCGGATGAGTCGTG TCCAACCCTCTCGTCCCGACCGGCGATTCTTCGTTTGTGGATATCTGAGG GTTAGGGTTAGGGTGGGGTCGGTTTTGCTCCTGCATAAACCAACGCATTC ATTCCTCTTGGACAGTAGTCGAAATCTCTGTACATGCGCCTTACATGCTG CTGTCCTTCTCCCGTGTACAAAACCTGTGTATATAGCTTGTTAACTCTCC GCGAATAACTCTCCGCAAAAAATGCAGCAGATTTCCGCACGGGAGGTCTT TCAGAATATGGTGTCTTTGCCGCTGGCAGCGGCGAATGTACGTCCGCCCT GTCGGGATGAAAGTCATTCCACGGCCGTTTTTTTTATTTTTTTCTACTAA AAGATGTTCCAAAAATCCCGAGTACCGTAGGTGACACAAGATACCACACC CCCTGGACATATTTTCAAAGCTCGATTCCTCCCCAGCAAGAAGAGCGCCA CTGCCGAAAGGGGTGGCGTTAGAAATATCTAGTCGAGGGCTATCCGAAAA TGTGTCCTTCGGTGCTGGCACCCTCTTCGTTACGGGGTAATGGAGCTCTA AAAGTCGGTCCTGGGGGTGTGGTATCTTGTGTCACCTACGGTACATCATT GGCCTGCGCTTTTGTGTTTGGTTTTCGTGGAGAGTTGGTGATTAGAAATA CTACTTCGCCTTGCCCTCCGACAACCACAGATGGATTCAAGATACACACA CACTCATGCATACGCCACATCCTCTACTTGCGACATTCGCACAGAAGACA GACACACACGCACTCACGCTTGCACCACGTATTCTACTCGCGACATTCGT AGACAGAATAAAAAATGCGCATATGTTTGTTTTATCTATATTCGAACTGC ATCAGTGTTGGATTAGTGCATACGGACACACGGAGGTGTACTGGATACAA TAGAGAGATCGGAAACGGTTTTTAATGCGAAGAACACATACATACGCACA TGCTAATCCGCACTTACTGTCATTATTGTTATTATCACCATCGGCTGTAA CGGTTTATAATGTGAAGAAAACAACACACATGCCTACCCGCACCTAAATA TCATCATTTTTGTTTTCGTTGTCATCATTGGCTGTTTCGGTCGCTGGCAG GGCGTTCGTGGCGGCTTGGGCCCTGGTGTTCGGGCAGACGGTGCGCAGCC GGGCTGCCAAGACCAACCCGGAGGAGCCCGGCCAAGTGTACAAATTCTAC ATGTTCCTGTGGAAGATCTTTTACATGAGTTATCTGTTCTTACCTCTGGC ACGTTGAGCGGAGGGGGGACGGACGGACAGGCAGAGTGTTGCCTGTCCCT GCCTCTGGCACCGTGTGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1259:21208..26977-

>mRNA_L-elsbetiae_contig1259.2088.1 ID=mRNA_L-elsbetiae_contig1259.2088.1|Name=mRNA_L-elsbetiae_contig1259.2088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1259:21208..26977- (Laminarionema elsbetiae ELsaHSoW15)
CAATCAGATCACGGACGTGGAAATCGACAAGGTCAACAAGCCGTACCTCC
CGATACCCGCCGGCAACCTGACACTCAGGGGCGCCAAGACCACGGTCTCG
CTGTGCCTCCTCGCCGGAGTGGCTCTCGGCCTCGCACCGTGCACGCTTGG
CTCTCCGGGCCTTGCGCAATCAGATCACGGACGTGGAAATCGACAAGGTC
AACAAGCCGTACCTCCCGATACCCGCCGGCAACCTGACACTCAGGGGCGC
CAAGACCACGGTCTCGCTGTGCCTCCTCGCCGGAGTGGCTCTCGGCCTCG
CACCGTGCACGCTTGGCTCTCCGGGCCTTGCGCTGACGGTGGTTCTCTCG
GTGCTGATCGGCACCAGCTACTCGCTCCCTCCTCTGCGCCTGAAGCTGAC
GGTGGTTCTCTCGGTGCTGATCGGCACCAGCTACTCGCTCCCTCCTCTGC
GCCTGAAGCGATTCCCGCAGGTGGCAGCGTTGTGCATCTTGGTGGTGAGG
GGATCTATCATCAACGGCGGGTTTTACTCGCACGCCAAGCGATTCCCGCA
GGTGGCAGCGTTGTGCATCTTGGTGGTGAGGGGATCTATCATCAACGGCG
GGTTTTACTCGCACGCCAAGTTGGCCGGGTACGGCCTCTCCGGCGAAAAG
ACGGCCTTGTGGGCCTTGACGTTGCCGTTCAGGGACGCCAAGTGCGCCCT
GGCCCTGGCGTACTTTACGGTCTTCGCCGTGGTGATTGCTCTCATGAAGT
TGGCCGGGTACGGCCTCTCCGGCGAAAAGACGGCCTTGTGGGCCTTGACG
TTGCCGTTCAGGGACGCCAAGTGCGCCCTGGCCCTGGCGTACTTTACGGT
CTTCGCCGTGGTGATTGCTCTCATGAAGGACGTGCCGGACGTGGCTGGAG
ACCGCAAGTTTAAGACGTGCCGGACGTGGCTGGAGACCGCAAGTTTAA
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