prot_L-elsbetiae_contig10159.208.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10159.208.1
Unique Nameprot_L-elsbetiae_contig10159.208.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length88
Homology
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.240e-40
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 0
Query:    7 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            +A   GGGELCEFFEGYSA+GSDAAMPNGIYSLDDLKEFG+EKGWCPYFLARHIINHANVLVYNYQYMLDPKV G
Sbjct:  145 KAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAG 219          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.860e-33
Identity = 53/67 (79.10%), Postives = 63/67 (94.03%), Query Frame = 0
Query:   15 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            ELC+F+E Y A+GSD+ MP+GIYS++DLK+FGREKGWCPYFLARH+INHAN+LVYNYQYMLDPKV G
Sbjct:  191 ELCQFYEEYDANGSDSVMPSGIYSIEDLKDFGREKGWCPYFLARHVINHANILVYNYQYMLDPKVAG 257          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S1UJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJA8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.560e-31
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    7 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            RA E    ELC+F+E Y  +G+DA +P GIYSL+DL++ GRE+GWCPYFLARH++ HANVL+YNYQYMLDPKV G
Sbjct:  125 RAQEGAEVELCDFYENYDQNGTDAVVPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAG 199          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.470e-31
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 0
Query:   15 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            E C+F+E Y   GSDAA+PNGI+SLDDLK  GREKGWCPYFLARH+INHA VLVYNYQYMLDPKV G
Sbjct:  197 ETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAG 263          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.310e-30
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 0
Query:   15 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            E C+F+E Y   GSDAA+PNGI+SLDDLK  GREKGWCPYFLARH+INHA VLVYNYQYMLDPKV G
Sbjct:  197 ETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAG 263          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.310e-30
Identity = 52/75 (69.33%), Postives = 63/75 (84.00%), Query Frame = 0
Query:    7 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            RA E    ELCEF+E Y A+G+D A+P GIYSL+DL++ GRE+GWCPYFLARH++ HANVL+YNYQYMLDPKV G
Sbjct:  189 RAQEGASVELCEFYEQYDANGTDTAIPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAG 263          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 118 bits (295), Expect = 5.470e-29
Identity = 47/67 (70.15%), Postives = 60/67 (89.55%), Query Frame = 0
Query:   15 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            ELC+++E Y  +G+DA + +GIYSLDDLKE G+++GWCPYFLARHIINHAN+L+YNYQY+LDPKV G
Sbjct:  154 ELCQYYEEYEKNGTDAGIAHGIYSLDDLKELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAG 220          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A1Y1HMG9_KLENI (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMG9_KLENI)

HSP 1 Score: 115 bits (288), Expect = 4.740e-28
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 0
Query:   15 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 81
            ELC+FFEGY   G+DA +P G+Y+L D+K FGR+KGWCPYFLARH+I  ANV++YNYQYMLDPKV G
Sbjct:  152 ELCDFFEGYEKKGADALLPAGVYTLHDMKVFGRQKGWCPYFLARHMITFANVVIYNYQYMLDPKVAG 218          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S3FSW1_9CHLO (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FSW1_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 1.630e-27
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 0
Query:    5 GGRASETGGG---ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKV 79
            GG AS  GGG   ELCEF+E Y + GS+A +P G+Y+LDDLK FG ++ WCPYFLARH+I++ANV+VYNYQYMLDPKV
Sbjct:  114 GGSASGEGGGAAHELCEFYEEYESKGSEAILPPGVYTLDDLKVFGEQRRWCPYFLARHMISYANVIVYNYQYMLDPKV 191          
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A061RQC9_9CHLO (Dna repair helicase uvh6 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RQC9_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 2.400e-27
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    7 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKV 79
            RA+E    ELCEFFEG+   G +A +P G+Y+L D+++FGREKGWCPYFLARH+I  +NV+VYNYQYMLDPKV
Sbjct:   69 RATENPDIELCEFFEGHEKAGGEALLPPGVYTLHDIRQFGREKGWCPYFLARHMIAFSNVIVYNYQYMLDPKV 141          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI2.240e-4090.67General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA4.860e-3379.10General transcription and DNA repair factor IIH he... [more]
A0A7S1UJA8_9STRA3.560e-3166.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2GG08_9STRA8.470e-3179.10DNA helicase (Fragment) n=1 Tax=Dictyocha speculum... [more]
A0A7S2D9H7_9STRA1.310e-3079.10General transcription and DNA repair factor IIH he... [more]
A0A7R9U4D1_9STRA1.310e-3069.33General transcription and DNA repair factor IIH he... [more]
K8YZX4_NANGC5.470e-2970.15General transcription and DNA repair factor IIH he... [more]
A0A1Y1HMG9_KLENI4.740e-2870.15General transcription and DNA repair factor IIH he... [more]
A0A7S3FSW1_9CHLO1.630e-2766.67General transcription and DNA repair factor IIH he... [more]
A0A061RQC9_9CHLO2.400e-2765.75Dna repair helicase uvh6 (Fragment) n=1 Tax=Tetras... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 7..85
e-value: 1.8E-12
score: 49.0
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 10..79
IPR010614DEAD2PFAMPF06733DEAD_2coord: 15..79
e-value: 6.8E-16
score: 58.4
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 10..79
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 1..87
score: 9.058

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10159contigL-elsbetiae_contig10159:5815..6780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10159.208.1mRNA_L-elsbetiae_contig10159.208.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10159 5815..6780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10159.208.1 ID=prot_L-elsbetiae_contig10159.208.1|Name=mRNA_L-elsbetiae_contig10159.208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
GGGGGGRASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKG
WCPYFLARHIINHANVLVYNYQYMLDPKVGGGGAADT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010614DEAD_2
IPR001945RAD3/XPD
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3