mRNA_L-elsbetiae_contig12583.2085.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12583.2085.1
Unique NamemRNA_L-elsbetiae_contig12583.2085.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A6H5KTD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.890e-18
Identity = 54/131 (41.22%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   58 GEALHAATRGGHRGVMNDLLENGASIAAKDAHSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRCGHSRGAVMHTAAQKGLVAVLRAVIERGADVNAVD 450
            G  + +A R GHR V+++LL++GAS+A+KD                 +VV+ LL++GAD D  +++G TPLYLA L G  A ARAL+ AGA +S      + A +  AA +G   V+R ++ERGA   AVD
Sbjct:   34 GNGVASAARNGHRRVISELLQHGASVASKDR----------------RVVRTLLIEGADPDSFDSNGRTPLYLACLLGKVAVARALLAAGAHVSRVVKEPKDAPLDAAATEGHAEVMRLLVERGAVEPAVD 148          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A194X1L2_9HELO (Ankyrin repeat protein (Fragment) n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194X1L2_9HELO)

HSP 1 Score: 75.9 bits (185), Expect = 1.550e-14
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   88 GHRGVMNDLLENGASIAAKDAHSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRCGHS--RGAVMHTAAQKGLVAVLRAVIERGADVNAVDTGVKTPLHLA 480
            G+ G +  LL  G++  A+   S  TPL HA      K V++LL  GA+++ + +DG  P+YLAA+  +    + L+  G D+++R      RG  +H A   G   V++ ++ +GA+VNAVD   KTPL  A
Sbjct:   10 GNDGEVEYLLSVGSNPNARGT-SQRTPLRHAIHHAREKSVRMLLEAGAEREAIFDDGLRPVYLAAICSNYKIMQMLLEGGIDVNVRAADKLRRGTPLHMAVLNGQATVVKLLLSKGAEVNAVDAFGKTPLDHA 141          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A3S0DE23_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A3S0DE23_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.480e-11
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  100 VMNDLLENGASIAAKDAHSAY--TPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRCGHS--------RGAVMHTAAQKGLVAVLRAVIERGADVNAVDTGVKTPLHLAA 483
            V+  L+E+GA  + +   S++  T LH A      K   LL  KGA K+VL+  G+TPL +A L GH    R+L+ AG D++++  ++        +   +H AA +G   ++   ++ G DVN+++   +TPLH AA
Sbjct:  138 VVKTLIEHGAIKSLEHRQSSFERTALHIAALFNHDKAAALLCEKGAQKNVLDIAGYTPLVIACLNGHIETVRSLVNAGVDLTIKIRNTDLSLADDDQPMAIHLAALQGAQKIVTIFLDAGQDVNSLNGWGQTPLHYAA 275          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A1L7X0Q7_9HELO (Uncharacterized protein n=1 Tax=Phialocephala subalpina TaxID=576137 RepID=A0A1L7X0Q7_9HELO)

HSP 1 Score: 70.5 bits (171), Expect = 4.110e-11
Identity = 54/161 (33.54%), Postives = 83/161 (51.55%), Query Frame = 1
Query:   34 LVGAGTDIGEALHA--------ATRGGHRGVMNDLLENGASIAAKDAHSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRCGHS--RGAVMHTAAQKGL--VAVLRAVIERGADVNAVDTGVKTPLHLA 480
            LV  G D+    H         A+  G+ G +  LL  GA+   KD ++  TPL +A        V++LL  GAD++ + +D   P++LAA+ G+    + L+    D ++R      RG  +H A +KG     V++ ++E+GADVNAVD   KTPL  A
Sbjct:  703 LVKYGADVNPTFHKLGWTPLLKASDMGNDGEVEFLLSVGANPNVKD-YAQRTPLRYAIHHARETSVRMLLDAGADREAIFDDDLRPVHLAAICGNYNIMQMLLEKDIDFNVRAADKLRRGTPLHMAVKKGQGQATVVKMLLEKGADVNAVDALGKTPLDHA 862          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A8J5K222_HOMAM (Ankyrin-3-like 4 n=2 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5K222_HOMAM)

HSP 1 Score: 70.1 bits (170), Expect = 5.440e-11
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  109 DLLENGASIAAKDAHSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRCGHSRGAVMHTAAQKGLVAVLRAVIERGADVNAVDTGVKTPLHLAAD 486
            + +  GA++  + A    TPLH A  RGE  ++ LLL    D +  ++DG+TPL +AAL G   A + LM  GA+  L    +    +H A       V+ A+++ GADVNA      TPLH+AA+
Sbjct:  271 EAVAAGANVNLQ-APGGNTPLHAAALRGEAPIILLLLTHDGDVNKADDDGFTPLMVAALNGRLDAVKDLMAGGANPKLTRLDTGETALHMAMISNSREVVTALLDAGADVNAQTKDKSTPLHVAAE 395          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A8C6TKC3_9GOBI (Ankyrin repeat and SOCS box containing 5a n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6TKC3_9GOBI)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-10
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  151 HSAY---TPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRCGHSRGAVMHTAAQKGLVAVLRAVIERGADVNAVDTGVKTPLHLA 480
            HS++   +PLH A  +G    V+ L+++G + +VL  D  TPL+ A L  H A ARAL+ AGA++    G S  + +H AA+K   AV++ +++ GAD+N  +   + P+ +A
Sbjct:   68 HSSWADRSPLHDAASQGRLLAVRTLIVQGHNVNVLTIDHVTPLHEACLGNHVACARALIEAGANVQK--GRSLDSPLHAAAEKDCTAVVKLLLDFGADINTRNMEYQRPVDVA 178          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A5N6JQ99_MONLA (Uncharacterized protein n=1 Tax=Monilinia laxa TaxID=61186 RepID=A0A5N6JQ99_MONLA)

HSP 1 Score: 67.4 bits (163), Expect = 4.830e-10
Identity = 46/145 (31.72%), Postives = 75/145 (51.72%), Query Frame = 1
Query:   58 GEALHAATRGGHRGVMNDLLENGASIAAKDAHSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRCG--HSRGAVMHTAAQKGLVAVLRAVIERGADVNAVDTGVKTPLHLAAD 486
            G  L  AT       +  LL  G +   +D+    TPL +A  + + + V LLL  GA ++++  DG +P++LAA+ G     + L+    D+++R    H     +H A QK    V++ ++ +GA VNAV+T  KT L LA +
Sbjct:  737 GTPLLQATEFARGAEVEFLLRKGGNPNVQDSRKR-TPLGNAIQQADEQSVLLLLDAGAHREMVCEDGLSPVHLAAMCGDYKIMQMLLIENTDVNIRASEKHQENTALHMAIQKQQGTVVKLLLSKGAGVNAVNTDDKTALDLAIE 880          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: UPI001EE53BFC (putative ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE53BFC)

HSP 1 Score: 67.0 bits (162), Expect = 6.050e-10
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   67 LHAATRGGHRGVMNDLLENG-ASIAAKDAHSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAG-ADISLRCGHSRGAVMHTAAQKGLVAVLRAVIERGADVNAVDTGVKTPLHLA 480
            LHAA  G +  ++ DLL  G A I ++D     TP  +AT++G  KVV LL+ KG +  V++N G   L++A L  +    + L++ G ADI  R    R  VM+ AA+KG   V+  ++ +G +++ VD      LH+A
Sbjct:  207 LHAACLGDNEDIVKDLLSRGIADIDSRDDRGK-TPAMYATEKGNKKVVDLLVSKGCNLSVVDNLGGNILHVACLGDNEDIVKDLLSRGIADIDSRDDRGRTPVMY-AAEKGNKKVVDLLVSKGCNLSVVDNLGGNILHVA 344          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM)

HSP 1 Score: 67.0 bits (162), Expect = 6.730e-10
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   67 LHAATRGGHRGVMNDLLENGASIAAKDAHSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAAAARALMTAG-ADISLRCGHSRGAVMHTAAQKGLVAVLRAVIERGADVNA-VDTGVKTPLHLA 480
            LH A           LL +G       A    T L+ A  +G  ++V+LLL KGAD  + + DG TPL++AA+      A AL+ +G  D+  R  HSR A ++ A +KG V +++ ++E+GAD N+ + +G  + LHLA
Sbjct:  924 LHNAAINNELACAEALLGSGKGDVDARAEHILTALNMAVIQGHVEMVKLLLEKGADATLADEDGNTPLHVAAIKNELVCAEALLASGKVDVDARGNHSRTA-LNMAVRKGHVEMVKLLLEKGADPNSEIFSG--SCLHLA 1060          
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Match: A0A553KRJ5_9BACL (Ankyrin repeat domain-containing protein n=2 Tax=Brevibacillus TaxID=55080 RepID=A0A553KRJ5_9BACL)

HSP 1 Score: 63.5 bits (153), Expect = 1.330e-9
Identity = 43/104 (41.35%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  178 ATDRGETKVVQLLLLK-GADKDVLNNDGWTPLYLAALWGHAAAARALMTAGADISLRC-GHSRGAVMHTAAQKGLVAVLRAVIERGADVNAVDTGVKTPLHLAA 483
            A   G+ K VQ  L   G+     + DGWT L+L A +GH  AA  L+  GAD  +R         +H A     VA  R ++ERGADVNAV +G  T LH AA
Sbjct:   10 AAMNGDAKSVQACLAADGSLAGAYSEDGWTALHLVAYFGHLEAALVLLDHGADPEVRSRNRMENTPLHAAVANRQVAAARLLLERGADVNAVQSGGWTALHEAA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12583.2085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTD7_9PHAE3.890e-1841.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A194X1L2_9HELO1.550e-1435.34Ankyrin repeat protein (Fragment) n=1 Tax=Mollisia... [more]
A0A3S0DE23_9BACT1.480e-1133.33Ankyrin repeat domain-containing protein n=1 Tax=C... [more]
A0A1L7X0Q7_9HELO4.110e-1133.54Uncharacterized protein n=1 Tax=Phialocephala suba... [more]
A0A8J5K222_HOMAM5.440e-1136.51Ankyrin-3-like 4 n=2 Tax=Homarus americanus TaxID=... [more]
A0A8C6TKC3_9GOBI1.020e-1036.28Ankyrin repeat and SOCS box containing 5a n=1 Tax=... [more]
A0A5N6JQ99_MONLA4.830e-1031.72Uncharacterized protein n=1 Tax=Monilinia laxa Tax... [more]
UPI001EE53BFC6.050e-1035.71putative ankyrin repeat protein RF_0381 n=1 Tax=Ha... [more]
A0L850_MAGMM6.730e-1035.71Ankyrin repeat-like protein n=1 Tax=Magnetococcus ... [more]
A0A553KRJ5_9BACL1.330e-941.35Ankyrin repeat domain-containing protein n=2 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12583contigL-elsbetiae_contig12583:2965..3453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score81.3
Seed ortholog evalue4.7e-13
Seed eggNOG ortholog69293.ENSGACP00000012637
Preferred nameASB16
KEGG koko:K10338
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.Ankyrin repeat and SOCS
EggNOG OGs38FN3@33154,3BJ06@33208,3CUBB@33213,481SR@7711,48XZ5@7742,49TEI@7898,COG0666@1,KOG0504@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size489
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.7818108-CDS-L-elsbetiae_contig12583:2964..34531622815449.7818108-CDS-L-elsbetiae_contig12583:2964..3453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12583 2965..3453 -
1691682903.974289-CDS-L-elsbetiae_contig12583:2964..34531691682903.974289-CDS-L-elsbetiae_contig12583:2964..3453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12583 2965..3453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12583.2085.1prot_L-elsbetiae_contig12583.2085.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12583 2965..3453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12583.2085.1

>prot_L-elsbetiae_contig12583.2085.1 ID=prot_L-elsbetiae_contig12583.2085.1|Name=mRNA_L-elsbetiae_contig12583.2085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MAKDIRSLAQKLVGAGTDIGEALHAATRGGHRGVMNDLLENGASIAAKDA
HSAYTPLHHATDRGETKVVQLLLLKGADKDVLNNDGWTPLYLAALWGHAA
AARALMTAGADISLRCGHSRGAVMHTAAQKGLVAVLRAVIERGADVNAVD
TGVKTPLHLAAD*
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mRNA from alignment at L-elsbetiae_contig12583:2965..3453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12583.2085.1 ID=mRNA_L-elsbetiae_contig12583.2085.1|Name=mRNA_L-elsbetiae_contig12583.2085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=489bp|location=Sequence derived from alignment at L-elsbetiae_contig12583:2965..3453- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAAGGACATCAGAAGCCTCGCACAGAAGCTGGTGGGGGCAGGGAC AGATATCGGGGAGGCACTACATGCAGCTACTCGGGGCGGCCATAGAGGTG TCATGAATGATCTGCTGGAGAATGGAGCATCTATCGCCGCCAAGGATGCG CATAGCGCCTACACTCCTCTCCACCATGCCACCGACCGAGGGGAAACGAA GGTGGTGCAGCTGCTGTTGCTCAAGGGGGCTGACAAAGATGTGCTGAACA ACGATGGGTGGACACCGCTCTATCTGGCCGCCTTGTGGGGTCATGCGGCT GCCGCACGAGCTCTCATGACTGCTGGCGCGGACATCAGCCTTCGGTGCGG CCACTCCAGGGGGGCGGTTATGCATACGGCGGCTCAGAAGGGTCTTGTTG CCGTCTTGAGGGCGGTGATCGAGCGTGGGGCGGACGTGAACGCTGTTGAT ACGGGCGTTAAAACACCCCTGCATCTTGCGGCAGATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12583:2965..3453-

>mRNA_L-elsbetiae_contig12583.2085.1 ID=mRNA_L-elsbetiae_contig12583.2085.1|Name=mRNA_L-elsbetiae_contig12583.2085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig12583:2965..3453- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAAGGACATCAGAAGCCTCGCACAGAAGCTGGTGGGGGCAGGGAC
AGATATCGGGGAGGCACTACATGCAGCTACTCGGGGCGGCCATAGAGGTG
TCATGAATGATCTGCTGGAGAATGGAGCATCTATCGCCGCCAAGGATGCG
CATAGCGCCTACACTCCTCTCCACCATGCCACCGACCGAGGGGAAACGAA
GGTGGTGCAGCTGCTGTTGCTCAAGGGGGCTGACAAAGATGTGCTGAACA
ACGATGGGTGGACACCGCTCTATCTGGCCGCCTTGTGGGGTCATGCGGCT
GCCGCACGAGCTCTCATGACTGCTGGCGCGGACATCAGCCTTCGGTGCGG
CCACTCCAGGGGGGCGGTTATGCATACGGCGGCTCAGAAGGGTCTTGTTG
CCGTCTTGAGGGCGGTGATCGAGCGTGGGGCGGACGTGAACGCTGTTGAT
ACGGGCGTTAAAACACCCCTGCATCTTGCGGCAGATTAAATGGCCAAGGA
CATCAGAAGCCTCGCACAGAAGCTGGTGGGGGCAGGGACAGATATCGGGG
AGGCACTACATGCAGCTACTCGGGGCGGCCATAGAGGTGTCATGAATGAT
CTGCTGGAGAATGGAGCATCTATCGCCGCCAAGGATGCGCATAGCGCCTA
CACTCCTCTCCACCATGCCACCGACCGAGGGGAAACGAAGGTGGTGCAGC
TGCTGTTGCTCAAGGGGGCTGACAAAGATGTGCTGAACAACGATGGGTGG
ACACCGCTCTATCTGGCCGCCTTGTGGGGTCATGCGGCTGCCGCACGAGC
TCTCATGACTGCTGGCGCGGACATCAGCCTTCGGTGCGGCCACTCCAGGG
GGGCGGTTATGCATACGGCGGCTCAGAAGGGTCTTGTTGCCGTCTTGAGG
GCGGTGATCGAGCGTGGGGCGGACGTGAACGCTGTTGATACGGGCGTTAA
AACACCCCTGCATCTTGCGGCAGATTAA
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