mRNA_L-elsbetiae_contig12581.2084.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig12581.2084.1
Unique Name	mRNA_L-elsbetiae_contig12581.2084.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: D7G1A4_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A4_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 1.480e-75
Identity = 334/722 (46.26%), Postives = 390/722 (54.02%), Query Frame = 1

Query:    1 DMGHSLLDLAAAQGYCDVIRSLLARGADVNKATPSGRTALHCAAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEEEDEGSVNHRYGVDEYSALDLAVRGDHTKIFQMILRHRAEVNAQDSDGVTXXXXXXXXXXXVMIDNLVEAGAVVGAQAHGRHNRTALHIACAEGSNTAAKALLVRGASIFKRDSLHRTPLHLAARNGDVATVETLLAWGSDPAFHSSSNIYHHSALDEAAYWGHVGALRAMCSSVPFASGRTGVNREIFDRIRKRDVLYSISTALSVAAARNQVGAIDALVGAGGANVNAGRGSRGTALHTVAFLGWTRAAKALLAAGANPSVRCYYHG-DQHTPLDIASEKGHVEMMREMIKCGVDVNGADPDKGTTALHVAAAFDQVAAIRVLAKAGCNLNALDNNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALNALRPHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLTDESWTSLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVGSMGGVDA---------------AVAVTTLLLRAPGDRAWRRR 2118
            D  HS+LD+AAAQGY + I+++LARGADVN ATP GRTALHCA+F      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASEE++ G V+ RYG DEYSALDLA  G H +I +M++RH  +VNA DSDGVT             ID LV+AGA V A++ GRH  +ALH+ACA GSN A  ALL   A +F RD+ + TPLHLA + G  +TVE LL WGSDP + S  +   +S LD AA  G++ AL+AMC+ +              D+ R  +   ++  AL  A   +QVGAI  LV  G A+V+   G +G                         + RC  +                                                                + L ++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  + + L                                  G                                                  HL DESWTSLH+AAEDTH EVVRVLL+H ADVHARDA+NDNDTPLHVAVRQAG++GA+EIV+ LL   ADE   ND+ LTP SVVGS   V                 A  V  LL RAP DRAWRRR
Sbjct:   23 DTRHSMLDMAAAQGYTEAIKTILARGADVNSATPDGRTALHCASFWDQAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHASEEDNAGFVDRRYGSDEYSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARSPGRHRWSALHVACAYGSNEAVSALLTHDALLFGRDASNHTPLHLAVQYGHDSTVEILLRWGSDPTYISCVSACRYSPLDVAASLGNMNALKAMCAHMR-------------DKARW-EFTRAVGDALYAAILSDQVGAIKWLVSVG-ASVSNTWGKKGGXXXXXXXXXXXXXXXXXXXXXXXXTDRCDENNRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADILGSSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPDRLAALEALLSAGADVALRVAGVPDDQPNALDLAAGAGHVDAITALIRAGAPVGARDGDGRTALICAVKSNKPRAVDALAEAGADVEAHLVDESWTSLHSAAEDTHLEVVRVLLKHRADVHARDADNDNDTPLHVAVRQAGVQGAVEIVQELLLHGADEGKKNDSGLTPASVVGSAAAVGLFDSVDPALLPVLELPAQVVAYLLARAPADRAWRRR 729

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.590e-13
Identity = 75/210 (35.71%), Postives = 100/210 (47.62%), Query Frame = 1

Query: 1801 TSLHAAAEDTHFEV--VRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVG---SMGGVDAAVAVTT-----LLLRAPGDRAWRRRGLLILCCARAKKTGSAAATRSSPEEGQGPRQRRSIQGGAGAARLNASGTGEGGKESETQDLAATTAAVNDNFDKVTAWLLELQEEGLFRIVVGF 2400
            T LH A +     +  +  LL  GAD+H  D    +DTPLH A +++ + G    VE LL R ADE   N+    P  +VG   S   VD  + V       +L RAP DR+WRRRGLL+L  +R+  T    A RSS     G  +      G  A    AS    GG   ET D          ++  +   L+EL+ +GLFR+VVGF
Sbjct:  188 TPLHVAVDRRVASIGTIGALLEGGADIHVFD--EIDDTPLHRACKRSSVTG----VELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVL--SRSCPTRVQIANRSSSGSSIGSSK------GCFAKVSPASRKNSGGDNEETGDQMVMV-----DWRYLVCRLIELEVDGLFRLVVGF 378

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: A0A6H5KCF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.150e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1

Query:    1 DMGHSLLDLAAAQGYCDVIRSLLARGADVNKATPSGRTALHCAAF 135
            D GHS+LD+AAAQGY + ++++LARGADVN ATP GRTALHCA+F
Sbjct:   23 DTGHSILDMAAAQGYTEAMKTILARGADVNSATPDGRTALHCASF 67

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.890e-12
Identity = 61/147 (41.50%), Postives = 74/147 (50.34%), Query Frame = 1

Query: 1789 DESWTSLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVGSMGGVDAAVA-------VTTLLLRAPGDRAWRRRGLLILCCARAKKTGSAAATRSSPEEGQGPR 2208
            D+    L A +   H E    L +HGA++ ARD   +  TPL +A RQAG +G   IV+ LL   ADE+A N +  T   VVG      A          V  LL  AP DRAWRRRGLL+LC A   K+    A  SS   G GPR
Sbjct:  220 DDCTPFLDACSNHCH-EAALALFKHGANIEARDMRGE--TPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRRLRAA-SSSARGIGPR 362

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.330e-11
Identity = 78/246 (31.71%), Postives = 100/246 (40.65%), Query Frame = 1

Query: 1804 SLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVA----------------------------------VRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVG---SMGGV---DAAVAVTTLLLRAPGDRAWRRRGLLILCCARAKKTGSAAATRSSPEEGQGPRQR------RSIQGGAGAARLNASGTGEGGKESETQDLAATTAAVNDNFDKVTAWLLELQEEGLFRIVVGFL 2403
            +LH A      + V+VLL  GAD+          TPLH+A                                     AG +G+ E+V+ LL R ADE+  + N   P   VG    +G V      V V  LL  AP DRAWRRRGLL+LC A  +++            G   R R      RS   GAG  R    GT EGG                D +   +  ++EL+EEG+FR VVGFL
Sbjct:  197 ALHLAVAFNKVKAVKVLLEAGADIQGHSFSRS--TPLHLASFKQPSVESAVXXXXXXXXXXXXXXXXXXXXXXAASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRR----GTPEGG--------------TGDEWRSASKRVVELEEEGIFRSVVGFL 422

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.830e-11
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 1

Query: 1801 TSLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNY-LTPVSVVGSMGGVDAAVAVTTL-----LLRAPGDRAWRRRGLLILC 2136
            T  HAAA   +FE    LL+HGAD++A        TPLH AV  AG EGA+E+V+ LL  +ADE A +D Y  TP ++V  M      + V        L  AP DRAWR RG+L+LC
Sbjct:  420 TPRHAAAGKLNFEATLALLKHGADMNALG--QTRWTPLHSAVHSAGDEGAVEVVDLLLRWNADE-ADDDTYGRTPRNLVVRMAPETDRMFVNVQRVWKPLQYAPQDRAWRHRGMLVLC 534

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.230e-10
Identity = 58/149 (38.93%), Postives = 74/149 (49.66%), Query Frame = 1

Query: 1801 TSLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVGSMGGVDAAVA-----VTTLLLRAPGDRAWRRRGLLILCCA--------------RAKKTGSAAATRSSPE 2190
            T LH A+++        LLRHGA V  ++A     TPLH+   +AG  G  E+V+ LL R ADE+A ++N  T   +V        ++A     V  LL RAP DRAWRRRG LIL  A              +A   G A  TRSS E
Sbjct:  591 TPLHVASQEGRLAAGIALLRHGASVGKKNAAAQ--TPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRSSEE 737

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.560e-10
Identity = 59/152 (38.82%), Postives = 77/152 (50.66%), Query Frame = 1

Query: 1789 DESWTSLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVGSMGGVDAAVA-------VTTLLLRAPGDRAWRRRGLLILCCA---RAKKTGSAAATRSSPEEGQGPRQR 2214
            D+    L A     H E    L +HG+++ ARD   +  TPL +A RQAG +G   IV+ LL   ADE+A N +  T   VVG      A          V  LL  AP DRAWRRRG L+LC A   +A++  +A++  SS     GPR R
Sbjct:  171 DDCTPFLDACINHCH-EAALALYKHGSNIEARDIRGE--TPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARRLRAASSNASS----NGPRVR 315

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.270e-10
Identity = 68/208 (32.69%), Postives = 92/208 (44.23%), Query Frame = 1

Query: 1798 WTSLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVGSMG------GVDAAVAVTTLLLRAPGDRAWRRRGLLILCCARAKKTGSAAATRSSPEEGQGPRQRRSIQGGAGAARLNASGTGEGGKESETQDLAATTAAVNDNFDKVTAWLLELQEEGLFRIVVGFL 2403
            WT LHAAAE      V  LL++ A V  R  +   DTPLH A  +   EG    ++ LL   ADE+A N    TP+ V+G+          D       LL+RAP DR WRRRG L++  +R        A  +S       + RR+ +G    AR++ +G   G                      V   L EL+ E +FR V+GFL
Sbjct:  309 WTPLHAAAEHHRVNCVAALLQNNASVRNR-FDATGDTPLHRACVEQ-REGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTIVVAHRCAKGASDSGLSLCQARRNGKG----ARIDVAGNSSG----------------------VVELLTELEPEAVFRSVLGFL 488

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BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.380e-9
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 1

Query: 1801 TSLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGALEIVEALLGRDADESAHNDNYLTPVSVVGSMG-----GVDAAVAVTTLLLRAPGDRAWRRRGLLILCCARAKKTGSAAATR 2178
            T L AAAE    E +RVLLR+GAD +  D  ++   PLH+A  +    G +E+V+ LL   A E+A N +  TP  V   +        +       LL RAP DRAWRRRG +++  AR++    AA  R
Sbjct:  241 TPLLAAAESMSNEALRVLLRNGADPNKPD--DNGSMPLHLAAHEQ-TPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIAAQRR 368

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig12581.2084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1A4_ECTSI	1.480e-75	46.26	Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si...	[more]
D8LTL5_ECTSI	9.590e-13	35.71	MHC_I C-terminus family protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KCF2_9PHAE	2.150e-12	71.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNU3_9PHAE	9.890e-12	41.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FYD0_ECTSI	2.330e-11	31.71	Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28...	[more]
A0A6H5JBC2_9PHAE	6.830e-11	44.92	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JHY9_9PHAE	1.230e-10	38.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6X8_ECTSI	2.560e-10	38.82	Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo...	[more]
D7FLL7_ECTSI	5.270e-10	32.69	Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo...	[more]
D7FSI6_ECTSI	1.380e-9	38.17	Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig12581	contig	L-elsbetiae_contig12581:1099..3639 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	287.0
Seed ortholog evalue	2.8e-74
Seed eggNOG ortholog	2880.D7G1A4
Hectar predicted targeting category	other localisation
EggNOG free text desc.	response to abiotic stimulus
EggNOG OGs	COG0666@1,KOG4177@2759
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-12_005230.1
Exons	2
Model size	2406
Cds size	2403
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig12581.2084.1	prot_L-elsbetiae_contig12581.2084.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig12581 1099..3636 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815449.7339518-CDS-L-elsbetiae_contig12581:1098..2419	1622815449.7339518-CDS-L-elsbetiae_contig12581:1098..2419	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12581 1099..2419 -
1691682903.943583-CDS-L-elsbetiae_contig12581:1098..2419	1691682903.943583-CDS-L-elsbetiae_contig12581:1098..2419	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12581 1099..2419 -
1622815449.7434814-CDS-L-elsbetiae_contig12581:2554..3636	1622815449.7434814-CDS-L-elsbetiae_contig12581:2554..3636	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12581 2555..3636 -
1691682903.9536426-CDS-L-elsbetiae_contig12581:2554..3636	1691682903.9536426-CDS-L-elsbetiae_contig12581:2554..3636	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12581 2555..3636 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815449.7529945-UTR-L-elsbetiae_contig12581:3636..3639	1622815449.7529945-UTR-L-elsbetiae_contig12581:3636..3639	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig12581 3637..3639 -
1691682903.963629-UTR-L-elsbetiae_contig12581:3636..3639	1691682903.963629-UTR-L-elsbetiae_contig12581:3636..3639	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig12581 3637..3639 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig12581:1099..3639-
coding sequence from alignment at L-elsbetiae_contig12581:1099..3639-

protein sequence of mRNA_L-elsbetiae_contig12581.2084.1

>prot_L-elsbetiae_contig12581.2084.1 ID=prot_L-elsbetiae_contig12581.2084.1|Name=mRNA_L-elsbetiae_contig12581.2084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=801bp
MGHSLLDLAAAQGYCDVIRSLLARGADVNKATPSGRTALHCAAFRDQAAA
VDTLIANGARIEAADDQGCTPLHVASANGASEAIISLLHHGAVANKLNSD
GRPPLLLAVENGRLAAATLLLHASEEEDEGSVNHRYGVDEYSALDLAVRG
DHTKIFQMILRHRAEVNAQDSDGVTALDLAALNDHPVMIDNLVEAGAVVG
AQAHGRHNRTALHIACAEGSNTAAKALLVRGASIFKRDSLHRTPLHLAAR
NGDVATVETLLAWGSDPAFHSSSNIYHHSALDEAAYWGHVGALRAMCSSV
PFASGRTGVNREIFDRIRKRDVLYSISTALSVAAARNQVGAIDALVGAGG
ANVNAGRGSRGTALHTVAFLGWTRAAKALLAAGANPSVRCYYHGDQHTPL
DIASEKGHVEMMREMIKCGVDVNGADPDKGTTALHVAAAFDQVAAIRVLA
KAGCNLNALDNNGCTPLHAYSLNAYWRAVATLAVAGADVNRVNNEGKPPL
HLALNALRPHLDAVKALLAAGAETTARNNEDTSALDLAAKAGHVAVIRVL
IEAGAPVDAEDGDGRTALMHAVKANNADAVDVLLSAGADVEAHLTDESWT
SLHAAAEDTHFEVVRVLLRHGADVHARDAENDNDTPLHVAVRQAGMEGAL
EIVEALLGRDADESAHNDNYLTPVSVVGSMGGVDAAVAVTTLLLRAPGDR
AWRRRGLLILCCARAKKTGSAAATRSSPEEGQGPRQRRSIQGGAGAARLN
ASGTGEGGKESETQDLAATTAAVNDNFDKVTAWLLELQEEGLFRIVVGFL
*

mRNA from alignment at L-elsbetiae_contig12581:1099..3639-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig12581.2084.1 ID=mRNA_L-elsbetiae_contig12581.2084.1|Name=mRNA_L-elsbetiae_contig12581.2084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2541bp|location=Sequence derived from alignment at L-elsbetiae_contig12581:1099..3639- (Laminarionema elsbetiae ELsaHSoW15)
GACATGGGACATTCACTGTTGGATTTGGCCGCTGCACAGGGCTACTGTGA
TGTAATCCGATCACTCCTGGCGCGCGGGGCTGACGTGAACAAAGCCACGC
CTAGTGGCAGGACTGCCCTCCACTGTGCAGCATTCAGAGACCAGGCCGCC
GCAGTGGATACTCTTATCGCCAACGGGGCTCGTATCGAAGCCGCCGACGA
CCAGGGTTGTACACCTCTCCACGTAGCGTCCGCGAACGGCGCTTCCGAGG
CCATAATTTCTCTCTTGCACCACGGGGCAGTCGCGAACAAGTTGAACAGC
GACGGTCGCCCTCCTCTACTGCTGGCGGTGGAAAACGGCCGCCTCGCCGC
GGCCACGCTTCTCCTTCACGCCTCGGAGGAAGAGGACGAAGGCTCTGTCA
ACCATCGGTACGGCGTCGACGAGTACTCTGCGCTCGACCTGGCTGTTCGA
GGAGACCACACTAAGATATTCCAGATGATCCTCCGGCATAGGGCCGAGGT
TAACGCTCAGGACTCGGACGGGGTCACTGCTCTCGATCTCGCCGCTCTCA
ATGATCACCCCGTGATGATCGACAACCTCGTCGAGGCCGGGGCCGTCGTT
GGAGCCCAAGCCCACGGCCGCCACAACCGAACGGCCCTTCACATTGCTTG
CGCGGAAGGCTCCAACACTGCGGCTAAGGCCTTGCTTGTGCGAGGGGCGT
CGATTTTCAAGCGCGACTCCCTCCACCGCACGCCCCTTCATCTCGCAGCT
CGGAACGGTGATGTAGCCACGGTGGAAACTCTTTTGGCGTGGGGCTCGGA
TCCCGCCTTTCACTCCAGCTCAAATATATACCACCACTCGGCGCTGGATG
AGGCCGCTTATTGGGGACACGTGGGTGCGCTGAGGGCGATGTGCAGCTCT
GTGCCATTCGCGAGCGGGAGAACGGGCGTAAATCGTGAAATTTTCGATCG
CATCAGGAAGAGGGACGTGCTGTATTCGATCTCAACTGCTCTCAGCGTCG
CGGCGGCGCGGAATCAAGTCGGCGCCATCGATGCCCTTGTTGGCGCTGGG
GGCGCCAACGTAAATGCGGGGCGAGGGTCGCGCGGGTTGGGCGGGACCCC
CATCCATTATGCTGCGGAAACTGGGGCCTTCGATGCCATTGCAGCTCTCG
CGCGGCACGGCGCCAACCTCAACGATTTGGGGGGCGAACTCGGCTGCAAC
GAGTTCGACGGCAAACCCAGAACCGCCCTCCATACCGTGGCCTTCTTGGG
CTGGACGAGAGCGGCGAAAGCTCTCCTGGCAGCTGGCGCCAATCCCAGCG
TTCGCTGTTACTACCACGGCGATCAGCACACGCCGCTTGACATCGCGAGC
GAAAAGGGGCACGTGGAAATGATGCGAGAGATGATCAAGTGCGGCGTGGA
CGTGAATGGCGCTGATCCCGACAAGGGAACGACGGCTCTGCACGTAGCAG
CGGCATTCGACCAGGTAGCAGCGATTCGGGTGCTGGCCAAGGCCGGTTGC
AACCTAAACGCTCTGGACAACAACGGCTGCACCCCGCTTCACGCCTACTC
CCTAAACGCCTACTGGCGGGCAGTCGCCACCCTTGCGGTCGCCGGTGCAG
ATGTCAACAGAGTGAACAACGAAGGGAAGCCACCGCTACATCTGGCCTTG
AACGCCCTTCGCCCCCATCTCGACGCGGTCAAGGCTCTTCTGGCCGCCGG
CGCAGAAACCACCGCGCGTAACAACGAGGACACTTCCGCGCTGGACCTGG
CCGCCAAAGCAGGCCACGTCGCCGTCATTCGAGTGCTCATCGAGGCCGGT
GCGCCCGTGGACGCCGAGGACGGCGACGGCAGGACGGCGCTCATGCACGC
CGTGAAGGCGAACAACGCGGACGCGGTCGACGTCCTCCTCTCCGCCGGGG
CCGACGTGGAGGCCCACCTCACCGACGAGAGCTGGACCTCTCTCCACGCC
GCCGCGGAAGACACCCACTTCGAGGTCGTGCGAGTGCTGCTCAGGCACGG
CGCCGACGTCCACGCGAGGGACGCCGAGAACGACAACGACACCCCCCTGC
ACGTCGCCGTGCGGCAGGCCGGGATGGAGGGCGCCCTCGAGATCGTCGAG
GCCCTCCTGGGGCGCGACGCCGACGAGTCAGCGCACAACGACAACTACCT
CACCCCCGTGAGCGTGGTCGGGTCGATGGGGGGGGTGGACGCCGCCGTCG
CCGTGACGACGCTGCTCCTGCGCGCGCCGGGGGACCGGGCGTGGCGCCGC
CGGGGCTTGCTCATCCTCTGCTGCGCTCGCGCGAAGAAGACGGGCTCAGC
CGCCGCCACGAGGTCTTCGCCGGAAGAGGGGCAAGGACCAAGACAACGAA
GAAGCATTCAGGGGGGGGCGGGAGCAGCAAGGTTGAACGCCAGCGGCACG
GGGGAGGGGGGCAAAGAGAGCGAAACCCAGGACCTGGCAGCGACGACCGC
TGCCGTCAACGACAACTTCGACAAGGTGACAGCGTGGCTGCTCGAGCTGC
AGGAGGAAGGACTGTTTCGGATCGTCGTGGGCTTCTTGTGA

Coding sequence (CDS) from alignment at L-elsbetiae_contig12581:1099..3639-

>mRNA_L-elsbetiae_contig12581.2084.1 ID=mRNA_L-elsbetiae_contig12581.2084.1|Name=mRNA_L-elsbetiae_contig12581.2084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4806bp|location=Sequence derived from alignment at L-elsbetiae_contig12581:1099..3639- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACATTCACTGTTGGATTTGGCCGCTGCACAGGGCTACTGTGATGT
AATCCGATCACTCCTGGCGCGCGGGGCTGACGTGAACAAAGCCACGCCTA
GTGGCAGGACTGCCCTCCACTGTGCAGCATTCAGAGACCAGGCCGCCGCA
GTGGATACTCTTATCGCCAACGGGGCTCGTATCGAAGCCGCCGACGACCA
GGGTTGTACACCTCTCCACGTAGCGTCCGCGAACGGCGCTTCCGAGGCCA
TAATTTCTCTCTTGCACCACGGGGCAGTCGCGAACAAGTTGAACAGCGAC
GGTCGCCCTCCTCTACTGCTGGCGGTGGAAAACGGCCGCCTCGCCGCGGC
CACGCTTCTCCTTCACGCCTCGGAGGAAGAGGACGAAGGCTCTGTCAACC
ATCGGTACGGCGTCGACGAGTACTCTGCGCTCGACCTGGCTGTTCGAGGA
GACCACACTAAGATATTCCAGATGATCCTCCGGCATAGGGCCGAGGTTAA
CGCTCAGGACTCGGACGGGGTCACTGCTCTCGATCTCGCCGCTCTCAATG
ATCACCCCGTGATGATCGACAACCTCGTCGAGGCCGGGGCCGTCGTTGGA
GCCCAAGCCCACGGCCGCCACAACCGAACGGCCCTTCACATTGCTTGCGC
GGAAGGCTCCAACACTGCGGCTAAGGCCTTGCTTGTGCGAGGGGCGTCGA
TTTTCAAGCGCGACTCCCTCCACCGCACGCCCCTTCATCTCGCAGCTCGG
AACGGTGATGTAGCCACGGTGGAAACTCTTTTGGCGTGGGGCTCGGATCC
CGCCTTTCACTCCAGCTCAAATATATACCACCACTCGGCGCTGGATGAGG
CCGCTTATTGGGGACACGTGGGTGCGCTGAGGGCGATGTGCAGCTCTGTG
CCATTCGCGAGCGGGAGAACGGGCGTAAATCGTGAAATTTTCGATCGCAT
CAGGAAGAGGGACGTGCTGTATTCGATCTCAACTGCTCTCAGCGTCGCGG
CGGCGCGGAATCAAGTCGGCGCCATCGATGCCCTTGTTGGCGCTGGGGGC
GCCAACGTAAATGCGGGGCGAGGGTCGCGCGGATGGGACATTCACTGTTG
GATTTGGCCGCTGCACAGGGCTACTGTGATGTAATCCGATCACTCCTGGC
GCGCGGGGCTGACGTGAACAAAGCCACGCCTAGTGGCAGGACTGCCCTCC
ACTGTGCAGCATTCAGAGACCAGGCCGCCGCAGTGGATACTCTTATCGCC
AACGGGGCTCGTATCGAAGCCGCCGACGACCAGGGTTGTACACCTCTCCA
CGTAGCGTCCGCGAACGGCGCTTCCGAGGCCATAATTTCTCTCTTGCACC
ACGGGGCAGTCGCGAACAAGTTGAACAGCGACGGTCGCCCTCCTCTACTG
CTGGCGGTGGAAAACGGCCGCCTCGCCGCGGCCACGCTTCTCCTTCACGC
CTCGGAGGAAGAGGACGAAGGCTCTGTCAACCATCGGTACGGCGTCGACG
AGTACTCTGCGCTCGACCTGGCTGTTCGAGGAGACCACACTAAGATATTC
CAGATGATCCTCCGGCATAGGGCCGAGGTTAACGCTCAGGACTCGGACGG
GGTCACTGCTCTCGATCTCGCCGCTCTCAATGATCACCCCGTGATGATCG
ACAACCTCGTCGAGGCCGGGGCCGTCGTTGGAGCCCAAGCCCACGGCCGC
CACAACCGAACGGCCCTTCACATTGCTTGCGCGGAAGGCTCCAACACTGC
GGCTAAGGCCTTGCTTGTGCGAGGGGCGTCGATTTTCAAGCGCGACTCCC
TCCACCGCACGCCCCTTCATCTCGCAGCTCGGAACGGTGATGTAGCCACG
GTGGAAACTCTTTTGGCGTGGGGCTCGGATCCCGCCTTTCACTCCAGCTC
AAATATATACCACCACTCGGCGCTGGATGAGGCCGCTTATTGGGGACACG
TGGGTGCGCTGAGGGCGATGTGCAGCTCTGTGCCATTCGCGAGCGGGAGA
ACGGGCGTAAATCGTGAAATTTTCGATCGCATCAGGAAGAGGGACGTGCT
GTATTCGATCTCAACTGCTCTCAGCGTCGCGGCGGCGCGGAATCAAGTCG
GCGCCATCGATGCCCTTGTTGGCGCTGGGGGCGCCAACGTAAATGCGGGG
CGAGGGTCGCGCGGAACCGCCCTCCATACCGTGGCCTTCTTGGGCTGGAC
GAGAGCGGCGAAAGCTCTCCTGGCAGCTGGCGCCAATCCCAGCGTTCGCT
GTTACTACCACGGCGATCAGCACACGCCGCTTGACATCGCGAGCGAAAAG
GGGCACGTGGAAATGATGCGAGAGATGATCAAGTGCGGCGTGGACGTGAA
TGGCGCTGATCCCGACAAGGGAACGACGGCTCTGCACGTAGCAGCGGCAT
TCGACCAGGTAGCAGCGATTCGGGTGCTGGCCAAGGCCGGTTGCAACCTA
AACGCTCTGGACAACAACGGCTGCACCCCGCTTCACGCCTACTCCCTAAA
CGCCTACTGGCGGGCAGTCGCCACCCTTGCGGTCGCCGGTGCAGATGTCA
ACAGAGTGAACAACGAAGGGAAGCCACCGCTACATCTGGCCTTGAACGCC
CTTCGCCCCCATCTCGACGCGGTCAAGGCTCTTCTGGCCGCCGGCGCAGA
AACCACCGCGCGTAACAACGAGGACACTTCCGCGCTGGACCTGGCCGCCA
AAGCAGGCCACGTCGCCGTCATTCGAGTGCTCATCGAGGCCGGTGCGCCC
GTGGACGCCGAGGACGGCGACGGCAGGACGGCGCTCATGCACGCCGTGAA
GGCGAACAACGCGGACGCGGTCGACGTCCTCCTCTCCGCCGGGGCCGACG
TGGAGGCCCACCTCACCGACGAGAGCTGGACCTCTCTCCACGCCGCCGCG
GAAGACACCCACTTCGAGGTCGTGCGAGTGCTGCTCAGGCACGGCGCCGA
CGTCCACGCGAGGGACGCCGAGAACGACAACGACACCCCCCTGCACGTCG
CCGTGCGGCAGGCCGGGATGGAGGGCGCCCTCGAGATCGTCGAGGCCCTC
CTGGGGCGCGACGCCGACGAGTCAGCGCACAACGACAACTACCTCACCCC
CGTGAGCGTGGTCGGGTCGATGGGGGGGGTGGACGCCGCCGTCGCCGTGA
CGACGCTGCTCCTGCGCGCGCCGGGGGACCGGGCGTGGCGCCGCCGGGGC
TTGCTCATCCTCTGCTGCGCTCGCGCGAAGAAGACGGGCTCAGCCGCCGC
CACGAGGTCTTCGCCGGAAGAGGGGCAAGGACCAAGACAACGAAGAAGCA
TTCAGGGGGGGGCGGGAGCAGCAAGGTTGAACGCCAGCGGCACGGGGGAG
GGGGGCAAAGAGAGCGAAACCCAGGACCTGGCAGCGACGACCGCTGCCGT
CAACGACAACTTCGACAAGGTGACAGCGTGGCTGCTCGAGCTGCAGGAGG
AAGGACTGTTTCGGATCGTCGTGGGCTTCTTGTGAAACCGCCCTCCATAC
CGTGGCCTTCTTGGGCTGGACGAGAGCGGCGAAAGCTCTCCTGGCAGCTG
GCGCCAATCCCAGCGTTCGCTGTTACTACCACGGCGATCAGCACACGCCG
CTTGACATCGCGAGCGAAAAGGGGCACGTGGAAATGATGCGAGAGATGAT
CAAGTGCGGCGTGGACGTGAATGGCGCTGATCCCGACAAGGGAACGACGG
CTCTGCACGTAGCAGCGGCATTCGACCAGGTAGCAGCGATTCGGGTGCTG
GCCAAGGCCGGTTGCAACCTAAACGCTCTGGACAACAACGGCTGCACCCC
GCTTCACGCCTACTCCCTAAACGCCTACTGGCGGGCAGTCGCCACCCTTG
CGGTCGCCGGTGCAGATGTCAACAGAGTGAACAACGAAGGGAAGCCACCG
CTACATCTGGCCTTGAACGCCCTTCGCCCCCATCTCGACGCGGTCAAGGC
TCTTCTGGCCGCCGGCGCAGAAACCACCGCGCGTAACAACGAGGACACTT
CCGCGCTGGACCTGGCCGCCAAAGCAGGCCACGTCGCCGTCATTCGAGTG
CTCATCGAGGCCGGTGCGCCCGTGGACGCCGAGGACGGCGACGGCAGGAC
GGCGCTCATGCACGCCGTGAAGGCGAACAACGCGGACGCGGTCGACGTCC
TCCTCTCCGCCGGGGCCGACGTGGAGGCCCACCTCACCGACGAGAGCTGG
ACCTCTCTCCACGCCGCCGCGGAAGACACCCACTTCGAGGTCGTGCGAGT
GCTGCTCAGGCACGGCGCCGACGTCCACGCGAGGGACGCCGAGAACGACA
ACGACACCCCCCTGCACGTCGCCGTGCGGCAGGCCGGGATGGAGGGCGCC
CTCGAGATCGTCGAGGCCCTCCTGGGGCGCGACGCCGACGAGTCAGCGCA
CAACGACAACTACCTCACCCCCGTGAGCGTGGTCGGGTCGATGGGGGGGG
TGGACGCCGCCGTCGCCGTGACGACGCTGCTCCTGCGCGCGCCGGGGGAC
CGGGCGTGGCGCCGCCGGGGCTTGCTCATCCTCTGCTGCGCTCGCGCGAA
GAAGACGGGCTCAGCCGCCGCCACGAGGTCTTCGCCGGAAGAGGGGCAAG
GACCAAGACAACGAAGAAGCATTCAGGGGGGGGCGGGAGCAGCAAGGTTG
AACGCCAGCGGCACGGGGGAGGGGGGCAAAGAGAGCGAAACCCAGGACCT
GGCAGCGACGACCGCTGCCGTCAACGACAACTTCGACAAGGTGACAGCGT
GGCTGCTCGAGCTGCAGGAGGAAGGACTGTTTCGGATCGTCGTGGGCTTC
TTGTGA