mRNA_L-elsbetiae_contig1258.2082.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1258.2082.1
Unique NamemRNA_L-elsbetiae_contig1258.2082.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1258.2082.1 vs. uniprot
Match: A0A6H5JY39_9PHAE (Ion_trans_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY39_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.420e-32
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   13 VFNQPSIMGDLLPHIQNQAFCFLWRSLMPKLPFFCAMEDQVTGFMRVVLPLLKPATFALG 192
            VFNQPSI+GDLLPH+QNQA+ FLWRSLMPKLPF CAMEDQVTGF+RVVLPLLKPATFALG
Sbjct:  159 VFNQPSILGDLLPHLQNQAYMFLWRSLMPKLPFLCAMEDQVTGFVRVVLPLLKPATFALG 218
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1258.2082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY39_9PHAE2.420e-3290.00Ion_trans_2 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1258contigL-elsbetiae_contig1258:14470..15318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size193
Cds size192
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1258.2082.1prot_L-elsbetiae_contig1258.2082.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1258 14470..15318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.4116292-CDS-L-elsbetiae_contig1258:14469..145291622815449.4116292-CDS-L-elsbetiae_contig1258:14469..14529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14470..14529 -
1691682903.8031273-CDS-L-elsbetiae_contig1258:14469..145291691682903.8031273-CDS-L-elsbetiae_contig1258:14469..14529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14470..14529 -
1622815449.4527185-CDS-L-elsbetiae_contig1258:14830..148961622815449.4527185-CDS-L-elsbetiae_contig1258:14830..14896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14831..14896 -
1691682903.8132777-CDS-L-elsbetiae_contig1258:14830..148961691682903.8132777-CDS-L-elsbetiae_contig1258:14830..14896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14831..14896 -
1622815449.4653685-CDS-L-elsbetiae_contig1258:15252..153181622815449.4653685-CDS-L-elsbetiae_contig1258:15252..15318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 15253..15318 -
1691682903.8250399-CDS-L-elsbetiae_contig1258:15252..153181691682903.8250399-CDS-L-elsbetiae_contig1258:15252..15318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 15253..15318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1258.2082.1

>prot_L-elsbetiae_contig1258.2082.1 ID=prot_L-elsbetiae_contig1258.2082.1|Name=mRNA_L-elsbetiae_contig1258.2082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
QVHSVFNQPSIMGDLLPHIQNQAFCFLWRSLMPKLPFFCAMEDQVTGFMR
VVLPLLKPATFALG
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mRNA from alignment at L-elsbetiae_contig1258:14470..15318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1258.2082.1 ID=mRNA_L-elsbetiae_contig1258.2082.1|Name=mRNA_L-elsbetiae_contig1258.2082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=849bp|location=Sequence derived from alignment at L-elsbetiae_contig1258:14470..15318- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTCATAGCGTGTTCAACCAGCCATCGATTATGGGAGACCTCCTGCC
TCACATCCAAAATCAGGTAGGTATGAGAAGGCCAGACGGTACTTCTGCTG
CCAGACTTTACTGATTTCTGTTTCCAAGAAAGTCAGCGGTCTATTTCTAA
CCAAACCATCATCTGGTGCATCATGAGAGTCATGGAAGTTTACCCTCGTT
CTCTCCTGCAACGAAACGAAGTATATTTTGCCACTCAAGGTCAGTATTTA
TAGGTTAATTCCCTGAAAACTGTTTCTTGCCGGGATGCACTACCCCGAAG
ACCCGAGCCGATGTATATATAAAGTTGAACTATGGCATACAGGCATGATT
GTACCTCTTGAATCTTGCATGCCCCCTTCTCTCGTCCACCCCCCTGCCGC
TTGTGTGTTGCCTTGTATGCAGGCTTTCTGTTTTTTGTGGCGATCATTAA
TGCCAAAGCTACCGTTTTTTTGCGCCATGGAAGACCAGGTGAGTAGGGAC
ATTTTTGACGAAGTAGAATTGTGTGACCATAGCTATAGCCTAATTCGAGC
AATACATGCACTGGTCAAGCGAAGCTCGACATGACGATTGTTCTGTTCAA
AACGAGCTCAGCGGCCAGTCGCCAGAATGTGCAAGGCATCAACCGTTGGG
GCCCCCATTCCCATCCCTATCCAGCACCCCCCCGCTCCTCCTCGTTGTGA
TTATTTTGCCCCAACGTTTGCACTCACGTCCTACGACTCCCATGGGCCCA
ATCCACCACCGACACCCACTATTCGTTAACCCACCTCAGGTAACCGGCTT
TATGAGAGTGGTCCTCCCCCTTCTAAAACCCGCCACGTTTGCTCTTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1258:14470..15318-

>mRNA_L-elsbetiae_contig1258.2082.1 ID=mRNA_L-elsbetiae_contig1258.2082.1|Name=mRNA_L-elsbetiae_contig1258.2082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig1258:14470..15318- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTCATAGCGTGTTCAACCAGCCATCGATTATGGGAGACCTCCTGCC
TCACATCCAAAATCAGCAGGTTCATAGCGTGTTCAACCAGCCATCGATTA
TGGGAGACCTCCTGCCTCACATCCAAAATCAGGCTTTCTGTTTTTTGTGG
CGATCATTAATGCCAAAGCTACCGTTTTTTTGCGCCATGGAAGACCAGGC
TTTCTGTTTTTTGTGGCGATCATTAATGCCAAAGCTACCGTTTTTTTGCG
CCATGGAAGACCAGGTAACCGGCTTTATGAGAGTGGTCCTCCCCCTTCTA
AAACCCGCCACGTTTGCTCTTGGTGTAACCGGCTTTATGAGAGTGGTCCT
CCCCCTTCTAAAACCCGCCACGTTTGCTCTTGGT
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