mRNA_L-elsbetiae_contig1258.2081.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1258.2081.1
Unique NamemRNA_L-elsbetiae_contig1258.2081.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1258.2081.1 vs. uniprot
Match: A0A6H5JY39_9PHAE (Ion_trans_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY39_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.680e-16
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QVTGFMRVVLPLLKPATFALGEIIVTPKVGIREMGFIMSGEVEVR 135
            QVTGF+RVVLPLLKPATFALGE+IVTPK+G REMGFI+ GEVEV+
Sbjct:  198 QVTGFVRVVLPLLKPATFALGEVIVTPKIGTREMGFIICGEVEVK 242
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BLAST of mRNA_L-elsbetiae_contig1258.2081.1 vs. uniprot
Match: D8LFK4_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.190e-15
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QVTGFMRVVLPLLKPATFALGEIIVTPKVGIREMGFIMSGEVEVR 135
            QVTGF+RVVLPLLKPATFA+GE+IVTPK+G REMGFI+ GEVEV+
Sbjct: 1161 QVTGFVRVVLPLLKPATFAVGEVIVTPKIGTREMGFIICGEVEVK 1205
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1258.2081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JY39_9PHAE2.680e-1684.44Ion_trans_2 domain-containing protein n=1 Tax=Ecto... [more]
D8LFK4_ECTSI2.190e-1582.22Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1258contigL-elsbetiae_contig1258:14027..14532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue6.3e-09
Seed eggNOG ortholog2880.D8LFK4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-04_001880.1
Exons2
Model size212
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1258.2081.1prot_L-elsbetiae_contig1258.2081.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1258 14027..14517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.3486276-CDS-L-elsbetiae_contig1258:14026..141071622815449.3486276-CDS-L-elsbetiae_contig1258:14026..14107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14027..14107 -
1691682903.7686992-CDS-L-elsbetiae_contig1258:14026..141071691682903.7686992-CDS-L-elsbetiae_contig1258:14026..14107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14027..14107 -
1622815449.359709-CDS-L-elsbetiae_contig1258:14403..145171622815449.359709-CDS-L-elsbetiae_contig1258:14403..14517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14404..14517 -
1691682903.7817647-CDS-L-elsbetiae_contig1258:14403..145171691682903.7817647-CDS-L-elsbetiae_contig1258:14403..14517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1258 14404..14517 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.371777-UTR-L-elsbetiae_contig1258:14517..145321622815449.371777-UTR-L-elsbetiae_contig1258:14517..14532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1258 14518..14532 -
1691682903.794299-UTR-L-elsbetiae_contig1258:14517..145321691682903.794299-UTR-L-elsbetiae_contig1258:14517..14532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1258 14518..14532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1258.2081.1

>prot_L-elsbetiae_contig1258.2081.1 ID=prot_L-elsbetiae_contig1258.2081.1|Name=mRNA_L-elsbetiae_contig1258.2081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MRVVLPLLKPATFALGEIIVTPKVGIREMGFIMSGEVEVRLAKGRRNFKT
MTMGERRHFGEMFML
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mRNA from alignment at L-elsbetiae_contig1258:14027..14532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1258.2081.1 ID=mRNA_L-elsbetiae_contig1258.2081.1|Name=mRNA_L-elsbetiae_contig1258.2081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=506bp|location=Sequence derived from alignment at L-elsbetiae_contig1258:14027..14532- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTAACCGGCTTTATGAGAGTGGTCCTCCCCCTTCTAAAACCCGCCAC
GTTTGCTCTTGGTGAGATTATCGTCACTCCGAAGGTCGGCATAAGAGAGA
TGGGGTTCATCATGAGCGGAGAGGTCGAGGTAAATTGCCACACGATGTCA
CCTTCTGGTCATCCATACTACTTGTCATGGCTGACTTCTTGTCAACATCG
TGTTCCTGTTAATATCTAATGGACCATACTAGGCTGGTTAGAAGCCACTG
AAAGATGTATCAGTGCAACAGGCCGGCGAAAGCCTGCCACCCCCCCAAAA
AAGGTTGGACAAAACGATCTCCGTATCCTAGCTTATCGCTTAATGGGGAA
CATCCAGGCCTCTTGAAATCGCACGGGACCACTCCGAGATTTGACTACCT
CCTTCTACATCTATTTCTCGTTCAGGTTCGACTAGCCAAGGGCAGACGAA
ACTTCAAGACGATGACCATGGGCGAACGGCGACACTTCGGGGAGATGTTC
ATGCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1258:14027..14532-

>mRNA_L-elsbetiae_contig1258.2081.1 ID=mRNA_L-elsbetiae_contig1258.2081.1|Name=mRNA_L-elsbetiae_contig1258.2081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig1258:14027..14532- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGTGGTCCTCCCCCTTCTAAAACCCGCCACGTTTGCTCTTGGTGA
GATTATCGTCACTCCGAAGGTCGGCATAAGAGAGATGGGGTTCATCATGA
GCGGAGAGGTCGAGATGAGAGTGGTCCTCCCCCTTCTAAAACCCGCCACG
TTTGCTCTTGGTGAGATTATCGTCACTCCGAAGGTCGGCATAAGAGAGAT
GGGGTTCATCATGAGCGGAGAGGTCGAGGTTCGACTAGCCAAGGGCAGAC
GAAACTTCAAGACGATGACCATGGGCGAACGGCGACACTTCGGGGAGATG
TTCATGCTTGTTCGACTAGCCAAGGGCAGACGAAACTTCAAGACGATGAC
CATGGGCGAACGGCGACACTTCGGGGAGATGTTCATGCTT
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