mRNA_L-elsbetiae_contig10159.208.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI) HSP 1 Score: 150 bits (379), Expect = 2.240e-40 Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 1 Query: 19 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 +A GGGELCEFFEGYSA+GSDAAMPNGIYSLDDLKEFG+EKGWCPYFLARHIINHANVLVYNYQYMLDPKV G Sbjct: 145 KAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAG 219
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA) HSP 1 Score: 129 bits (325), Expect = 4.860e-33 Identity = 53/67 (79.10%), Postives = 63/67 (94.03%), Query Frame = 1 Query: 43 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 ELC+F+E Y A+GSD+ MP+GIYS++DLK+FGREKGWCPYFLARH+INHAN+LVYNYQYMLDPKV G Sbjct: 191 ELCQFYEEYDANGSDSVMPSGIYSIEDLKDFGREKGWCPYFLARHVINHANILVYNYQYMLDPKVAG 257
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S1UJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJA8_9STRA) HSP 1 Score: 119 bits (299), Expect = 3.560e-31 Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1 Query: 19 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 RA E ELC+F+E Y +G+DA +P GIYSL+DL++ GRE+GWCPYFLARH++ HANVL+YNYQYMLDPKV G Sbjct: 125 RAQEGAEVELCDFYENYDQNGTDAVVPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAG 199
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA) HSP 1 Score: 122 bits (307), Expect = 8.470e-31 Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 43 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 E C+F+E Y GSDAA+PNGI+SLDDLK GREKGWCPYFLARH+INHA VLVYNYQYMLDPKV G Sbjct: 197 ETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAG 263
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.310e-30 Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 43 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 E C+F+E Y GSDAA+PNGI+SLDDLK GREKGWCPYFLARH+INHA VLVYNYQYMLDPKV G Sbjct: 197 ETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAG 263
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.310e-30 Identity = 52/75 (69.33%), Postives = 63/75 (84.00%), Query Frame = 1 Query: 19 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 RA E ELCEF+E Y A+G+D A+P GIYSL+DL++ GRE+GWCPYFLARH++ HANVL+YNYQYMLDPKV G Sbjct: 189 RAQEGASVELCEFYEQYDANGTDTAIPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAG 263
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC) HSP 1 Score: 118 bits (295), Expect = 5.470e-29 Identity = 47/67 (70.15%), Postives = 60/67 (89.55%), Query Frame = 1 Query: 43 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 ELC+++E Y +G+DA + +GIYSLDDLKE G+++GWCPYFLARHIINHAN+L+YNYQY+LDPKV G Sbjct: 154 ELCQYYEEYEKNGTDAGIAHGIYSLDDLKELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAG 220
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A1Y1HMG9_KLENI (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMG9_KLENI) HSP 1 Score: 115 bits (288), Expect = 4.740e-28 Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 Query: 43 ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKVGG 243 ELC+FFEGY G+DA +P G+Y+L D+K FGR+KGWCPYFLARH+I ANV++YNYQYMLDPKV G Sbjct: 152 ELCDFFEGYEKKGADALLPAGVYTLHDMKVFGRQKGWCPYFLARHMITFANVVIYNYQYMLDPKVAG 218
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A7S3FSW1_9CHLO (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FSW1_9CHLO) HSP 1 Score: 114 bits (284), Expect = 1.630e-27 Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1 Query: 13 GGRASETGGG---ELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKV 237 GG AS GGG ELCEF+E Y + GS+A +P G+Y+LDDLK FG ++ WCPYFLARH+I++ANV+VYNYQYMLDPKV Sbjct: 114 GGSASGEGGGAAHELCEFYEEYESKGSEAILPPGVYTLDDLKVFGEQRRWCPYFLARHMISYANVIVYNYQYMLDPKV 191
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Match: A0A061RQC9_9CHLO (Dna repair helicase uvh6 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RQC9_9CHLO) HSP 1 Score: 111 bits (278), Expect = 2.400e-27 Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 1 Query: 19 RASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGWCPYFLARHIINHANVLVYNYQYMLDPKV 237 RA+E ELCEFFEG+ G +A +P G+Y+L D+++FGREKGWCPYFLARH+I +NV+VYNYQYMLDPKV Sbjct: 69 RATENPDIELCEFFEGHEKAGGEALLPPGVYTLHDIRQFGREKGWCPYFLARHMIAFSNVIVYNYQYMLDPKV 141 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10159.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10159.208.1 >prot_L-elsbetiae_contig10159.208.1 ID=prot_L-elsbetiae_contig10159.208.1|Name=mRNA_L-elsbetiae_contig10159.208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp GGGGGGRASETGGGELCEFFEGYSAHGSDAAMPNGIYSLDDLKEFGREKGback to top mRNA from alignment at L-elsbetiae_contig10159:5815..6780- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10159.208.1 ID=mRNA_L-elsbetiae_contig10159.208.1|Name=mRNA_L-elsbetiae_contig10159.208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig10159:5815..6780- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10159:5815..6780- >mRNA_L-elsbetiae_contig10159.208.1 ID=mRNA_L-elsbetiae_contig10159.208.1|Name=mRNA_L-elsbetiae_contig10159.208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig10159:5815..6780- (Laminarionema elsbetiae ELsaHSoW15)back to top |