mRNA_L-elsbetiae_contig10157.207.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10157.207.1
Unique NamemRNA_L-elsbetiae_contig10157.207.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10157.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10157contigL-elsbetiae_contig10157:5423..6381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815246.8621485-CDS-L-elsbetiae_contig10157:5423..56301622815246.8621485-CDS-L-elsbetiae_contig10157:5423..5630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10157 5424..5630 -
1691682793.8852725-CDS-L-elsbetiae_contig10157:5423..56301691682793.8852725-CDS-L-elsbetiae_contig10157:5423..5630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10157 5424..5630 -
1622815246.8735266-CDS-L-elsbetiae_contig10157:6297..63811622815246.8735266-CDS-L-elsbetiae_contig10157:6297..6381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10157 6298..6381 -
1691682793.894014-CDS-L-elsbetiae_contig10157:6297..63811691682793.894014-CDS-L-elsbetiae_contig10157:6297..6381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10157 6298..6381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10157.207.1prot_L-elsbetiae_contig10157.207.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10157 5424..6381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10157.207.1

>prot_L-elsbetiae_contig10157.207.1 ID=prot_L-elsbetiae_contig10157.207.1|Name=mRNA_L-elsbetiae_contig10157.207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
KKRTHNREQDERGTGTSPAPIAPEFQALDKAASALVDATAAAAGQIRKDK
DLETKNAAALQVRVHVRRNEGMNNCQPGAGTTPFPKVAFAAGRGGGS
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mRNA from alignment at L-elsbetiae_contig10157:5423..6381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10157.207.1 ID=mRNA_L-elsbetiae_contig10157.207.1|Name=mRNA_L-elsbetiae_contig10157.207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=959bp|location=Sequence derived from alignment at L-elsbetiae_contig10157:5423..6381- (Laminarionema elsbetiae ELsaHSoW15)
AAGAAGAGGACGCACAACAGGGAGCAGGATGAGCGCGGGACCGGCACGTC
GCCAGCGCCCATTGCGCCCGAGTTTCAGGCCCTTGTAAGTATCTACCCTA
AATGTTATATTTTTGTATTTTGTCTGCATGTAGCCCCAGGCGTCTGATGT
GTTGTTGCCGTGTAGCCCCATACTGTTTTATCCGCGTGCCTTCAAGGGAT
GGTTGAGGTTATTTTGGCCGGAGGGAGGGTAGAGCGGGCATGTTAACGGA
ATGAAGGGCAACCACGCCGTGCGTTGAGGACCGTTGGCGTGTCGATTTCG
CTGCGTTGCTCTCGACCATAATTTTTCTACGGCGTCACGTCTGGTTTCCT
ATTGCTGGGCCCTGTCACTGAAGGCTGCACGTGTGTGGTTGTCTAAGTTG
CAAAGCCTTGCCGTATTTTTCCCTGGGCCTTGCCACTCGGTGCATACAAA
CCAGCACTATGTGTAGACAAGCATGCCTCGCGCGATGACGAAAGCTCAAC
CTCCGGCGGTCGGACAAGCGGGGACCCCTCAAACGTTCGACGTCTATTTC
TCTCACAACAACTGTACGTCTGTGTGTCGAATTTGGACGTCTCATTCCAT
GAAAGCTTTCGGTCTGTTTATCGTTGTATTTGTGATAAATTTTGGGGACC
AGCGCGTATGCATTGCGGCATCACGTCTACGCCATCCATCGCCTCCTTGC
ACTGAATCTGTTTCTCGCGATTTGTATGGTATCATTCCTCCAAACACACA
GGACAAGGCCGCCAGTGCTCTCGTTGACGCCACGGCCGCCGCGGCCGGAC
AAATCAGGAAGGATAAGGACTTGGAGACGAAGAACGCAGCAGCTCTGCAA
GTTCGTGTCCACGTCCGCCGCAACGAGGGGATGAATAACTGCCAACCGGG
TGCCGGCACGACACCTTTCCCGAAAGTGGCGTTCGCCGCGGGCCGCGGCG
GCGGGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10157:5423..6381-

>mRNA_L-elsbetiae_contig10157.207.1 ID=mRNA_L-elsbetiae_contig10157.207.1|Name=mRNA_L-elsbetiae_contig10157.207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig10157:5423..6381- (Laminarionema elsbetiae ELsaHSoW15)
AAGAAGAGGACGCACAACAGGGAGCAGGATGAGCGCGGGACCGGCACGTC
GCCAGCGCCCATTGCGCCCGAGTTTCAGGCCCTTAAGAAGAGGACGCACA
ACAGGGAGCAGGATGAGCGCGGGACCGGCACGTCGCCAGCGCCCATTGCG
CCCGAGTTTCAGGCCCTTGACAAGGCCGCCAGTGCTCTCGTTGACGCCAC
GGCCGCCGCGGCCGGACAAATCAGGAAGGATAAGGACTTGGAGACGAAGA
ACGCAGCAGCTCTGCAAGTTCGTGTCCACGTCCGCCGCAACGAGGGGATG
AATAACTGCCAACCGGGTGCCGGCACGACACCTTTCCCGAAAGTGGCGTT
CGCCGCGGGCCGCGGCGGCGGGAGCGACAAGGCCGCCAGTGCTCTCGTTG
ACGCCACGGCCGCCGCGGCCGGACAAATCAGGAAGGATAAGGACTTGGAG
ACGAAGAACGCAGCAGCTCTGCAAGTTCGTGTCCACGTCCGCCGCAACGA
GGGGATGAATAACTGCCAACCGGGTGCCGGCACGACACCTTTCCCGAAAG
TGGCGTTCGCCGCGGGCCGCGGCGGCGGGAGC
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