prot_L-elsbetiae_contig10.20.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10.20.1
Unique Nameprot_L-elsbetiae_contig10.20.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length83
Homology
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_GALSU (ATP synthase subunit c, chloroplastic n=4 Tax=Rhodophyta TaxID=2763 RepID=ATPH_GALSU)

HSP 1 Score: 134 bits (337), Expect = 1.720e-39
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 82
            MDSI+SAASVIAAGLAVGLAAIGPGIGQGTA+ QAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVAL+LLFANPF N
Sbjct:    1 MDSIISAASVIAAGLAVGLAAIGPGIGQGTASAQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFIN 82
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: H2EV64_9STRA (ATP synthase subunit c, chloroplastic n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV64_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.370e-39
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 82
            MDSIVSAASVIAAGL++GL+AIGPGIGQG AAGQAVEGIARQPEAE+KIRGTLLLS AFMEALTIYGLVVALALLFANPF +
Sbjct:    1 MDSIVSAASVIAAGLSIGLSAIGPGIGQGNAAGQAVEGIARQPEAESKIRGTLLLSLAFMEALTIYGLVVALALLFANPFNS 82
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: C6KIJ2_AURAN (ATP synthase subunit c, chloroplastic n=4 Tax=Ochrophyta TaxID=2696291 RepID=C6KIJ2_AURAN)

HSP 1 Score: 132 bits (332), Expect = 9.660e-39
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 82
            MDSI++AASVI AGL+VGLAAIGPGIGQGTAAGQAVEGIARQPE EN+IRGTLLLS AFMEALTIYGLVVALALLFANPF  
Sbjct:    1 MDSIIAAASVIGAGLSVGLAAIGPGIGQGTAAGQAVEGIARQPEVENQIRGTLLLSLAFMEALTIYGLVVALALLFANPFAG 82
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: K9ZV94_9STRA (ATP synthase subunit c, chloroplastic n=18 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZV94_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.410e-38
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 0 
Query:    2 DSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 82
            DSIVSAASVIAAG+AVGLAAIGPGIGQG AAGQAVEGIARQPEAE+KIRGTLLLS AFMEALTIYGLVVAL+L+FANPF++
Sbjct:    3 DSIVSAASVIAAGIAVGLAAIGPGIGQGNAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALSLIFANPFSS 83
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_ARATH (ATP synthase subunit c, chloroplastic n=530 Tax=Streptophytina TaxID=131221 RepID=ATPH_ARATH)

HSP 1 Score: 130 bits (328), Expect = 3.820e-38
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 80
            M+ +VSAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_AMBTC (ATP synthase subunit c, chloroplastic n=7777 Tax=Eukaryota TaxID=2759 RepID=ATPH_AMBTC)

HSP 1 Score: 130 bits (327), Expect = 5.430e-38
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 80
            M+ ++SAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: A0A199UTF9_ANACO (ATP synthase subunit C, plastid n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UTF9_ANACO)

HSP 1 Score: 130 bits (327), Expect = 1.040e-37
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 80
            M+ ++SAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:   23 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 102
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_PEA (ATP synthase subunit c, chloroplastic n=300 Tax=cellular organisms TaxID=131567 RepID=ATPH_PEA)

HSP 1 Score: 129 bits (325), Expect = 1.100e-37
Identity = 71/80 (88.75%), Postives = 78/80 (97.50%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 80
            M+ +++AASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE+KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_DIALT (ATP synthase subunit c, chloroplastic n=8 Tax=Eukaryota TaxID=2759 RepID=ATPH_DIALT)

HSP 1 Score: 129 bits (325), Expect = 1.160e-37
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFT 81
            M+ I+SAASVIAAGL+VGLAAIGPGIGQG+AAGQA+EGIARQPEAE KIRGTLLLS AFMEALTIYGLVVAL+LLFANPFT
Sbjct:    1 MNPIISAASVIAAGLSVGLAAIGPGIGQGSAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFT 81
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: A0A7T8ZS27_9ROSA (ATP synthase subunit c, chloroplastic n=3 Tax=Urticaceae TaxID=3499 RepID=A0A7T8ZS27_9ROSA)

HSP 1 Score: 130 bits (327), Expect = 1.210e-37
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 80
            M+ ++SAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:   28 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATPH_GALSU1.720e-3991.46ATP synthase subunit c, chloroplastic n=4 Tax=Rhod... [more]
H2EV64_9STRA3.370e-3990.24ATP synthase subunit c, chloroplastic n=1 Tax=Ulna... [more]
C6KIJ2_AURAN9.660e-3989.02ATP synthase subunit c, chloroplastic n=4 Tax=Ochr... [more]
K9ZV94_9STRA1.410e-3890.12ATP synthase subunit c, chloroplastic n=18 Tax=Eus... [more]
ATPH_ARATH3.820e-3891.25ATP synthase subunit c, chloroplastic n=530 Tax=St... [more]
ATPH_AMBTC5.430e-3890.00ATP synthase subunit c, chloroplastic n=7777 Tax=E... [more]
A0A199UTF9_ANACO1.040e-3790.00ATP synthase subunit C, plastid n=1 Tax=Ananas com... [more]
ATPH_PEA1.100e-3788.75ATP synthase subunit c, chloroplastic n=300 Tax=ce... [more]
ATPH_DIALT1.160e-3788.89ATP synthase subunit c, chloroplastic n=8 Tax=Euka... [more]
A0A7T8ZS27_9ROSA1.210e-3790.00ATP synthase subunit c, chloroplastic n=3 Tax=Urti... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATP synthase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 33..48
score: 41.73
coord: 12..31
score: 42.99
coord: 50..75
score: 46.08
IPR000454ATP synthase, F0 complex, subunit CPANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 1..81
IPR000454ATP synthase, F0 complex, subunit CHAMAPMF_01396ATP_synth_c_bactcoord: 10..75
score: 16.03
IPR005953ATP synthase, F0 complex, subunit C, bacterial/chloroplastTIGRFAMTIGR01260TIGR01260coord: 20..77
e-value: 1.4E-19
score: 67.9
IPR038662F1F0 ATP synthase subunit C superfamilyGENE3D1.20.20.10coord: 3..81
e-value: 1.8E-35
score: 122.9
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 11..73
e-value: 7.1E-20
score: 71.1
NoneNo IPR availablePANTHERPTHR10031:SF6coord: 1..81
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..82
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..77
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..52
NoneNo IPR availableTMHMMTMhelixcoord: 53..75
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding sitePROSITEPS00605ATPASE_Ccoord: 40..61
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 3..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:41021..41269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.20.1mRNA_L-elsbetiae_contig10.20.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10 41021..41269 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10.20.1 ID=prot_L-elsbetiae_contig10.20.1|Name=mRNA_L-elsbetiae_contig10.20.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIR
GTLLLSFAFMEALTIYGLVVALALLFANPFTN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000454ATP_synth_F0_csu
IPR005953ATP_synth_csu_bac/chlpt
IPR038662ATP_synth_F0_csu_sf
IPR002379ATPase_proteolipid_c-like_dom
IPR020537ATP_synth_F0_csu_DDCD_BS
IPR035921F/V-ATP_Csub_sf