mRNA_L-elsbetiae_contig1015.197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1015.197.1
Unique NamemRNA_L-elsbetiae_contig1015.197.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1015.197.1 vs. uniprot
Match: D8LSF7_ECTSI (C2-C2_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.200e-46
Identity = 97/124 (78.23%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    1 RELQDVLHERDVAIARSGKVDDLEETVSELRRHNKELENQVTRLCENPFISQAFRDQERSERVLELEQENRAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAERALQEMRVRHNETEA 372
            RELQD LHERDVA+A+ G+                    QVTRLCENPFISQAFRDQERSERVLELEQ +RAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAERALQEMRVRHNETEA
Sbjct:  304 RELQDALHERDVAVAKCGRXXXXXXXXXXXXXXXXXXXXQVTRLCENPFISQAFRDQERSERVLELEQGSRAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAERALQEMRVRHNETEA 427
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BLAST of mRNA_L-elsbetiae_contig1015.197.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.360e-21
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:    1 RELQDVLHERDVAIARSGKVDDLEETVSELRRHNKELENQVTRLCENPFISQAFRDQERSERVLELEQENRAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAERALQEMRVRHNE 363
            R LQD+ H++DVA AR+ + DD            + LE Q+T LCE+PFI +A+   E++ R+ ELE+  RA Q + +HLQ TAQ H AAL+ L+K+  RLR++KE AE  L+E+R RH E
Sbjct:  325 RALQDMAHQKDVAEARAARADDXXXXXXXXXXXXRALEEQITLLCESPFIGKAYAGAEKAARLAELERAERAWQQRAEHLQATAQEHQAALLALQKKAARLRDEKETAEAQLREVRARHGE 445
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BLAST of mRNA_L-elsbetiae_contig1015.197.1 vs. uniprot
Match: A0A7S2FNE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNE5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-15
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   70 EETVSELRRHNKELENQVTRLCENPFISQAFRDQERSERVLELEQENRAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAE 327
            E  + ELR  N   E ++  LCE+PFIS A++ Q+ ++R+ E E+  R  +LK++HLQETAQ HHAALV +K Q   L+  KE AE
Sbjct:    1 ESELRELREQNANYEQKIKTLCESPFISDAYKKQDSAQRLAEYERNERTTRLKLEHLQETAQNHHAALVAMKDQCQELKLAKESAE 86
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BLAST of mRNA_L-elsbetiae_contig1015.197.1 vs. uniprot
Match: A0A482SAF9_9ARCH (C2-C2_1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAF9_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 3.550e-13
Identity = 42/115 (36.52%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 RELQDVLHERDVAIARSGKVDDLEETVSELRRHNKELENQVTRLCENPFISQAFRDQERSERVLELEQENRAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAERALQEM 345
            R L+++  E++V+ A+  ++  LEE V+ELR+ N+ LE+++ RLC++PFIS AF   E   R  EL +E    +++I H++E     H+AL T++K+  RL ++K+ A++ + E+
Sbjct:   77 RALEELRLEKEVSDAKVARIGSLEELVAELRQANRSLEDKIARLCDSPFISDAFGLHETRLRYEELLKEREDLKMQIGHMKEALTVKHSALTTVQKEAARLLDEKDAADKKVHEL 191
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BLAST of mRNA_L-elsbetiae_contig1015.197.1 vs. uniprot
Match: A0A7S1TSY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSY9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.210e-11
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:    1 RELQDVLHERDVAIARSGKVDDLEETVSELRRHNKELENQVTRLCENPFISQAFRDQERSERVLELEQENRAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAERALQEMRVRHNETEA 372
            R LQ    +++VA  R+    +L + V EL   NKE E ++ RLC++PFIS+A+ +QER  R+               HL+ETAQT+H AL  L+K+   L  +KE A R L  +R++  E EA
Sbjct:   85 RALQQAAEDKEVAEERAEGAAELMDRVRELELSNKEREEEIQRLCQSPFISEAYENQERMRRLEAXXXXXXXXXXXXXHLRETAQTYHTALSQLQKKANDLMSEKEAAVRELDALRLKVREGEA 208
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BLAST of mRNA_L-elsbetiae_contig1015.197.1 vs. uniprot
Match: A0A7R9UCJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCJ7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.610e-10
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   88 LRRHNKELENQVTRLCENPFISQAFRDQERSERVLELEQENRAAQLKIDHLQETAQTHHAALVTLKKQTVRLREDKERAERALQEMRVRHNETE 369
            + + N+E E+++ RLC++PFIS+A+ +QER  R+           L+I HL+ETAQT+H AL  L+ +   L  +KE A R L  +R++  E+E
Sbjct:    1 MEQSNREREDEIQRLCQSPFISEAYENQERMRRLESAXXXXXXXXLQISHLRETAQTYHNALTQLQNKANALMAEKEVAVRELDALRIKIRESE 94
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1015.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LSF7_ECTSI5.200e-4678.23C2-C2_1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CCF4_9STRA3.360e-2146.28EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2FNE5_9STRA1.070e-1547.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A482SAF9_9ARCH3.550e-1336.52C2-C2_1 domain-containing protein n=1 Tax=archaeon... [more]
A0A7S1TSY9_9STRA1.210e-1138.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9UCJ7_9STRA2.610e-1039.36Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1015contigL-elsbetiae_contig1015:13143..14507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.3e-39
Seed eggNOG ortholog2880.D8LSF7
Preferred nameRPGRIP1L
KEGG koko:K16512,ko:K16550
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001655,GO:0001664,GO:0001701,GO:0001736,GO:0001738,GO:0001754,GO:0001822,GO:0001889,GO:0002009,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005886,GO:0005911,GO:0005929,GO:0005930,GO:0006935,GO:0006996,GO:0007163,GO:0007164,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0021532,GO:0021537,GO:0021549,GO:0021591,GO:0021670,GO:0021772,GO:0021915,GO:0021988,GO:0022008,GO:0022037,GO:0022038,GO:0022406,GO:0022607,GO:0022615,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030182,GO:0030326,GO:0030900,GO:0030902,GO:0031862,GO:0031870,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0035253,GO:0035295,GO:0035869,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043583,GO:0043584,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045744,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051640,GO:0051641,GO:0060039,GO:0060041,GO:0060173,GO:0060271,GO:0060322,GO:0060429,GO:0060541,GO:0061008,GO:0061351,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0072657,GO:0090102,GO:0090596,GO:0097014,GO:0097458,GO:0097499,GO:0097500,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1903441,GO:1904491,GO:1905515,GO:1990778
EggNOG free text desc.thromboxane A2 receptor binding
EggNOG OGs2CMYB@1,2QSQG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Exons3
Model size373
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1015.197.1prot_L-elsbetiae_contig1015.197.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1015 13144..14507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815246.0086455-CDS-L-elsbetiae_contig1015:13143..132721622815246.0086455-CDS-L-elsbetiae_contig1015:13143..13272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 13144..13272 -
1691682793.4392872-CDS-L-elsbetiae_contig1015:13143..132721691682793.4392872-CDS-L-elsbetiae_contig1015:13143..13272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 13144..13272 -
1622815246.0225487-CDS-L-elsbetiae_contig1015:13946..140691622815246.0225487-CDS-L-elsbetiae_contig1015:13946..14069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 13947..14069 -
1691682793.4530473-CDS-L-elsbetiae_contig1015:13946..140691691682793.4530473-CDS-L-elsbetiae_contig1015:13946..14069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 13947..14069 -
1622815246.0347743-CDS-L-elsbetiae_contig1015:14387..145071622815246.0347743-CDS-L-elsbetiae_contig1015:14387..14507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 14388..14507 -
1691682793.4635868-CDS-L-elsbetiae_contig1015:14387..145071691682793.4635868-CDS-L-elsbetiae_contig1015:14387..14507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 14388..14507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1015.197.1

>prot_L-elsbetiae_contig1015.197.1 ID=prot_L-elsbetiae_contig1015.197.1|Name=mRNA_L-elsbetiae_contig1015.197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
RELQDVLHERDVAIARSGKVDDLEETVSELRRHNKELENQVTRLCENPFI
SQAFRDQERSERVLELEQENRAAQLKIDHLQETAQTHHAALVTLKKQTVR
LREDKERAERALQEMRVRHNETEA
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mRNA from alignment at L-elsbetiae_contig1015:13143..14507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1015.197.1 ID=mRNA_L-elsbetiae_contig1015.197.1|Name=mRNA_L-elsbetiae_contig1015.197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1365bp|location=Sequence derived from alignment at L-elsbetiae_contig1015:13143..14507- (Laminarionema elsbetiae ELsaHSoW15)
AGGGAATTGCAGGACGTTCTGCACGAGCGCGACGTGGCCATTGCCAGGAG
TGGGAAGGTGGACGACCTCGAGGAGACGGTCTCAGAGCTGCGGCGGCACA
ACAAGGAGCTAGAGAATCAAGTGAGCCACATGCCGGTGTACAATACCGCA
AGCCAACAACGTTCACAGAAAATGCGCCCTCCTGAACAACATTTTGTCAA
CTTGTCGATACACCCGTTTGGGCGACCGAGAAGAGTTCAGATGCCCAACG
CGTCCATGCGCTTGCGGCGTTACTCCTCGAGGTGTCAAATCTTGATCTTC
GAGATGCGTCGCGCTCCCCTTAAACTTGTGATGCTATGCAAATGCTCCCT
GCACGTTGTTGTGACTTTCCTCCCTCTCATTCGCTTTTCGTTTCTCGTCC
CGCTCCATCTTTGTCGTCTTCGATGTTTTTTTCGCAAGGTTACCAGACTG
TGCGAGAACCCCTTCATTTCGCAGGCTTTCCGCGACCAGGAACGCTCTGA
GCGCGTGCTGGAGCTGGAGCAGGAAAACCGGGCGGCCCAGCTCAAGATCG
ACCACCTCCAGGTAGTACAATCCGCAAGCCTCTCCTCTGGCCCCCCTCTA
GCTCCCCCTGGGCTCGCTTTGGCCCGGAAACGGTAAACACGTTGGCTGGG
GCGATGTTTGTGGCAGGCTTTCTTCTAACGGGTAGGGTACTATCGAATTG
TACGTGCGTGCGCCGTCGTGTGCTTGCGATCGCAGGCAGACATCCACGAC
AGTATATGCGACTCAGAAGGAATGTTACCGCGAAAGCAACATCACAATAA
CTGTCTCTGAGCGCCCACGCACAAACGGTGGTGGCGCCTCTCGTCGGTAG
GAACGGTCCTCTTTCTCGAACAGGTGTATGGTCAACGGTCAAATGACAAC
GGCAAGCAACTGCATGAGTGCTTCTCCACCCAGCACTTCCCCGTGTCCTC
GACATCTGGTCAATATGGGAACACTTCAAGAGACAAATGGCCGAGGCCAC
CCACACGGAAATGGTCGCGACCTCCAAACCAAATGCTGCGGCTAAGACAA
GACACAAGGCAAAGAAATGCTGGAGAACGTTGCCATCAAAATAAGATGTT
GGCGCTTTCAGCGCTCGTCACAGCAACTCCTTCCCCGCCCAAATCCCTCA
CGGCTCTGAAAACAAGGAACCCGCGCGTCTTATTCACCACCCACGGTCAC
CTTCTGCCTATCACTTATAAACAAACGTGTCTCAGGAGACAGCCCAGACG
CATCACGCGGCGTTGGTTACGCTCAAGAAGCAGACGGTCCGGCTGAGGGA
GGATAAGGAGAGGGCGGAACGAGCCCTCCAGGAGATGCGCGTCAGGCACA
ACGAGACAGAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1015:13143..14507-

>mRNA_L-elsbetiae_contig1015.197.1 ID=mRNA_L-elsbetiae_contig1015.197.1|Name=mRNA_L-elsbetiae_contig1015.197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig1015:13143..14507- (Laminarionema elsbetiae ELsaHSoW15)
AGGGAATTGCAGGACGTTCTGCACGAGCGCGACGTGGCCATTGCCAGGAG
TGGGAAGGTGGACGACCTCGAGGAGACGGTCTCAGAGCTGCGGCGGCACA
ACAAGGAGCTAGAGAATCAAAGGGAATTGCAGGACGTTCTGCACGAGCGC
GACGTGGCCATTGCCAGGAGTGGGAAGGTGGACGACCTCGAGGAGACGGT
CTCAGAGCTGCGGCGGCACAACAAGGAGCTAGAGAATCAAGTTACCAGAC
TGTGCGAGAACCCCTTCATTTCGCAGGCTTTCCGCGACCAGGAACGCTCT
GAGCGCGTGCTGGAGCTGGAGCAGGAAAACCGGGCGGCCCAGCTCAAGAT
CGACCACCTCCAGGTTACCAGACTGTGCGAGAACCCCTTCATTTCGCAGG
CTTTCCGCGACCAGGAACGCTCTGAGCGCGTGCTGGAGCTGGAGCAGGAA
AACCGGGCGGCCCAGCTCAAGATCGACCACCTCCAGGAGACAGCCCAGAC
GCATCACGCGGCGTTGGTTACGCTCAAGAAGCAGACGGTCCGGCTGAGGG
AGGATAAGGAGAGGGCGGAACGAGCCCTCCAGGAGATGCGCGTCAGGCAC
AACGAGACAGAGGCGGAGACAGCCCAGACGCATCACGCGGCGTTGGTTAC
GCTCAAGAAGCAGACGGTCCGGCTGAGGGAGGATAAGGAGAGGGCGGAAC
GAGCCCTCCAGGAGATGCGCGTCAGGCACAACGAGACAGAGGCG
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