mRNA_L-elsbetiae_contig1015.196.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1015.196.1
Unique NamemRNA_L-elsbetiae_contig1015.196.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: D8LSF7_ECTSI (C2-C2_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.880e-33
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:    1 QRVQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            QRVQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERL +++RLEAQ
Sbjct:  490 QRVQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLAVINRLEAQ 562
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A6H5KSV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.090e-31
Identity = 66/70 (94.29%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   10 QVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            +VSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLT+++RLEAQ
Sbjct:   44 EVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTVINRLEAQ 113
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.180e-19
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    7 VQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            +QV+NL LTRELERAERMLKAQM INRDLH+ELEE  R+   D+  + QKL DFEALAL+RL  V  LEAQ
Sbjct:  602 IQVANLGLTRELERAERMLKAQMGINRDLHLELEERARQMDADKRGIAQKLADFEALALQRLARVQELEAQ 672
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A7S3ZSY2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.760e-12
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   37 ELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            ELERAE+MLK QMSINRDLH+ELE+A  + +    EL QK+ D+EAL ++RL  +H LEAQ
Sbjct:  460 ELERAEKMLKVQMSINRDLHLELEDASSKKSAKHAELLQKVEDYEALNVKRLQRIHTLEAQ 520
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A7S3ZSY1_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.760e-12
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   37 ELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            ELERAE+MLK QMSINRDLH+ELE+A  + +    EL QK+ D+EAL ++RL  +H LEAQ
Sbjct:  460 ELERAEKMLKVQMSINRDLHLELEDASSKKSAKHAELLQKVEDYEALNVKRLQRIHTLEAQ 520
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A2R5G9Z1_9STRA (Protein fantom n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9Z1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.330e-9
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 QRVQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            Q +Q+++L+  R+LE AERMLKAQ +INRDL+ E+ +  R+      EL +KL D+E L   RL  +H LEAQ
Sbjct:  466 QDLQMTHLSTCRDLEMAERMLKAQTAINRDLNEEISDLQRKVKGSNNELLRKLEDYETLCARRLQKIHALEAQ 538
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A067CSI2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CSI2_SAPPC)

HSP 1 Score: 55.8 bits (133), Expect = 2.520e-7
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    7 VQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            +Q+++L+ T+ELER E+ML+AQ SINR+L +E+E+   R     G L +K+   E LA +RL  +  LEAQ
Sbjct:  483 LQIAHLSSTQELERCEKMLQAQTSINRELSLEIEDLVSRKDASHGALLKKISTLELLAEQRLKKIAVLEAQ 553
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A1V9YGY3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGY3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.450e-7
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    7 VQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            +Q+++L+ T+ELER E+ML+AQ SINR+L +E+EE   R  +    L +KL   E +A +RL  + +LEAQ
Sbjct:  504 LQIAHLSSTQELERCEKMLQAQTSINRELALEIEELVARKDVGAVALEKKLASLELVAEQRLKKIAQLEAQ 574
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: A0A6G0X5T1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5T1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.450e-7
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    4 RVQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            R+Q+++L  T+ELER E+ML AQ SINR+L  E+EE   R    +  L +K+ + E +A +RL  + +LEAQ
Sbjct:  459 RLQIAHLTSTQELERCEKMLHAQTSINRELTFEIEELVTRKEAAQDTLRRKIDELELVADQRLRKIAQLEAQ 530
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BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Match: T0PLX5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PLX5_SAPDV)

HSP 1 Score: 54.3 bits (129), Expect = 8.820e-7
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    7 VQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELGQKLRDFEALALERLTMVHRLEAQ 219
            +Q+++L+ T+ELER E+ML+AQ SINR+L +E+E+   R     G L +K+   E L  +RL  +  LEAQ
Sbjct:  483 LQIAHLSSTQELERCEKMLQAQTSINRELSLEIEDLVSRKDASHGALLKKISTLELLTEQRLKKIAVLEAQ 553
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1015.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LSF7_ECTSI4.880e-3394.52C2-C2_1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KSV9_9PHAE1.090e-3194.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCF4_9STRA2.180e-1969.01EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3ZSY2_9STRA1.760e-1260.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZSY1_9STRA1.760e-1260.66Hypothetical protein (Fragment) n=3 Tax=Pelagomona... [more]
A0A2R5G9Z1_9STRA4.330e-947.95Protein fantom n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A067CSI2_SAPPC2.520e-745.07Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9YGY3_9STRA3.450e-745.07Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0X5T1_9STRA6.450e-744.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
T0PLX5_SAPDV8.820e-743.66Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1015contigL-elsbetiae_contig1015:11106..11697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue8e-29
Seed eggNOG ortholog2880.D8LSF7
Preferred nameRPGRIP1L
KEGG koko:K16512,ko:K16550
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001655,GO:0001664,GO:0001701,GO:0001736,GO:0001738,GO:0001754,GO:0001822,GO:0001889,GO:0002009,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005886,GO:0005911,GO:0005929,GO:0005930,GO:0006935,GO:0006996,GO:0007163,GO:0007164,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0021532,GO:0021537,GO:0021549,GO:0021591,GO:0021670,GO:0021772,GO:0021915,GO:0021988,GO:0022008,GO:0022037,GO:0022038,GO:0022406,GO:0022607,GO:0022615,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030182,GO:0030326,GO:0030900,GO:0030902,GO:0031862,GO:0031870,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0035253,GO:0035295,GO:0035869,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043583,GO:0043584,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045744,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051640,GO:0051641,GO:0060039,GO:0060041,GO:0060173,GO:0060271,GO:0060322,GO:0060429,GO:0060541,GO:0061008,GO:0061351,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0072657,GO:0090102,GO:0090596,GO:0097014,GO:0097458,GO:0097499,GO:0097500,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1903441,GO:1904491,GO:1905515,GO:1990778
EggNOG free text desc.thromboxane A2 receptor binding
EggNOG OGs2CMYB@1,2QSQG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Exons2
Model size223
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.9521766-CDS-L-elsbetiae_contig1015:11107..112541622815245.9521766-CDS-L-elsbetiae_contig1015:11107..11254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 11108..11254 -
1691682793.4180837-CDS-L-elsbetiae_contig1015:11107..112541691682793.4180837-CDS-L-elsbetiae_contig1015:11107..11254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 11108..11254 -
1622815245.9648514-CDS-L-elsbetiae_contig1015:11625..116971622815245.9648514-CDS-L-elsbetiae_contig1015:11625..11697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 11626..11697 -
1691682793.4289951-CDS-L-elsbetiae_contig1015:11625..116971691682793.4289951-CDS-L-elsbetiae_contig1015:11625..11697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 11626..11697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1015.196.1prot_L-elsbetiae_contig1015.196.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1015 11108..11697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1015.196.1

>prot_L-elsbetiae_contig1015.196.1 ID=prot_L-elsbetiae_contig1015.196.1|Name=mRNA_L-elsbetiae_contig1015.196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
QRVQVSNLNLTRELERAERMLKAQMSINRDLHVELEEACRRSTLDRGELG
QKLRDFEALALERLTMVHRLEAQ
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mRNA from alignment at L-elsbetiae_contig1015:11106..11697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1015.196.1 ID=mRNA_L-elsbetiae_contig1015.196.1|Name=mRNA_L-elsbetiae_contig1015.196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=592bp|location=Sequence derived from alignment at L-elsbetiae_contig1015:11106..11697- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGGTGCAAGTGTCGAACCTGAACCTCACGAGGGAGCTCGAGCGAGC
AGAGCGTATGCTCAAGGCTCAGGTATGCGCAGGATTGTACCAACTGCATA
TGTTGTTGTTTCGGGCTGTTCTTCGTATTGCTCATCCCATTCATCTTCTT
GCTGTTCTTTCCTGTAAAGGGCTGCTATTTGTTCTCTCTGGTCATGGCGT
CGGCGTTGTTCGTGTCGATGTTGTTGAGTGGCGTTGATGATGCTGATCGT
TTTCCTATGGCCGCCCAACCACTCGTTCAAGGCTTCCAAGACATCTGAGG
TCTCTCTTGTGTATGACGTTCAATTACAGGAATCACGGGCACCTGGTTGA
GTGCTTTCCCGCTCTCTGTGTGGCCATTCATAACTTCTTGCGATCGCTTT
ACTTCCCAACTCGTTGGGCACATGTTCTCTATATATCGCCAAGATGAGCA
TCAACCGAGACTTGCATGTGGAGCTCGAGGAGGCGTGTAGAAGATCGACC
CTGGACCGGGGAGAGCTGGGGCAGAAGTTGCGCGACTTCGAGGCTCTCGC
TCTCGAGAGGCTGACCATGGTTCACCGGCTAGAGGCGCAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1015:11106..11697-

>mRNA_L-elsbetiae_contig1015.196.1 ID=mRNA_L-elsbetiae_contig1015.196.1|Name=mRNA_L-elsbetiae_contig1015.196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1015:11106..11697- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGGTGCAAGTGTCGAACCTGAACCTCACGAGGGAGCTCGAGCGAGC
AGAGCGTATGCTCAAGGCTCAGCAGCGGGTGCAAGTGTCGAACCTGAACC
TCACGAGGGAGCTCGAGCGAGCAGAGCGTATGCTCAAGGCTCAGATGAGC
ATCAACCGAGACTTGCATGTGGAGCTCGAGGAGGCGTGTAGAAGATCGAC
CCTGGACCGGGGAGAGCTGGGGCAGAAGTTGCGCGACTTCGAGGCTCTCG
CTCTCGAGAGGCTGACCATGGTTCACCGGCTAGAGGCGCAGATGAGCATC
AACCGAGACTTGCATGTGGAGCTCGAGGAGGCGTGTAGAAGATCGACCCT
GGACCGGGGAGAGCTGGGGCAGAAGTTGCGCGACTTCGAGGCTCTCGCTC
TCGAGAGGCTGACCATGGTTCACCGGCTAGAGGCGCAG
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