mRNA_L-elsbetiae_contig1015.199.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1015.199.1
Unique NamemRNA_L-elsbetiae_contig1015.199.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1015.199.1 vs. uniprot
Match: D8LSF7_ECTSI (C2-C2_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.920e-12
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:  220 MDGLTWEEKYLRLRDDHTSLTHKANEQDDTIRR 318
            M+GLTWEEKYLRLRDDHTSLTHKANEQDDTIRR
Sbjct:    1 MEGLTWEEKYLRLRDDHTSLTHKANEQDDTIRR 33
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BLAST of mRNA_L-elsbetiae_contig1015.199.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.360e-6
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  220 MDGLTWEEKYLRLRDDHTSLTHKANEQDDTIRR 318
            M+ L++EE+YL LRD+H SLTHK NEQ+DTIRR
Sbjct:    1 MEALSYEERYLSLRDEHVSLTHKCNEQEDTIRR 33
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1015.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSF7_ECTSI1.920e-1296.97C2-C2_1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CCF4_9STRA2.360e-669.70EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1015contigL-elsbetiae_contig1015:18339..18917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D8LSF7
Preferred nameRPGRIP1L
KEGG koko:K16512,ko:K16550
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001655,GO:0001664,GO:0001701,GO:0001736,GO:0001738,GO:0001754,GO:0001822,GO:0001889,GO:0002009,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005886,GO:0005911,GO:0005929,GO:0005930,GO:0006935,GO:0006996,GO:0007163,GO:0007164,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0021532,GO:0021537,GO:0021549,GO:0021591,GO:0021670,GO:0021772,GO:0021915,GO:0021988,GO:0022008,GO:0022037,GO:0022038,GO:0022406,GO:0022607,GO:0022615,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030182,GO:0030326,GO:0030900,GO:0030902,GO:0031862,GO:0031870,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0035253,GO:0035295,GO:0035869,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043583,GO:0043584,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045744,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051640,GO:0051641,GO:0060039,GO:0060041,GO:0060173,GO:0060271,GO:0060322,GO:0060429,GO:0060541,GO:0061008,GO:0061351,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0072657,GO:0090102,GO:0090596,GO:0097014,GO:0097458,GO:0097499,GO:0097500,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1903441,GO:1904491,GO:1905515,GO:1990778
EggNOG free text desc.thromboxane A2 receptor binding
EggNOG OGs2CMYB@1,2QSQG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Exons2
Model size323
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.9078617-CDS-L-elsbetiae_contig1015:18338..185211622815245.9078617-CDS-L-elsbetiae_contig1015:18338..18521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 18339..18521 -
1691682793.3935483-CDS-L-elsbetiae_contig1015:18338..185211691682793.3935483-CDS-L-elsbetiae_contig1015:18338..18521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 18339..18521 -
1622815245.9195578-CDS-L-elsbetiae_contig1015:18779..189171622815245.9195578-CDS-L-elsbetiae_contig1015:18779..18917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 18780..18917 -
1691682793.4097593-CDS-L-elsbetiae_contig1015:18779..189171691682793.4097593-CDS-L-elsbetiae_contig1015:18779..18917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1015 18780..18917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1015.199.1prot_L-elsbetiae_contig1015.199.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1015 18339..18917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1015.199.1

>prot_L-elsbetiae_contig1015.199.1 ID=prot_L-elsbetiae_contig1015.199.1|Name=mRNA_L-elsbetiae_contig1015.199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
TTRTSKIHTTSEINRLRDVNRLRDDELFLCALLLQRPKTLLQGCLLKGSG
RLGFGSSEDGRWHRRTPVTSYGVMDGLTWEEKYLRLRDDHTSLTHKANEQ
DDTIRR*
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mRNA from alignment at L-elsbetiae_contig1015:18339..18917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1015.199.1 ID=mRNA_L-elsbetiae_contig1015.199.1|Name=mRNA_L-elsbetiae_contig1015.199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=579bp|location=Sequence derived from alignment at L-elsbetiae_contig1015:18339..18917- (Laminarionema elsbetiae ELsaHSoW15)
ACCACCAGAACTTCGAAGATCCACACGACTTCGGAGATCAACAGATTGAG
GGACGTCAACAGATTGAGGGACGACGAGCTGTTTCTGTGTGCTCTTCTTC
TGCAACGGCCCAAGACATTACTCCAAGGCTGCTTGCTGGTAAGTGCAGAG
GGACACACGTCCTCGACTTTGCATTCTGCACAACGTCGGATGTAGGAATC
AGAAGATACGCGATACCCGTTGTCTTGGGCGTAGATTATCTAGATACATC
TAGTCTCCTCCTCTTCTGCGTGCATCACTGCTCTGCATCTGGGGCACGAT
CTCTCACCATATGCGGTCCTTGATGTAATGGAGCTCCCGTCTGCTTGCTT
GTGGGCCCTTTCCTTTCGATCCGTGGCTTGTACTTGTCACCCGCAGAAGG
GAAGCGGTCGGTTGGGTTTTGGTAGCAGCGAGGACGGAAGGTGGCACCGG
CGAACACCCGTCACCTCCTACGGCGTGATGGATGGCTTGACTTGGGAGGA
AAAGTACTTGCGACTGCGAGACGACCACACTTCCCTCACTCACAAGGCCA
ATGAGCAAGATGACACCATTCGACGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1015:18339..18917-

>mRNA_L-elsbetiae_contig1015.199.1 ID=mRNA_L-elsbetiae_contig1015.199.1|Name=mRNA_L-elsbetiae_contig1015.199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig1015:18339..18917- (Laminarionema elsbetiae ELsaHSoW15)
ACCACCAGAACTTCGAAGATCCACACGACTTCGGAGATCAACAGATTGAG
GGACGTCAACAGATTGAGGGACGACGAGCTGTTTCTGTGTGCTCTTCTTC
TGCAACGGCCCAAGACATTACTCCAAGGCTGCTTGCTGACCACCAGAACT
TCGAAGATCCACACGACTTCGGAGATCAACAGATTGAGGGACGTCAACAG
ATTGAGGGACGACGAGCTGTTTCTGTGTGCTCTTCTTCTGCAACGGCCCA
AGACATTACTCCAAGGCTGCTTGCTGAAGGGAAGCGGTCGGTTGGGTTTT
GGTAGCAGCGAGGACGGAAGGTGGCACCGGCGAACACCCGTCACCTCCTA
CGGCGTGATGGATGGCTTGACTTGGGAGGAAAAGTACTTGCGACTGCGAG
ACGACCACACTTCCCTCACTCACAAGGCCAATGAGCAAGATGACACCATT
CGACGGTAGAAGGGAAGCGGTCGGTTGGGTTTTGGTAGCAGCGAGGACGG
AAGGTGGCACCGGCGAACACCCGTCACCTCCTACGGCGTGATGGATGGCT
TGACTTGGGAGGAAAAGTACTTGCGACTGCGAGACGACCACACTTCCCTC
ACTCACAAGGCCAATGAGCAAGATGACACCATTCGACGGTAG
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