mRNA_L-elsbetiae_contig10142.195.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10142.195.1
Unique NamemRNA_L-elsbetiae_contig10142.195.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10142.195.1 vs. uniprot
Match: D7FQD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD6_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.180e-52
Identity = 76/110 (69.09%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    1 DLYVDPTELDCKGRHLFCHSCIHDFLTSEACTNKCPVCTTDIGYKRRTDILHAGRKREASGQPVGSSRKYQSQAVGLVQDMIEWLIDKRMVDYDDESEWRRRSGLEPLPP 330
            DL+VDP ELDCKG+HL+CHSCI+D + + +C NKCP+C T I    R  IL AGRKR ASG PVG++++YQSQAVGLVQ++IEWLI+KRMV YDDE+EWR+RSGLEPLPP
Sbjct:    4 DLFVDPIELDCKGKHLYCHSCIYDLVKNGSCQNKCPICMTSISSSTRKKILQAGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 113
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BLAST of mRNA_L-elsbetiae_contig10142.195.1 vs. uniprot
Match: A0A6H5JHZ8_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ8_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.380e-52
Identity = 77/110 (70.00%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    1 DLYVDPTELDCKGRHLFCHSCIHDFLTSEACTNKCPVCTTDIGYKRRTDILHAGRKREASGQPVGSSRKYQSQAVGLVQDMIEWLIDKRMVDYDDESEWRRRSGLEPLPP 330
            DL+VDP ELDCKG+HL+CHSCI+D + +E+C NKCP C T I    R  IL AGRKR ASG PVG++++YQSQAVGLVQ++IEWLI+KRMV YDDE+EWR+RSGLEPLPP
Sbjct:  141 DLFVDPIELDCKGKHLYCHSCIYDLVKNESCQNKCPTCMTSISSSTRKKILQAGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 250
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10142.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQD6_ECTSI1.180e-5269.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHZ8_9PHAE2.380e-5270.00RING-type domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10142contigL-elsbetiae_contig10142:623..1790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.8633616-CDS-L-elsbetiae_contig10142:622..7831622815245.8633616-CDS-L-elsbetiae_contig10142:622..783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10142 623..783 +
1691682793.3664324-CDS-L-elsbetiae_contig10142:622..7831691682793.3664324-CDS-L-elsbetiae_contig10142:622..783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10142 623..783 +
1622815245.8745935-CDS-L-elsbetiae_contig10142:1441..17901622815245.8745935-CDS-L-elsbetiae_contig10142:1441..1790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10142 1442..1790 +
1691682793.3762286-CDS-L-elsbetiae_contig10142:1441..17901691682793.3762286-CDS-L-elsbetiae_contig10142:1441..1790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10142 1442..1790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10142.195.1prot_L-elsbetiae_contig10142.195.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10142 623..1790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10142.195.1

>prot_L-elsbetiae_contig10142.195.1 ID=prot_L-elsbetiae_contig10142.195.1|Name=mRNA_L-elsbetiae_contig10142.195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
DLYVDPTELDCKGRHLFCHSCIHDFLTSEACTNKCPVCTTDIGYKRRTDI
LHAGRKREASGQPVGSSRKYQSQAVGLVQDMIEWLIDKRMVDYDDESEWR
RRSGLEPLPPPPKAPGGSGSKAGPMYRGSVGSRSVHRGIFSAGGSAGGAA
EVINLLSDSMDEEDDDDDDD
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mRNA from alignment at L-elsbetiae_contig10142:623..1790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10142.195.1 ID=mRNA_L-elsbetiae_contig10142.195.1|Name=mRNA_L-elsbetiae_contig10142.195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1168bp|location=Sequence derived from alignment at L-elsbetiae_contig10142:623..1790+ (Laminarionema elsbetiae ELsaHSoW15)
GACTTATACGTGGACCCCACAGAGCTGGACTGCAAGGGTAGGCACCTGTT
TTGCCACTCGTGCATCCACGACTTCTTGACGAGCGAGGCGTGCACCAACA
AGTGCCCCGTGTGCACCACCGACATCGGCTACAAAAGGCGAACAGATATC
CTGCACGCCGGGTGAGTGAGCGCAGCGTGCCAATTTTTTTCTGCAGTCGT
GTGAAAGAGCTCTCAATAACTTAAAATACCAACCTGCTTTTCGTCGATGC
GAGAGAGGTGGGGTTGCTCTTGACCCTGAAATCCCGCGCGCTCGGTCTCT
AGGCCACAGCAGTGCAGGCGGGAGTAGCCCGTCGTGGTTGATGCAGGCAG
TTTGAGTCTCTTTGCTCGTTCGATGAAGACCGCTTTATGTTTCTTTACTT
CTTGTTTATTTCCTTCGATATCACAAGCGTTGGTTGTTTTCACGGAGGGT
TGATTTCGTTAGTGCCGATGTTGGTGTGAATGTGGCTCGTCCGCATGAAC
GGGGGTTTGGCTTTTGCATGACCCGTGCTCTTCTCGCTGATTGTTCTTTC
ATTCCAAGATTTGCTATAAGGCAGCAGTGGTGGTAGTCTTGGATGTTGGG
CCTTGGCTGAGCCCGTTTGCGCGAGGTTCCGCACTGATGGAGTTATTTCT
CTGAGGACGAACTCTGACTTTCGAAAAAGACCTGCTTGTGTGCTGTCCTT
GTTGACTCCTTCCTTCGTTTCTTCCTTCATGCTGATATCGTTCCTCCATT
CATCCATTGCTGTACCGTTCTCTCTGTGCGTGGCAAAATTGTTAAAAACA
TAATGAAAACAAATAACAGGAGAAAGAGGGAGGCGTCTGGCCAGCCCGTG
GGCTCCTCCAGAAAGTACCAGTCGCAGGCCGTGGGCCTGGTGCAAGATAT
GATCGAGTGGCTCATCGACAAGCGCATGGTGGACTACGACGACGAGAGCG
AGTGGCGGAGGCGCTCGGGCCTGGAGCCGCTGCCGCCGCCGCCGAAGGCG
CCCGGCGGGAGTGGTTCCAAGGCGGGACCGATGTACAGGGGAAGCGTCGG
CTCGAGGAGCGTGCACCGGGGGATCTTTAGCGCCGGCGGCAGCGCCGGCG
GGGCTGCCGAGGTGATCAACCTGCTATCGGACAGCATGGATGAGGAGGAC
GACGACGATGACGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10142:623..1790+

>mRNA_L-elsbetiae_contig10142.195.1 ID=mRNA_L-elsbetiae_contig10142.195.1|Name=mRNA_L-elsbetiae_contig10142.195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig10142:623..1790+ (Laminarionema elsbetiae ELsaHSoW15)
GACTTATACGTGGACCCCACAGAGCTGGACTGCAAGGGTAGGCACCTGTT
TTGCCACTCGTGCATCCACGACTTCTTGACGAGCGAGGCGTGCACCAACA
AGTGCCCCGTGTGCACCACCGACATCGGCTACAAAAGGCGAACAGATATC
CTGCACGCCGGGACTTATACGTGGACCCCACAGAGCTGGACTGCAAGGGT
AGGCACCTGTTTTGCCACTCGTGCATCCACGACTTCTTGACGAGCGAGGC
GTGCACCAACAAGTGCCCCGTGTGCACCACCGACATCGGCTACAAAAGGC
GAACAGATATCCTGCACGCCGGGAGAAAGAGGGAGGCGTCTGGCCAGCCC
GTGGGCTCCTCCAGAAAGTACCAGTCGCAGGCCGTGGGCCTGGTGCAAGA
TATGATCGAGTGGCTCATCGACAAGCGCATGGTGGACTACGACGACGAGA
GCGAGTGGCGGAGGCGCTCGGGCCTGGAGCCGCTGCCGCCGCCGCCGAAG
GCGCCCGGCGGGAGTGGTTCCAAGGCGGGACCGATGTACAGGGGAAGCGT
CGGCTCGAGGAGCGTGCACCGGGGGATCTTTAGCGCCGGCGGCAGCGCCG
GCGGGGCTGCCGAGGTGATCAACCTGCTATCGGACAGCATGGATGAGGAG
GACGACGACGATGACGACGACGAGAAAGAGGGAGGCGTCTGGCCAGCCCG
TGGGCTCCTCCAGAAAGTACCAGTCGCAGGCCGTGGGCCTGGTGCAAGAT
ATGATCGAGTGGCTCATCGACAAGCGCATGGTGGACTACGACGACGAGAG
CGAGTGGCGGAGGCGCTCGGGCCTGGAGCCGCTGCCGCCGCCGCCGAAGG
CGCCCGGCGGGAGTGGTTCCAAGGCGGGACCGATGTACAGGGGAAGCGTC
GGCTCGAGGAGCGTGCACCGGGGGATCTTTAGCGCCGGCGGCAGCGCCGG
CGGGGCTGCCGAGGTGATCAACCTGCTATCGGACAGCATGGATGAGGAGG
ACGACGACGATGACGACGAC
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