mRNA_L-elsbetiae_contig1014.192.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1014.192.1
Unique NamemRNA_L-elsbetiae_contig1014.192.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1014.192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1014contigL-elsbetiae_contig1014:22755..24268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1014.192.1prot_L-elsbetiae_contig1014.192.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1014 22756..24268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.4041278-CDS-L-elsbetiae_contig1014:22755..228401622815245.4041278-CDS-L-elsbetiae_contig1014:22755..22840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 22756..22840 -
1691682793.0908234-CDS-L-elsbetiae_contig1014:22755..228401691682793.0908234-CDS-L-elsbetiae_contig1014:22755..22840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 22756..22840 -
1622815245.4183173-CDS-L-elsbetiae_contig1014:23092..232921622815245.4183173-CDS-L-elsbetiae_contig1014:23092..23292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 23093..23292 -
1691682793.1036339-CDS-L-elsbetiae_contig1014:23092..232921691682793.1036339-CDS-L-elsbetiae_contig1014:23092..23292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 23093..23292 -
1622815245.4281225-CDS-L-elsbetiae_contig1014:24226..242681622815245.4281225-CDS-L-elsbetiae_contig1014:24226..24268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 24227..24268 -
1691682793.1175385-CDS-L-elsbetiae_contig1014:24226..242681691682793.1175385-CDS-L-elsbetiae_contig1014:24226..24268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 24227..24268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1014.192.1

>prot_L-elsbetiae_contig1014.192.1 ID=prot_L-elsbetiae_contig1014.192.1|Name=mRNA_L-elsbetiae_contig1014.192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
DTFRTQNADLARELNDAKARLKKTGQENMDLQRKSSQLEFAHRVLVETRA
RAVPRVTSPATPATSTTAASGRSAANKSWLRGKSERKGSDQVGRATKDCQ
QAAGAHGHA
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mRNA from alignment at L-elsbetiae_contig1014:22755..24268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1014.192.1 ID=mRNA_L-elsbetiae_contig1014.192.1|Name=mRNA_L-elsbetiae_contig1014.192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1514bp|location=Sequence derived from alignment at L-elsbetiae_contig1014:22755..24268- (Laminarionema elsbetiae ELsaHSoW15)
GACACCTTCCGGACCCAGAATGCGGATCTCGCGAGAGAGCTGGCAAGTGT
TGGCTGCGCTTTCTACACGGCTCGTATTAGAAAAAAAAACTCTTTATCTA
GACTAGATACCTACATATGTACTTAGTCTAGACTTCTACCTACACATAGA
CTATCTACACATACTACACGATCTGATATGTAGTCTTTCTATGTAGTCGA
GTCTTCGAACATAACTTATTTGTGTACATAATCTAGGAGAATCCGTTGGA
TAAAATAAAAAGATGGTCTAGATAGACTATAGACTATAGTCTGTGCGGTA
TAGTTTCGTTTCGTGCCGTATTTGGCAGTCATTTGCTGTGTGTGAACAGT
GATGTCTTGCAGATGTTCGGTGGTACGAAACCTATTGTACTCATTATGTA
GCCTACCCTTTTGTAGCCCCTGAGAGATCCTGCCAGTCACTCCGTCGAAG
ATGTAAATAGCTAGACGAAGTCACATGGCGATAGCACAACAAATGTTGAG
CCTGGAGGAGGGTTTGGCAAACCCGCCATCACCAACACTGCCCCATCTTA
TACATACAACAAACAGCTAATGACGAGGCGGGCGGATGACCTGCCAAGCG
CCCGACTGACTTGCATGGCCTCAAGTGTTGTGAATCTACAGAGGGAGAAA
AAACCTGGGCAGGCTCCCCACCCAAAAACGACTCAGAACGAGTGCATGCC
TTCTCCTGTTGTACATACACCACGCAGCAATCACCCCCCCGTCGATGTAG
ATTGTCTCTAATGCCAGAGTTGGTCTATCGTGCCCCTTCTCTGTCGGCCA
CTCAATGCCTGCTGCTAACCTGCACCCCCCCCAGGAACGAAAGCTCCTCC
TCTTTTTGCCCCACTATTTCCAGCTCCGACCTTTTCCATCAACCCTGAAA
AAGACAGCCACCTTTATCCTCACGGCTGCACCTACAACGCCCGCGCGTCG
CCGCCACCCGACAAAACCATTCGTAGAACGATGCAAAGGCTAGGCTGAAG
AAAACCGGCCAAGAAAACATGGACCTCCAGCGGAAATCCAGCCAGCTGGA
GTTCGCCCACAGGGTGCTAGTAGAAACCCGAGCCCGTGCGGTTCCGAGGG
TTACGAGCCCCGCCACCCCGGCTACCTCCACCACCGCCGCCAGCGGCAGG
TCTGCAGCGAACAAGAGTTGGCTGAGGTCAGTCTCAGCTTCTTCCATGCG
CTCAGCAGCATGGAGAATGCTTCTCCGTGAGACACAGCGGTAGTGCGTCA
GAACACGCTGTTGGAGCGCCCACCGCGCTTGCGCATGGAAGCAGAGTAAC
AACAATAGTGGTCGGGGGTACAGACCTCCCTCGTATCTAGCCCGGCCGGC
CTCAAGCAAACGTTGGAACTAAGCTTCAATGACGTCACGGCTGGTGCGGT
TGTGGACGTTCTCTGGTCTCGTGAGCAGGGGAAAGAGCGAGCGAAAGGGC
AGCGATCAAGTGGGGCGCGCTACCAAGGACTGCCAGCAAGCGGCCGGTGC
TCACGGCCACGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1014:22755..24268-

>mRNA_L-elsbetiae_contig1014.192.1 ID=mRNA_L-elsbetiae_contig1014.192.1|Name=mRNA_L-elsbetiae_contig1014.192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1014:22755..24268- (Laminarionema elsbetiae ELsaHSoW15)
GACACCTTCCGGACCCAGAATGCGGATCTCGCGAGAGAGCTGGACACCTT
CCGGACCCAGAATGCGGATCTCGCGAGAGAGCTGAACGATGCAAAGGCTA
GGCTGAAGAAAACCGGCCAAGAAAACATGGACCTCCAGCGGAAATCCAGC
CAGCTGGAGTTCGCCCACAGGGTGCTAGTAGAAACCCGAGCCCGTGCGGT
TCCGAGGGTTACGAGCCCCGCCACCCCGGCTACCTCCACCACCGCCGCCA
GCGGCAGGTCTGCAGCGAACAAGAGTTGGCTGAGAACGATGCAAAGGCTA
GGCTGAAGAAAACCGGCCAAGAAAACATGGACCTCCAGCGGAAATCCAGC
CAGCTGGAGTTCGCCCACAGGGTGCTAGTAGAAACCCGAGCCCGTGCGGT
TCCGAGGGTTACGAGCCCCGCCACCCCGGCTACCTCCACCACCGCCGCCA
GCGGCAGGTCTGCAGCGAACAAGAGTTGGCTGAGGGGAAAGAGCGAGCGA
AAGGGCAGCGATCAAGTGGGGCGCGCTACCAAGGACTGCCAGCAAGCGGC
CGGTGCTCACGGCCACGCCGGGAAAGAGCGAGCGAAAGGGCAGCGATCAA
GTGGGGCGCGCTACCAAGGACTGCCAGCAAGCGGCCGGTGCTCACGGCCA
CGCC
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