mRNA_L-elsbetiae_contig9989.18910.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9989.18910.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI) HSP 1 Score: 306 bits (783), Expect = 2.270e-85 Identity = 413/875 (47.20%), Postives = 455/875 (52.00%), Query Frame = 1 Query: 1 VSFGSIVLGVCDALPATPKGNNVTRTSHRVSQRAEDLTMRLSGLGSIASAKVRGVLAKRRSLPGVCVRVSCE--VLGDADSFLLSVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGLDSHWFWGHVRKSPAVAENLLDAVLTKASTLSRRVVXXXXXXXXXXXXXXXX----AP-----VGELCTAMRAYCELVSLGRPAAIGARHLNTATSAPIDALEALI----------SAFRRPGIAHAAVAQGSPSPSXXXXXXXAVVARLEEIALCSVVMTAGGVAAHGLGNGGATGRXXXXXXXXXXXXXXDGGGSVGIDAGDGARQCAAALRRLIVLGRSAGSDSGXXXXXXXXXXXXXXXXXXXXXRXXXXAGLYVALLLRGSRFEAVADVVGEVLGARTVPPPLSGPAGADALEALRDAAVAASESEFPCPXXXXXXXXXXXXXXXSPRLCPSFASLRSAGAAXXXXXXXXVSPRGGP--ASSRRGGAV-PPLSLATSAVPPSSRARPRTWSTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--WFSEAALADGVKALPP---------CPGPKVGSVLSAMPRGKAATAPASGAAVVAAAAVSRGGERWRYGPVDCVEEALEQGILVRRRVDLRDWVVSAIAAXXXXXXXXXXXXXXL----------LHPSLLRVVCLYAEACVAPPFGSGPAAAXXXASTFLMTAILPAEVTEIVRGVEWLGL--ADMPRTDPLFPGMPPPLPHPSL-PAPPLHPGGGVVVGAVGGQWRAXXXXXXXXXXXXSREMEAATVSSAALVPAVLATCFALHHTHCVAQRRSPFPAPFR 2481 +S SIVLGVCDA+ ATP G TRTSHRVS+RAE+L MRL GLG+IAS KVR VL RS G R V+G GL+SHWFWGH+RKSPAV E LLD VL K L+R V XXXXXXXXX AP VGEL A+RAYCELV LGRPAA+ RHL A SAP DALEA++ XXXXXXX XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX XXXXAGLY ALLLRG+RFEAVA VV LG + PPPL+GP G DAL+ALRDAA+AASESEFP P SPR PS + XXXXX VSPRGGP ++RRG V PPLSLA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WFSE ALAD VKALPP PG + +S G+ + G RWR PVDCVEEALEQG+LVR R+DLRDWV+S I XXXXXXXXXXX LHPSLLRVVCLYA+ACV P G+G A F+MTA+LP E+ EIVR V+W+GL A P DPLFPGMPPPLPHPS+ P+ L GGVVVGA S E VS A +PA+LATCFAL+HTHC++ RRSPFPAPFR Sbjct: 382 LSLESIVLGVCDAVAATP-GITATRTSHRVSRRAEELVMRLCGLGAIASVKVRQVL---RSGHGRHHRQEDNGGVVGTGGG------------------------------------------------------------------NAGLNSHWFWGHLRKSPAVTEQLLDTVLAKVEALARETVGXXXXXXXXXYSDRSAGSSTAPATTGTVGELSVALRAYCELVGLGRPAALTERHLQAAMSAPTDALEAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVAKVVSGALG--STPPPLTGPDGMDALDALRDAALAASESEFPRPPS-------------SPR--PSNNTAXXXXXXXXXXXSPPVSPRGGPKLTAARRGSEVMPPLSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGWFSEPALADCVKALPPSCSVPVAAAAPGSALAPTVSEGVEGEPPAVATAXXXXXXXXXXXXXG-RWRLCPVDCVEEALEQGLLVRCRIDLRDWVLSTILGAGTXXXXXXXXXXXXXXGAPGGKVDLHPSLLRVVCLYAKACVPPDLGAGDGAG----KAFVMTALLPTEIAEIVRAVDWVGLTVAMPPPKDPLFPGMPPPLPHPSMTPSAGLLQPGGVVVGAPRAVGGGGVRKPGNWTGGGSSRGEVVIVSEA--MPALLATCFALYHTHCISLRRSPFPAPFR 1162
BLAST of mRNA_L-elsbetiae_contig9989.18910.1 vs. uniprot
Match: A0A6H5K9Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q4_9PHAE) HSP 1 Score: 296 bits (758), Expect = 7.500e-84 Identity = 438/782 (56.01%), Postives = 476/782 (60.87%), Query Frame = 1 Query: 16 IVLGVCDALPATPKGNNVTRTSHRVSQRAEDLTMRLSGLGSIASAKVRGVLAKRRSLPGVCVRVSCEVLGDADSFLLSVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GTGLDSHWFWGHVRKSPAVAENLLDAVLTKASTLSRRVVXXXXXXXXXXXXXXXX---------APVGELCTAMRAYCELVSLGRPAAIGARHLNTATSAPIDALEA-LISAFRRPGIAHAAVAQGSPSPSXXXXXXXAVVARLEEIALCSVVMTAGGVAAHGLGNGGATGRXXXXXXXXXXXXXXDGGGSVGIDAGDGARQCAAALRRLIVLGRSAGSDSGXXXXXXXXXXXXXXXXXXXXXRXXXX-------AGLYVALLLRGSRFEAVADVVGEVLGARTVPPPLSGPAGADALEALRDAAVAASESEFPCPXXXXXXXXXXXXXXXSPRLCPSFASLRSAGAAXXXXXXXXVSPRGGP--ASSRRGGAVPPLSLATSAVPPSSRARPRTWSTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWFSEAALADGVKALPP-CPGPKVGSVLSAMPRGKAATAP----------------ASGAAVVAAAAVSRGGERWRYGPVDCVEEALEQGILVRRRVDLRDWVVSAIAAXXXXXXXXXXXXXXL--------------------LHPSLLRVVCLYAEACVAPPFGSGPAAAXXXASTFLMTAILPAEVTEIVRGVEWLG 2181 IVLGVCDA+ TP G T TSH VS+RAE+L MRL GLG++AS KVRGVL KRRSLPGVC +V+CEVL DAD F+L+VAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GL+SHWFWGH+RKSPAV E LLD VL + LSR V APVGELC A+RAYCELV LGRPAA+ RHL A SAP DALEA L+ PG A XXXXXXX XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX XXXX AGLY ALLLRG+RFEAVA+VV EVLG+ T PPL+GP G DAL+ALRDAA+AASESEFP P XXXXXXXXXXXXXX XXXXX VSPRGGP AS+RRG P + A VP X XXXXXXXXXXXXXXXXXXXXXXXXXXX WFSEAALAD VKALPP C SV++A+ +A AP A G A+VAA GG RWR PVDCVEEALEQG+LVR RVDLRDWV+S I XXXXXXXXXXXX LHPSLLRVVCLYA+ACVAP G+G A F+MTA+LP E+ EIV+ V+W+G Sbjct: 107 IVLGVCDAVTVTP-GITATLTSHNVSRRAEELVMRLCGLGAMASVKVRGVLVKRRSLPGVCAKVACEVLCDADRFVLAVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGLNSHWFWGHLRKSPAVTEQLLDTVLARVEALSRETVGRGGGAAAAACGDRIAGSTTAPATTAPVGELCAALRAYCELVGLGRPAALTERHLQAAMSAPTDALEAMLLLPSAAPGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVANVVSEVLGSTT--PPLTGPDGMDALDALRDAALAASESEFPRPPXXXXXXXXXXXXXXX---------------XXXXXXSPPVSPRGGPKLASARRGSEAPVAAGAVGVVPXXXXXXXXXXXX---XRRRRGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGWFSEAALADCVKALPPSC------SVVAAVAAPCSALAPSVSEGVEGEPPAVATAAWGGAIVAAG----GGGRWRLCPVDCVEEALEQGLLVRCRVDLRDWVLSTILGAGXXXXXXXXXXXXXXXXXXXXXXGRGGAPGGKVDLHPSLLRVVCLYAKACVAPDLGAGDGAG----KAFVMTALLPTEIAEIVQAVDWVG 853 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9989.18910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9989.18910.1 >prot_L-elsbetiae_contig9989.18910.1 ID=prot_L-elsbetiae_contig9989.18910.1|Name=mRNA_L-elsbetiae_contig9989.18910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=860bp VSFGSIVLGVCDALPATPKGNNVTRTSHRVSQRAEDLTMRLSGLGSIASAback to top mRNA from alignment at L-elsbetiae_contig9989:110..6928+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9989.18910.1 ID=mRNA_L-elsbetiae_contig9989.18910.1|Name=mRNA_L-elsbetiae_contig9989.18910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6819bp|location=Sequence derived from alignment at L-elsbetiae_contig9989:110..6928+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9989:110..6928+ >mRNA_L-elsbetiae_contig9989.18910.1 ID=mRNA_L-elsbetiae_contig9989.18910.1|Name=mRNA_L-elsbetiae_contig9989.18910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5160bp|location=Sequence derived from alignment at L-elsbetiae_contig9989:110..6928+ (Laminarionema elsbetiae ELsaHSoW15)back to top |