mRNA_L-elsbetiae_contig9979.18903.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9979.18903.1
Unique NamemRNA_L-elsbetiae_contig9979.18903.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9979.18903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9979contigL-elsbetiae_contig9979:5438..5898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.7174134-UTR-L-elsbetiae_contig9979:5437..55741622817055.7174134-UTR-L-elsbetiae_contig9979:5437..5574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9979 5438..5574 -
1691684013.6025214-UTR-L-elsbetiae_contig9979:5437..55741691684013.6025214-UTR-L-elsbetiae_contig9979:5437..5574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9979 5438..5574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.7292545-CDS-L-elsbetiae_contig9979:5574..58981622817055.7292545-CDS-L-elsbetiae_contig9979:5574..5898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9979 5575..5898 -
1691684013.6124456-CDS-L-elsbetiae_contig9979:5574..58981691684013.6124456-CDS-L-elsbetiae_contig9979:5574..5898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9979 5575..5898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9979.18903.1prot_L-elsbetiae_contig9979.18903.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9979 5575..5898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9979.18903.1

>prot_L-elsbetiae_contig9979.18903.1 ID=prot_L-elsbetiae_contig9979.18903.1|Name=mRNA_L-elsbetiae_contig9979.18903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MERGCGARGVLPAVQHVPTAAVESAATPAAADTAEPTPESEEQLAAWAEL
VGQPEESWWVESVESAVFEQWWVESVESVVVCRNDNSCTEEIVESADFEK
WWIESVE*
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mRNA from alignment at L-elsbetiae_contig9979:5438..5898-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9979.18903.1 ID=mRNA_L-elsbetiae_contig9979.18903.1|Name=mRNA_L-elsbetiae_contig9979.18903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=461bp|location=Sequence derived from alignment at L-elsbetiae_contig9979:5438..5898- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGAGGGTGTGGTGCGCGTGGAGTTTTGCCTGCTGTGCAACATGT
GCCAACTGCCGCGGTCGAGTCTGCGGCGACGCCGGCGGCGGCGGATACGG
CGGAACCAACACCAGAGTCGGAGGAACAACTCGCCGCATGGGCGGAACTG
GTGGGGCAGCCGGAGGAGAGCTGGTGGGTCGAGTCTGTGGAGTCTGCTGT
TTTCGAGCAATGGTGGGTCGAGTCGGTCGAGTCTGTTGTCGTTTGCCGGA
ACGATAACTCGTGTACTGAAGAGATAGTAGAGTCTGCTGATTTCGAGAAA
TGGTGGATCGAGTCTGTCGAGTAGGTCAAATCTGTCAAGAACGATGGTTG
GTATCGGACGAAGTGAAGTCTTTCCTTCTCGAGCTGGATAGCCAATGCAC
CTACAATGGCGATGAGCTGTGTGTTCGCGACACCGCGGTGTCTGTTCACC
GCGGCGGCGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9979:5438..5898-

>mRNA_L-elsbetiae_contig9979.18903.1 ID=mRNA_L-elsbetiae_contig9979.18903.1|Name=mRNA_L-elsbetiae_contig9979.18903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig9979:5438..5898- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGAGGGTGTGGTGCGCGTGGAGTTTTGCCTGCTGTGCAACATGT
GCCAACTGCCGCGGTCGAGTCTGCGGCGACGCCGGCGGCGGCGGATACGG
CGGAACCAACACCAGAGTCGGAGGAACAACTCGCCGCATGGGCGGAACTG
GTGGGGCAGCCGGAGGAGAGCTGGTGGGTCGAGTCTGTGGAGTCTGCTGT
TTTCGAGCAATGGTGGGTCGAGTCGGTCGAGTCTGTTGTCGTTTGCCGGA
ACGATAACTCGTGTACTGAAGAGATAGTAGAGTCTGCTGATTTCGAGAAA
TGGTGGATCGAGTCTGTCGAGTAGATGGAGCGAGGGTGTGGTGCGCGTGG
AGTTTTGCCTGCTGTGCAACATGTGCCAACTGCCGCGGTCGAGTCTGCGG
CGACGCCGGCGGCGGCGGATACGGCGGAACCAACACCAGAGTCGGAGGAA
CAACTCGCCGCATGGGCGGAACTGGTGGGGCAGCCGGAGGAGAGCTGGTG
GGTCGAGTCTGTGGAGTCTGCTGTTTTCGAGCAATGGTGGGTCGAGTCGG
TCGAGTCTGTTGTCGTTTGCCGGAACGATAACTCGTGTACTGAAGAGATA
GTAGAGTCTGCTGATTTCGAGAAATGGTGGATCGAGTCTGTCGAGTAG
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