mRNA_L-elsbetiae_contig9977.18900.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9977.18900.1
Unique NamemRNA_L-elsbetiae_contig9977.18900.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9977.18900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9977contigL-elsbetiae_contig9977:1900..2528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size631
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.6393156-UTR-L-elsbetiae_contig9977:1899..21411622817055.6393156-UTR-L-elsbetiae_contig9977:1899..2141Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9977 1900..2141 +
1691684013.5635512-UTR-L-elsbetiae_contig9977:1899..21411691684013.5635512-UTR-L-elsbetiae_contig9977:1899..2141Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9977 1900..2141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.6520388-CDS-L-elsbetiae_contig9977:2141..25281622817055.6520388-CDS-L-elsbetiae_contig9977:2141..2528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9977 2142..2528 +
1691684013.5772605-CDS-L-elsbetiae_contig9977:2141..25281691684013.5772605-CDS-L-elsbetiae_contig9977:2141..2528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9977 2142..2528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9977.18900.1prot_L-elsbetiae_contig9977.18900.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9977 2142..2528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9977.18900.1

>prot_L-elsbetiae_contig9977.18900.1 ID=prot_L-elsbetiae_contig9977.18900.1|Name=mRNA_L-elsbetiae_contig9977.18900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MYLQLASIALRFYLASISTCHLEGSAECPWWEDGSESPSSSSSSALAQGA
RCFSLRDRDLQPREQASRKFSVQARGAPALLTVINLRAPHLPTCCQCGAS
IRKRPEPPLRGNVEALERSNSCGSPETKA
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mRNA from alignment at L-elsbetiae_contig9977:1900..2528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9977.18900.1 ID=mRNA_L-elsbetiae_contig9977.18900.1|Name=mRNA_L-elsbetiae_contig9977.18900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=629bp|location=Sequence derived from alignment at L-elsbetiae_contig9977:1900..2528+ (Laminarionema elsbetiae ELsaHSoW15)
GAACGGTCGAGATTCCGCCCCTTCCTCTCGAAAATGCCGGAGTGTAAATA
CCTAGGCAAAAAAGTGCGAAGGGGGCGCCGCGGCAATTAAATGGCCCACC
GCGCCGTGCAACGCCCAACAAAAGGGCGCAACATAAAAAAAAACACAACG
CCCGGCGACCTGCCGTTCTGCACCGCTAAATAACACGACGGAGCCTTACA
CCTCCACCGCCCGCTGTGGGCCACTCTTCCCATCGACGCCCCATGTACCT
ACAACTCGCATCCATTGCCCTCCGCTTCTACCTCGCATCTATCTCTACGT
GTCACCTCGAGGGCTCCGCGGAATGCCCCTGGTGGGAGGACGGCTCTGAG
TCACCGTCGTCATCATCATCGTCCGCGCTAGCACAGGGGGCGCGCTGCTT
CTCCCTGCGAGACCGAGACCTGCAACCCCGGGAACAAGCATCGCGAAAGT
TCAGCGTGCAAGCACGAGGCGCACCCGCTCTTCTTACCGTCATAAACCTG
CGAGCACCCCATCTCCCCACATGTTGCCAATGCGGGGCGAGCATCCGTAA
ACGACCAGAACCCCCCCTTCGCGGAAACGTGGAGGCCCTGGAGCGCAGCA
ATAGTTGCGGCTCGCCCGAGACCAAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9977:1900..2528+

>mRNA_L-elsbetiae_contig9977.18900.1 ID=mRNA_L-elsbetiae_contig9977.18900.1|Name=mRNA_L-elsbetiae_contig9977.18900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig9977:1900..2528+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTACAACTCGCATCCATTGCCCTCCGCTTCTACCTCGCATCTAT
CTCTACGTGTCACCTCGAGGGCTCCGCGGAATGCCCCTGGTGGGAGGACG
GCTCTGAGTCACCGTCGTCATCATCATCGTCCGCGCTAGCACAGGGGGCG
CGCTGCTTCTCCCTGCGAGACCGAGACCTGCAACCCCGGGAACAAGCATC
GCGAAAGTTCAGCGTGCAAGCACGAGGCGCACCCGCTCTTCTTACCGTCA
TAAACCTGCGAGCACCCCATCTCCCCACATGTTGCCAATGCGGGGCGAGC
ATCCGTAAACGACCAGAACCCCCCCTTCGCGGAAACGTGGAGGCCCTGGA
GCGCAGCAATAGTTGCGGCTCGCCCGAGACCAAGGCGATGTACCTACAAC
TCGCATCCATTGCCCTCCGCTTCTACCTCGCATCTATCTCTACGTGTCAC
CTCGAGGGCTCCGCGGAATGCCCCTGGTGGGAGGACGGCTCTGAGTCACC
GTCGTCATCATCATCGTCCGCGCTAGCACAGGGGGCGCGCTGCTTCTCCC
TGCGAGACCGAGACCTGCAACCCCGGGAACAAGCATCGCGAAAGTTCAGC
GTGCAAGCACGAGGCGCACCCGCTCTTCTTACCGTCATAAACCTGCGAGC
ACCCCATCTCCCCACATGTTGCCAATGCGGGGCGAGCATCCGTAAACGAC
CAGAACCCCCCCTTCGCGGAAACGTGGAGGCCCTGGAGCGCAGCAATAGT
TGCGGCTCGCCCGAGACCAAGGCG
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