mRNA_L-elsbetiae_contig9977.18901.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9977.18901.1
Unique NamemRNA_L-elsbetiae_contig9977.18901.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9977.18901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9977contigL-elsbetiae_contig9977:3331..5821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9977.18901.1prot_L-elsbetiae_contig9977.18901.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9977 3331..5798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.579417-CDS-L-elsbetiae_contig9977:3330..34661622817055.579417-CDS-L-elsbetiae_contig9977:3330..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9977 3331..3466 -
1691684013.5221694-CDS-L-elsbetiae_contig9977:3330..34661691684013.5221694-CDS-L-elsbetiae_contig9977:3330..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9977 3331..3466 -
1622817055.590514-CDS-L-elsbetiae_contig9977:5703..57981622817055.590514-CDS-L-elsbetiae_contig9977:5703..5798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9977 5704..5798 -
1691684013.5354946-CDS-L-elsbetiae_contig9977:5703..57981691684013.5354946-CDS-L-elsbetiae_contig9977:5703..5798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9977 5704..5798 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817055.6014214-UTR-L-elsbetiae_contig9977:5798..58211622817055.6014214-UTR-L-elsbetiae_contig9977:5798..5821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9977 5799..5821 -
1691684013.5512433-UTR-L-elsbetiae_contig9977:5798..58211691684013.5512433-UTR-L-elsbetiae_contig9977:5798..5821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9977 5799..5821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9977.18901.1

>prot_L-elsbetiae_contig9977.18901.1 ID=prot_L-elsbetiae_contig9977.18901.1|Name=mRNA_L-elsbetiae_contig9977.18901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MASAAPRSGSGRSNLEAAAEAEAEAAVPATSRAAGHGGRSSMKRCPPPAS
PSPEASDASSGPDEEDDDDDEDDSPNK
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mRNA from alignment at L-elsbetiae_contig9977:3331..5821-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9977.18901.1 ID=mRNA_L-elsbetiae_contig9977.18901.1|Name=mRNA_L-elsbetiae_contig9977.18901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2491bp|location=Sequence derived from alignment at L-elsbetiae_contig9977:3331..5821- (Laminarionema elsbetiae ELsaHSoW15)
TTCGGGCCGCGATCAGAGAGGATATGGCCAGCGCTGCTCCCCGCAGTGGT
AGCGGCAGGAGCAACCTCGAAGCGGCAGCGGAGGCGGAGGCGGAGGCGGC
GGTGCCGGCAACATCGAGGCAAGTCGAGTCTCGATTCGAGCCGAGCCGAT
TCCTCCACCCCCAAGAGAACTGCTTTCAGGCTGTTTTTCGTGGCTTGGTT
TGCCCCGCTATCGTTGAAAAGGGAGCACTAAATGTTCGTTAGATGGACTT
AACCACTAGACCACTCAGTCAAGCGCTTGACTGGGACCCCCTCGCCAAGG
CTTACTGGTGATCTCTAGTGTGCCATCCAACGTGTGCTCTTCTCCAGGAG
AAGGCATTGTGTGCACTCTACTCCTTCCTGCCGGAGGAGGCACTTTTCCC
TTTTTCATTCCTCAGAAAAAGTCGACAATACCCTGCCAGCGAGGTTCGAA
CTCGGGTATGTATTTTGTTGTTGGATGGACTTATTCACTAGACCACTCAG
TCAAGAGCGAGGTTCGAACTCGGGTATGTCTTTTGTTGTTGGATGGACTT
ATCCACTAGACCACTCAGTCAAGGAACTCGGGTATGTCTTTTGTTGTTGG
ATGGACTTATCCACTAGACCACTCGGTCAAGGAACTCGGGTATGTCTTTA
TTTGTTGGATGGACTTATCCATGGATAGACTTATCCACTAGACCACTCGG
TCAAGGAACTCGGGTATGTCTTTATTTGTTGGATGGACTTATCCATGGCC
GAGTGGTCTAGTGGATAAGTCCATCCAACAACAATCCATGGATAAGTCCA
TCCAACAAATAAAGATATACCCGAGTTCCTTGACCGAGTGGTCTAGTGGA
TAAGTCCATCCAACAACAAAAGACATACCTCCATGGATAAGTCCATCCAA
CAAATAAAGACATACCCGAGTTCCTTGACCGAGTGGTCTAGTGGATAAGT
CCATCCAACAACAAAAGACATACCCGAGTTCGAACCTCGCTGGCAGGGTA
CGCTTGACTGAGTGGTCTAGTGGATAAGTCCATCCAACAACAATAGACAC
ACCCGAGTTCGAACCTCGCTCTTGACTGAGTGGTCTAGTGGATAAGTCCA
TCCAACAACAACAAAAAGACATACACGAGTTCGAACCTCGCTGGCAGGGT
ATTGTCGACTTTTTCTGAGGAATGAAAAAGGGAAAAGTGCCTCCTCCGGC
AGGAAGGAGTAGAGAGCACACAGTGCCTTCTCCTGGAGAAGAGCACACGT
TGGATGGCACACTAGAGATCACTAGTAAGCCTTGGCGAGGGGGTCCCAGA
GAGAGTGGGTTCCCCGGAGATCCCTGCTGGCAAGGTCCATTCGGACCGGA
GTATATATTTTGTTGTTGGATGGACTTAACCACTAGACCACTCAGTCAAG
CCTTGACTGAGTGGTCTAGTGGTTAAGTCGATCTAACGAACACTAAATAG
TTAGTTCTGGCGTAGATTCTTCCCCAGCCTGTCGGGGCAACGGAGAGATC
CCCTGCTCGATAAAGTTCGAATAAGAGTGACGATGGGTTTTGCGGTGTTT
ATCTTGGCGGAGCGTCTCATTGTGGCGGAGCGTTTGCGTTGATGAGTACG
AAGTCGCGTCCACCGTCCAAATGTTTTCGGCGTGCTGTGCTTGGTTCTGG
GTTAGTTAAGTCACGCTTGGAGGCTCTTCCTTTTCCACGCGCAGAGATAT
TTTTTTCCCTCTTTCTGCGCGCGATTTTCGTGGATACATCTTTTCACAAC
GAGATGAGAGAAATCCGTCGGCAAAAGTGGTTAGTTGTCCTCTTAACCCC
GACAGCGTGCTCTTCGTTGGCCACGAGCATGCTTTCGTCCTGACCCCGGT
CCAGCTGTTTCTGGTGTTTAGCTACTTGCACTTGGATGCTGAAAAAAGAA
AAAGAAAAAGAAAACTCTTGCAGCCAGCCTCCCCCAAACATAAATGTCGG
CCGGAGGAATGCATGAGGGTATGTTTGTATGTAGAAGTAGTTTTCTATTG
ACTGGTTCTCCGCAGGGCCTTCCTCCCCAAACTGGATTAAACTGGTTCTA
ACTGGTTCTAACTGGTTCCAACTGGTCAAATCGTTCGTTGTCTTGCGCAA
GAGTAGCCAAATTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGTTCGCGGCAGCGCCGACGC
ATCGCCAGTATTTTAAGTTTCAAAAGTTCTTCCGAAAAGACTAACCCGTG
AAAACGCCGGGATCGCGTTTTCCTGGCGATGTGTTGCTGCGCGCGCGCGT
GTGCCTTGCGGTTGTATGTATGTACGTTTTACGCCGCTGTTTTGCCGCCT
TGCAGGGCCGCTGGCCACGGGGGCCGGTCTAGCATGAAGCGGTGCCCCCC
TCCCGCTTCTCCTTCTCCGGAGGCAAGCGACGCCTCATCGGGTCCAGACG
AGGAGGACGACGACGACGACGAGGATGACAGCCCAAACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9977:3331..5821-

>mRNA_L-elsbetiae_contig9977.18901.1 ID=mRNA_L-elsbetiae_contig9977.18901.1|Name=mRNA_L-elsbetiae_contig9977.18901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig9977:3331..5821- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAGCGCTGCTCCCCGCAGTGGTAGCGGCAGGAGCAACCTCGAAGC
GGCAGCGGAGGCGGAGGCGGAGGCGGCGGTGCCGGCAACATCGAGATGGC
CAGCGCTGCTCCCCGCAGTGGTAGCGGCAGGAGCAACCTCGAAGCGGCAG
CGGAGGCGGAGGCGGAGGCGGCGGTGCCGGCAACATCGAGGGCCGCTGGC
CACGGGGGCCGGTCTAGCATGAAGCGGTGCCCCCCTCCCGCTTCTCCTTC
TCCGGAGGCAAGCGACGCCTCATCGGGTCCAGACGAGGAGGACGACGACG
ACGACGAGGATGACAGCCCAAACAAGGGCCGCTGGCCACGGGGGCCGGTC
TAGCATGAAGCGGTGCCCCCCTCCCGCTTCTCCTTCTCCGGAGGCAAGCG
ACGCCTCATCGGGTCCAGACGAGGAGGACGACGACGACGACGAGGATGAC
AGCCCAAACAAG
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